BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08020.1
Length=2924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478143 jgi|Araly1|478143|fgenesh2_kg.3__844__AT3G08020.1 4669 0.0
Ahg935612 jgi|Araly1|935612|scaffold_403600.1 422 9e-117
Ahg895777 jgi|Araly1|895777|Al_scaffold_0006_3773 171 4e-41
Ahg478142 jgi|Araly1|478142|fgenesh2_kg.3__843__AT3G08010.1 108 3e-22
Ahg348307 jgi|Araly1|348307|fgenesh1_pg.C_scaffold_5001699 60.2 8e-08
> Ahg478143 jgi|Araly1|478143|fgenesh2_kg.3__844__AT3G08020.1
Length=2890
Score = 4669 bits (2528), Expect = 0.0
Identities = 2804/2928 (96%), Gaps = 55/2928 (2%)
Strand=Plus/Plus
Query 14 TATCTCTGCGTCCAAACCAAAACTCACAGAGCTCACCAAAAGAGACGACCCTTTTTCTAC 73
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1 TATCTCTGCGTCCAAACCAAAACTCACAGAGCTCA-CAAAAGAGACGACCC--TTTCTAC 57
Query 74 TACACAAAGAAACTACTGATTAATTCATTAATACTAATAGAGTTATTAACATTACCGATC 133
|||||| | ||||| || ||||||||||||||||| ||| | ||||| |||||| |||||
Sbjct 58 TACACACACAAACTGCTAATTAATTCATTAATACTTATA-A-TTATT-ACATTATCGATC 114
Query 134 CTTATATTATTA-TAT---TAAA-T--A-T-aaaaaaaaaaa-aGAGAAAGAAGCGATCT 183
|||||||||||| ||| |||| | | | ||||||||||| |||||||||||||||||
Sbjct 115 CTTATATTATTATTATGAATAAATTAAATTAAAAAAAAAAAAGAGAGAAAGAAGCGATCT 174
Query 184 CTAAAAATCAAAATCTCGAtttttttttttttttttCCGTTTGGAGGCGAGAGGAATAAT 243
|| |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 175 CT-AAAATC-AAATCTCGA-----TTTTTTTTTTTTCCGTTTGGAGGCGAGAGGAATAA- 226
Query 244 TTTTGTTGGGGTGAGGATATATGGGATGGCCTTTCACGTAGCTTGTCCAATTACATGTCG 303
|| || | | ||| |||||||||||||||||||| ||||||||||||||
Sbjct 227 --TT-TT----T---G---TAT---ATGGCCTTTCACGTAGCTTGCCCAATTACATGTCG 270
Query 304 TCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAACA 363
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 271 TCGGATCTGCAATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGAAAGA 330
Query 364 TAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCC-TGCTGTTTCTT 422
|||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 331 GGAGTTTTTGAAAGAGGTTAATCGAGTGGAGGAGTTTCTCAAGGATCCTTG-TGTTTCTT 389
Query 423 CTAATGTTTTT-ATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCTCCT 481
|||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 390 CTAAGGTTTTTGA-TGGAGGTACCGTTCAGGTTAGGGTTCCTAAGGTTGTTCCTGCTCCT 448
Query 482 CAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGTGTTGATGAATTG 541
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 CAGACGGTTTCGATTTTGGGGGTTGGAGATGGTGCTATTGGTTCTGGAGTTGATGAATTG 508
Query 542 GCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACT 601
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GCGGAGGAAGCTTCGGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTGCTGTTACG 568
Query 602 GTCGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGTGTCAATGACCTTACCTCA 661
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 569 GTTGAAGCTGCTGAGGATTATGCTCGGAGGTTTGAATCTGGGGTCAATGACCTTACCTCA 628
Query 662 AACGATCATGCTGGTGAAGAATTAGGCCACTCCGGCATGAATATAATGTGCAGAATGTGC 721
||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 629 AACGATCATGCTGGTGAAGAAGTAGTTCACTCCGGCATGAATATAATGTGTAGAATGTGC 688
Query 722 TTCCTAGGAGAAGGTGAAGGAAGTGATAGAGCAAGGAGGATGCTTTCTTGTAAAGA-CTG 780
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||| | |||
