BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08010.1
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478142 jgi|Araly1|478142|fgenesh2_kg.3__843__AT3G08010.1 2115 0.0
> Ahg478142 jgi|Araly1|478142|fgenesh2_kg.3__843__AT3G08010.1
Length=1288
Score = 2115 bits (1145), Expect = 0.0
Identities = 1243/1289 (96%), Gaps = 11/1289 (1%)
Strand=Plus/Plus
Query 1 AAGGAGTAACCGAAAAGGATAAATCATttcttcttcttcttc--c-tctgct-ttcttc- 55
||||||||||||||||||||||||| |||||||||||||||| | ||| || ||||||
Sbjct 1 AAGGAGTAACCGAAAAGGATAAATCGTTTCTTCTTCTTCTTCTTCTTCTTCTATTCTTCG 60
Query 56 --CTAAAGCCTACTCCTTTTCAATGGCGACGTTAGGCTTTAACACAAGGCGAATCCAGAC 113
||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 61 TGCTAAAGCTTACTCCTTTTCAATGGCGACGTTAGGCTTTAACACCACTCGAATCCAGAC 120
Query 114 ACCATCACTTCCGAGAATCCCTAAACCCTCTTCTTTTACTAAACCCATCAAAACCCATCA 173
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 ACCATCACTTCCGAGAATCCCTAAACCTTCTTCTTTTACTAAACCCATCAAAACCCATCA 180
Query 174 TCTCTTCTCCTCCGAAACTCTGTTGAAACGCTGCCGTTTCGTCTCTAGATCGTTACCTGA 233
||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 181 TCTCTTCTCCTCCGAAATTCTGTTGAAACGCTGTCGTTTCGTGTCTAGATCGTTGCCTGA 240
Query 234 GAGCTCACTGTCGATTACAAAAGAACAAGAGGTAGCTAATGAAGTAGAAGAAGATGATCC 293
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 241 GAGCTCACTGTCGATTACAAAAGAACAAGAAGTAGCTAATGAAGTAGAGGAAGATGATCC 300
Query 294 AACTTCAGAGCTGAGCTATCTGGATCCTGAATCCGATGCGGATAGCATCAAAGAGTGGGA 353
||| || |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 301 AACGTCGGAGCTGAGTTATCTGGATCCGGAATCCGATGCCGATAGCATCAAAGAGTGGGA 360
Query 354 ATTGGATTTCTGCTCGAGGCCTATTCTTGATTCCAGAGGGAAAAAGATTTGGGAGCTTGT 413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGGATTTCTGCTCGAGGCCAATTCTTGATTCCAGAGGGAAAAAGATTTGGGAGCTTGT 420
Query 414 GGTTTGTGATGCTTCACTCTCCCTTCAAGTCACTAAATACTTCCCCAATAACGTCATTAA 473
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 GGTTTGTGATGCTTCACTCTCCCTTCAAGTCACTAAATACTTCCCCAATAATGTCATTAA 480
Query 474 TAGTATTACTCTCAAAGACGCCATTGTTACCATCACTCAAGACTTGGGTGTTCCTCTTCC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAGTATTACTCTCAAAGACGCCATTGTTACCATCACTCAAGACTTGGGTGTTCCTCTTCC 540
Query 534 TGAGAAGATTCGCTTCTTCAGGTCACAGATGCAAACCATTATCACAAAAGCTTGCAAAGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGAGAAGATTCGCTTCTTCAGGTCACAGATGCAAACCATTATCACAAAAGCTTGCAAAGA 600
Query 594 GCTTGCCATAAAGGCAGTGCCTAGTAAACGGTGTCTGTCTCTGTTTCTGTGGTTGCAAGA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTTGCCATAAAGGCAGTGCCTAGTAAACGGTGTCTGTCTCTGTTTCTGTGGTTGCAAGA 660
Query 654 ACGTTATGACACTGTGTACACGCGTCATCCCGG-TTTCCAAAAGGGATCATTGCCTCTTC 712
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 661 ACGTTATGACACTGTGTACACGCGTCATCCCGGGTTTC-AAAAGGGATCATTGCCTCTTC 719
Query 713 TGTCTCTCGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAATGGG 772
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTCTCTAGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAATGGG 779
Query 773 CATTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAGATTTTGATGAGAAGT 832
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 780 CATTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAAACTTTGACGAGAAGT 839
Query 833 TTGTGTTTGGTGCTAGCTTAGACTTGGATTTACTTGGCATTGAAGTGGATGAGAATACTC 892
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 840 TTGTGTTTGGTGCTACCTTAGACTTGGATTTGCTTGGCATTGAAGTGGATGAGAATACAC 899
Query 893 TGATTCCTGGTCTCTCTGTTGCTACTTCACGTGCCAAACCTCTAGCAGCTTGGATGAATG 952
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 900 TGATTCCTGGTCTCTCTGTTGCTACTTCACGAGCCAAACCTCTAGGAGCTTGGATGAATG 959
Query 953 GGCTTGAAGTATGTTCGATTGAAGCAGACAGTTCCAAAGGATGTTTGATTCTATCAGTTG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGCTTGAAGTATGTTCGATTGAAGCAGACAGTTCCAAAGGATGTTTGATTCTATCAGTTG 1019
Query 1013 GGATCGCTACAAGGTATGTCTACGCGACCTATAAGAAGACCCCTGTCACTACTGATGAAG 1072
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGATCGCGACAAGGTATGTCTACGCGACCTATAAGAAGACCCCTGTCACTACTGATGAAG 1079
Query 1073 CTGAAGCTTGGGAATCTGCAAAGAAAACAAGTGGAGGTTTGCATTTTCTTGCAATTCAAG 1132
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 CTGATGCTTGGGAATCTGCAAAGAAAGCAAGTGGAGGTTTGCATTTTCTTGCAATTCAAG 1139
Query 1133 ATGACTTAGATTCTGATGACTGTGTTGGCTTTTGGCTTCTTATTGATTTGCCACCACCCC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGACTTAGATTCTGATGACTGTGTTGGCTTTTGGCTTCTTATTGATTTGCCACCACCCC 1199
Query 1193 CTGTTTGATTTCCCTTTTGATAAATGTTTATACCATATTTTGCCATTTAGTAACA--GAT 1250
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 CTGTTTGATTTCCCCTTTGATAAATGTTTATACCATATTTTGCCATTTAGTAACAAAGAT 1259
Query 1251 TTCTGACATGCTTGAATTTGAACAAATTG 1279
|||| ||| ||||||||||||||||||||
Sbjct 1260 TTCTCACAAGCTTGAATTTGAACAAATTG 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47806137918
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5