BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08030.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478145 jgi|Araly1|478145|fgenesh2_kg.3__846__AT3G08030.2 1899 0.0
> Ahg478145 jgi|Araly1|478145|fgenesh2_kg.3__846__AT3G08030.2
Length=1427
Score = 1899 bits (1028), Expect = 0.0
Identities = 1137/1190 (96%), Gaps = 5/1190 (0%)
Strand=Plus/Plus
Query 229 CTTCTGAAGGTTATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 288
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTTCTTCAGGATATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 298
Query 289 AGAAAACAGTTCTACTAGGCAAAAACGCCTTGCCCGAATGGGAAACCACCGGTTTCGTCG 348
|||||||||||||| | ||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 299 AGAAAACAGTTCTAATCGGCAAAACCGCCTTACCCGAATGGGAAATCACCGGTTTCGTCG 358
Query 349 AGTACATCGCCGGCGGTCCTCAGCCAGGAGGCATGTACTTCCCAGTGGCTCATGGAGTCC 408
||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 359 AGTACATCGCCGGCGGTCCTCAGCCGGGAGGCATGTTTTTTCCAGTGGCTCATGGAGTCC 418
Query 409 ACGCCGTGAGGCTCGGAAACGAAGCTACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 468
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 ACGCCGTGAGGCTCGGAAACGAAGCCACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 478
Query 469 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAAGTTCTTAGAG 528
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAGGTTCTTAGAG 538
Query 529 TCTCTGTACCTTCTCAGTCCGGTGACTTGCCACTTCAAACACTTTACAACAGTTTCGGAG 588
||||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||||||
Sbjct 539 TCTCTGTGCCTTCTCAGTTTGGTGACTTGCCGCTTCAGACACTTTACAACAGCTTCGGAG 598
Query 589 GTGACGTGTACGCTTGGGCCTTCGTCGCCAAGACTTCTCAAGTTACTGTGACTTTCCACA 648
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 599 GTGACGTGTACGCTTGGGCCTTCGTCGCTAAGACTTCTCAAGTTACTGTGACTTTCCATA 658
Query 649 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 718
Query 709 AGCTTGTTCATCCAATCTACACCAGAGGGAACTTGGTGAAGAATGGAGGGTTCGAAGAAG 768
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 719 AGCTTGTTCGTCCAATCTACACCAAAGGGAACTTGGTGAAGAACGGAGGGTTCGAAGAAG 778
Query 769 GTCCTCACCGTCTAGTGAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 828
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTCCTCACCGTCTTGTAAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 838
Query 829 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 898
Query 889 CTAAGTACTTTAATGTCCCCTTTGGACATGCTGCGATCGAGCTAGTTGCAGGCAAAGAAA 948
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 899 CTAAGTACTTTAATGTCCCCTTTGGCCATGCTGCGATCGAGCTCGTTGCAGGCAAAGAAA 958
Query 949 GTGCCATTGCACAAGTCATTAGAACCTCTCCTGGTCAAACTTACACCCTCTCCTTCGTCG 1008
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 959 GTGCCATTGCACAAGTCATTAGAACTTCACCTGGTCAAACTTACACCCTCTCCTTCGTTG 1018
Query 1009 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCAGAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCA-AG 1077
Query 1069 -ATACACTCAAAGTACCACACACTTCCGTTGGTGGAGGTCATGTCAAGACCGCGAGTTTC 1127
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1078 GATACACTCAAAGTGCCACACACTTCCGTTGGTGGAGGTCATTTTAAGACCGCGAGTTTC 1137
Query 1128 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1197
Query 1188 AAGAAGACTGATACTGTATCTTTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1247
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGAAGACTGATATTGGATCTCTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1257
Query 1248 GTCGCTTAGATTAAGTTTACTCTTTATGACAA--CTGCA-CTTGTGTTCTTAGACTGGTC 1304
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1258 GTCGCTTAGATTAAGTTTACTCTTTATCACAAGTCTGCATCTTGTGTTCTTAGACTGGTC 1317
Query 1305 ATGGACTTGGTGCCTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTGAGTTATTGTCATC 1364
||||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 1318 ATGGACTTGGTTCTTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTAAGTTATAGCCATC 1377
Query 1365 AAGTTAAAATGAATGATATATTATTGTAATATGAAATGTTTTGAGTTAAA 1414
| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1378 ACGTTAAAATGAATGATATATTATTGTTATATGAGATGTTTTGAGTCAAA 1427
Score = 202 bits (109), Expect = 6e-51
Identities = 122/128 (95%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 121 CCTCACTCACTCTTCTCCGAGGAAGAACAACAGAGACAATGGCGGTTCCCAAAGCCATTA 180
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 CCTCACTCACTCTTCTCCGAGGAAGAACAAAAGAGACAATGGCGGCTCCCAAAGCCATTA 60
Query 181 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTCGGAGCTCCTGCTTCTGAAGGT- 239
||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 61 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTTGGAGCCCCTGCTTATGAAGGTA 120
Query 240 TATCTTCG 247
||||||||
Sbjct 121 TATCTTCG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5