Sbjct 689 TTTCTAGGAGAAGGTGAAGGAAGTGAGAGAGCAAGGAGGATGCTTTCCTGTAAA-ACCTG 747
Query 781 TGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TGGAAAGAAGTACCACAAGAATTGTTTAAAGTCTTGGGCTCAACATAGAGATTTATTTCA 807
Query 841 TTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TTGGAGTTCATGGAGTTGTCCCTCTTGCCGGGTTTGTGAGGTCTGCCGTAGAACAGGAGA 867
Query 901 TCCTAACAAGTTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACA 960
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TCCTAACAAATTCATGTTCTGCAAAAGGTGTGATGCTGCTTACCATTGTTATTGCCAACA 927
Query 961 TCCTCCACACAAGAATGTTAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCA 1020
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TCCTCCACACAAGAATGTAAGTTCTGGGCCATATCTCTGCCCAAAGCATACAAGATGCCA 987
Query 1021 CAGCTGTGATTCTACTGTCCCTGGAAATGGCCTGAGTGTCAGGTGGTTTTTATCATATAC 1080
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 988 CAGCTGTGATTCTACTGTCCCTGGAAATGGCCTAAGTGTCAGGTGGTTTTTATCATATAC 1047
Query 1081 TTGCTGTGATGCTTGTGGCAGATTGTTTGTTAAGGGAAATTATTGCCCTGTATGCTTGAA 1140
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1048 TTGCTGTGATGCTTGTGGCAGATTGTTTGTGAAGGGAAATTATTGCCCTGTATGCTTGAA 1107
Query 1141 GGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GGTGTATAGGGATTCGGAATCAACCCCAATGGTATGCTGCGATATTTGTCAACGCTGGGT 1167
Query 1201 GCATTGCCATTGTGATGGAATAAGTGATGACAAATATATGCAGTTTCAAGTTGATGGAAA 1260
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1168 GCATTGCCATTGCGATGGAATAAGTGATGACAAATATCTGCAGTTTCAAGTTGATGGAAA 1227
Query 1261 GCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GCTACAATATAAATGTGCCACATGCCGTGGGGAGTGTTATCAGGTGAAGGATCTTCAGGA 1287
Query 1321 TGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGCAGTTCAAGAACTTTGGAAGAAAAAAGATGTGGTGGACAAAGAGTTGATTGCTAGTTT 1347
Query 1381 AAGGGCTGCTGCTGGTTTGCCAACAGAGGAGGAAATATTTTCGATATTTCCATTTTCAGA 1440
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1348 AAGGGCTGCTGCTGGTTTGCCAACAGACGAGGAAATATTTTCGATATTTCCATTTTCAGA 1407
Query 1441 TGATGAAGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCGATTAAAGGTTTGGT 1500
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1408 TGATGATGAAAATGGACCCGTATCTGGGCGCTCACTGAAGTTTTCTATTAAAGGTTTGGT 1467
Query 1501 GGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTCAAGTAAAAAGCATGC 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1468 GGAAAAATCCCCAAAGAAAAGCAAGGAGTATGGGAAACACTCTTTAAGTAAAAAGCATGC 1527
Query 1561 TAGTAAAAAAGGTAGTCACACTAAGTTGGAGCCTGAAGTTCATCAGGAGATTGGATCTGA 1620
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1528 TAGTAAAAAAGGTAGTCACACTAAGTTAGAGCCTGAACTTCATCAGGAGATTGGATCTGA 1587
Query 1621 GAGACGCCGACTAGGTGGTGTTAGAATTGATAATGTGGGTTTTCAGATAAACGAACAATC 1680
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1588 GAGACGCCGACTAGGTGGTGCTAGAATTGATAATGTGGGGTTTCAGATAAACGAACAATC 1647
Query 1681 GGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACA 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AGACGTTAATTCTTCTGTAGCTGGAATTTGCTCAACACATGAACCTAAGATTGTAAAACA 1707
Query 1741 CAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTGAGAAT 1800
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1708 CAAGAGGGTTGATGATGTTATGGTGACTGATGAAGAAAAGCCGTCAAGGATAGTCAGAAT 1767
Query 1801 AAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 AAAGTGTAGCAAGCCTCATGATTCTGATAGCGAGGATACCCTAAGGAATGCAGGGGAGGA 1827
