BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G08000.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg317651 jgi|Araly1|317651|fgenesh1_pm.C_scaffold_3000667 710 0.0 > Ahg317651 jgi|Araly1|317651|fgenesh1_pm.C_scaffold_3000667 Length=429 Score = 710 bits (384), Expect = 0.0 Identities = 410/423 (97%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 110 AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCTATTTCTTCT 169 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7 AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCGATTTCTTCT 66 Query 170 AGCTTCCATTTTCTTCCTCAATTTTGCACTTCTTCTTCTGCATCGCCCAGTTCCAAGCTA 229 |||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 67 AGCTCCCATTTTCTTCCTCAATTTTGCACATCTTCTTCTGCATCCCCCAGTTCCAAGCTA 126 Query 230 TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC 186 Query 290 TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTATGACAAAGGAAGTGGGAGATCAAGAGGA 349 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 187 TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTACGACAAAGGAAGTGGGAGATCAAGAGGA 246 Query 350 TTTGGTTTTGTTGATTTTGCAGAAGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT 409 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 247 TTCGGTTTTGTTGATTTTGCAGAGGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT 306 Query 410 GGAAAGGGATTATTGGGTCGACCGTTGAGGATAAGTTTTGCCCTTGAAAGAGTGCGTGGT 469 |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 307 GGAAAGGGATTATTGGGTCGGCCGTTGAGAATAAGTTTTGCCCTTGAAAGAGTGCGTGGT 366 Query 470 GGTCCTGTGGTTGTTCCACGTCTTGGGAAATCGAAGAGAGAAAGAGAAAGAGTCTTCAAG 529 ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||| Sbjct 367 GGTCCTGTGGTTGTTCCTCGTCTTGAGAAATCGAAGAGAGACAGAGAACGAGTCTTCAAG 426 Query 530 TGA 532 ||| Sbjct 427 TGA 429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5