BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G08000.1

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317651 jgi|Araly1|317651|fgenesh1_pm.C_scaffold_3000667           710    0.0  


> Ahg317651 jgi|Araly1|317651|fgenesh1_pm.C_scaffold_3000667
Length=429

 Score =  710 bits (384),  Expect = 0.0
 Identities = 410/423 (97%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  110  AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCTATTTCTTCT  169
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  7    AATGGTATTGAGCTATTAGTGAGACGAGTTTCAGCGATACCTCAACACTCGATTTCTTCT  66

Query  170  AGCTTCCATTTTCTTCCTCAATTTTGCACTTCTTCTTCTGCATCGCCCAGTTCCAAGCTA  229
            |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  67   AGCTCCCATTTTCTTCCTCAATTTTGCACATCTTCTTCTGCATCCCCCAGTTCCAAGCTA  126

Query  230  TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  TTCATCGGAGGATTGTCCTGGTCTGTGGATGAGCAATCTCTCAAAGACGCTTTCTCTTCC  186

Query  290  TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTATGACAAAGGAAGTGGGAGATCAAGAGGA  349
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  187  TTTGGAGAGGTTGCAGAAGTTAGGATTGCGTACGACAAAGGAAGTGGGAGATCAAGAGGA  246

Query  350  TTTGGTTTTGTTGATTTTGCAGAAGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT  409
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  247  TTCGGTTTTGTTGATTTTGCAGAGGAAGGTGATGCTCTATCTGCAAAAGACGCCATGGAT  306

Query  410  GGAAAGGGATTATTGGGTCGACCGTTGAGGATAAGTTTTGCCCTTGAAAGAGTGCGTGGT  469
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  307  GGAAAGGGATTATTGGGTCGGCCGTTGAGAATAAGTTTTGCCCTTGAAAGAGTGCGTGGT  366

Query  470  GGTCCTGTGGTTGTTCCACGTCTTGGGAAATCGAAGAGAGAAAGAGAAAGAGTCTTCAAG  529
            ||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||
Sbjct  367  GGTCCTGTGGTTGTTCCTCGTCTTGAGAAATCGAAGAGAGACAGAGAACGAGTCTTCAAG  426

Query  530  TGA  532
            |||
Sbjct  427  TGA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27143516904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5