Query 1861 AAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAG 1920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 GAAATCTGTAAAGGCAAAGAAGTTGGTTATTAATCTGGGTGCTAGGAAAATAAATGTCAG 1887
Query 1921 TGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGAGACAAAGATCAGTCCACTTT 1980
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1888 TGGTTCTTCGAAGTCCAATGTTGTTTCTCATTTATCGAGGGACAAAGATCAGTCCACTTT 1947
Query 1981 GGGTGGGGATAAAGTTGATCAGACTGGGGAAGTAAGAACCCTGAAGATCTCTGGAAGGTT 2040
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1948 GGGTGGAGATAAAGTTGATCAGACTGGCGAAGTAAGAACCCTGAAGATCTCTGGAAGGTT 2007
Query 2041 TGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTC-AGTCACTCAGTTCCCTG 2099
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 2008 TGGGAAAACTCAATCTGAAGGAAGTAAAGCTACATTTGGGTCGA-TCACACAGTTCCCTG 2066
Query 2100 CTGCATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCATTAC 2159
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2067 C---ATCAACAAGTGAAGGAAATCATGTGGATGACAAAACATCCATCTCACCAGCGTTAC 2123
Query 2160 AGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGA 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 AGAAAGAAGCAAGACCTCTGCTGAAATTTAAACTCAGGAAACCTAATTCAGGAGATCAGA 2183
Query 2220 CATCTTCGGTTACAACGCAGTCTGAAGATGAAAAATTGAGTTCTGCAAAGGGCCAAAGAT 2279
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2184 CATCTTCGGTTACAACGCAGTCTGAAGATGAAAAACTGAGTTCTGCAAAGGGCCAAAGAT 2243
Query 2280 CAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAAGACGGTGAAG 2339
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2244 CAAAGAGAAAGAGACCTTCAAGCTTAGTGGACATGGCTTCATTGAAAGAGGACGGTGAAG 2303
Query 2340 CTACAACACATTCTCATCAGGATAATTCAAGGAACGACGAGATGATGGATGCTAACTGGA 2399
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2304 CTACAACACATTCTCATCAGGATAGTTCAAGGAATGACGAGATGATGGATGCTAACTGGA 2363
Query 2400 TTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAA 2459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 TTTTGAAAAAGTTGGGTAAAGATTCAATAGGAAAGAGAGTCGAAGTCCATGGATCTCAAA 2423
Query 2460 ACTCATGGCGTAAGGGAACAGTGACAGACGTTTCTGGAGACACATCCACATTGTCGGTTT 2519
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2424 ACTCATGGCATAAGGGAACAGTGACAGACGTTTCTGAAGACACATCCACATTGTCGGTTT 2483
Query 2520 CTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATAC 2579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2484 CTCTAGATGATGGAAGCATCAAGACATTTGAACTTGGGAAGCACAGTGTCCGCTTCATAC 2543
Query 2580 CGCAAAAGCAAAAGAGGTCAAGGAGCTGATTGGACCATCGAGCAGCGCTTTAGTCACTAA 2639
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2544 CGCAAAAGCAAAAGAGGTCGAGGAGCTGATTGGACCATCGAGCAGTGCTTTAGTCACTAA 2603
Query 2640 CTTTCTGCATGCGAGCCATGAAGAAGATTTGATTGTTGGGGCATTTTATACTATTTA-AG 2698
|||||||| || |||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 2604 CTTTCTGCGTGTGAGCCATGAAGAAGATTTGATTGTTGGGGCATTTCATACT-TTTATAG 2662
Query 2699 CTCTTTCTGGTGGTAATTATCAGTAAGATGGAAAGTGCCAAACTGTGTAGATATTACTTG 2758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 CTCTTTCTGGTGGTAATTATCAGTAAGATGGAAAGTGCCAAACTGTGTAGATATTACTTG 2722
Query 2759 TGGTGTTGAAGGTAGCTATGATCTTGTTAAGACTCGATTGGTCGTTCCCTGTAACTTACT 2818
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2723 TGGTATTGAAGGTAGCTATGATCTGGTTAAGACTCGATTGGTCGTTCCCTGTAACTTACT 2782
Query 2819 CACTTCCTAGGTCCATAGTTTTTGCAGACTCATGTAACAATTTGTTCAAATTCAAGCATG 2878
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2783 CACTTGCTAGGTCCGTAGTTTTTGCAGACTCATGTAACAATTTGTTCAAATTCAAGCTTG 2842
Query 2879 TCAGAAATCT--GTTACTAAATGGCAAAATATGGTATAAACATTTATC 2924
| |||||||| ||||||| | ||||||||||||||||||||| ||||
Sbjct 2843 TGAGAAATCTTTGTTACTAGACGGCAAAATATGGTATAAACATATATC 2890
> Ahg935612 jgi|Araly1|935612|scaffold_403600.1
Length=2072
Score = 422 bits (228), Expect = 9e-117
Identities = 304/338 (90%), Gaps = 16/338 (5%)
Strand=Plus/Plus
Query 300 GTCGTCGGATTTGCCATTGCTCCTTAGGGTTTTCTCGGGATCTCCGTGGAGCCAATGCGA 359
|||||||||| ||| |||||||||||||| || | ||| ||||||||||||||||
Sbjct 92 GTCGTCGGATCTGCTATTGCTCCTTAGGG--TT-T-----TCT-CGTGGAGCCAATGCGA 142
Query 360 AACATAAGTTTTTGAAAGAGGTTATTCGAGTGGAGGAGTTTCTCAAGGATCC-TGCTGTT 418
|| | |||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 143 AAGAGGAGTTTTTGAAAGAGGTTAATCGAGTGGAGGAGTTTCTCAAGGATCCTTG-TGTT 201
Query 419 TCTTCTAATGTTTTTATTGGAGGTACCGTTCAAGTTAGGGTTCCTAAGGTTGTTCCTGCT 478
||||| || ||||| | ||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 202 TCTTCCAAGGTTTTCAATGGAGATACCGTTCAGGTTAGGGTTCCTAAGGTAGTTCCTGCT 261
Query 479 CCTCAGACGGTTTCGATTTTGGGGG-T----TGGAGATGGTGCTATTGGTTCTGGTGTTG 533
|||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 262 CCTCAGACGGCTTCGATTTTGGGGGTTGGAATGGAGATGGTGCTATTGGTTCTGGAGTTG 321
Query 534 ATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAGACAAGCTG 593
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 322 ATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAACGTGTTGCTCTTCAGAAACAAGCTG 381
Query 594 CTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGAGG 631
||||||| |||||||||||||||||||||||||| |||
Sbjct 382 CTGTTACGGTCGAAGCTGCTGAGGATTATGCTCGTAGG 419
> Ahg895777 jgi|Araly1|895777|Al_scaffold_0006_3773
Length=294
Score = 171 bits (92), Expect = 4e-41
Identities = 120/132 (91%), Gaps = 8/132 (6%)
Strand=Plus/Plus
Query 510 ATGGTGCTATTGGTTCTGGTGTTGATGAATTGGCGGAGGAAGCTTCTGCTCAGAAGAAAC 569
||||||||||||||||||| ||||||||||||||||||||| | || |||||||
Sbjct 1 ATGGTGCTATTGGTTCTGGAGTTGATGAATTGGCGGAGGAA------G--CATAAGAAAC 52
Query 570 GTGTTGCTCTTCAGAGACAAGCTGCTGTTACTGTCGAAGCTGCTGAGGATTATGCTCGGA 629
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 53 GTGTTGCTCTTCAGAGACAAGCTGCTGTTACGGTCGAAGCTGCTGAGGATTATGCTCGTA 112
Query 630 GGTTTGAATCTG 641
||||||||||||
Sbjct 113 GGTTTGAATCTG 124
> Ahg478142 jgi|Araly1|478142|fgenesh2_kg.3__843__AT3G08010.1
Length=1288
Score = 108 bits (58), Expect = 3e-22
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 2856 CAATTTGTTCAAATTCAAGCATGTCAGAAATCT--GTTACTAAATGGCAAAATATGGTAT 2913
|||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1288 CAATTTGTTCAAATTCAAGCTTGTGAGAAATCTTTGTTACTAAATGGCAAAATATGGTAT 1229
Query 2914 AAACATTTATC 2924
|||||||||||
Sbjct 1228 AAACATTTATC 1218
> Ahg348307 jgi|Araly1|348307|fgenesh1_pg.C_scaffold_5001699
Length=2037
Score = 60.2 bits (32), Expect = 8e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 269 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 300
||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTTTCACGTAGCTTGTCCAATTACATG 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110385530010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5