BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G08030.1 Length=1439 Score E Sequences producing significant alignments: (Bits) Value Ahg478145 jgi|Araly1|478145|fgenesh2_kg.3__846__AT3G08030.2 1899 0.0 > Ahg478145 jgi|Araly1|478145|fgenesh2_kg.3__846__AT3G08030.2 Length=1427 Score = 1899 bits (1028), Expect = 0.0 Identities = 1137/1190 (96%), Gaps = 5/1190 (0%) Strand=Plus/Plus Query 229 CTTCTGAAGGTTATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 288 ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CTTCTTCAGGATATCTTCGTAATGGAAACTTCGAAGAGTCACCAAAGAAAACCGACATGA 298 Query 289 AGAAAACAGTTCTACTAGGCAAAAACGCCTTGCCCGAATGGGAAACCACCGGTTTCGTCG 348 |||||||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||| Sbjct 299 AGAAAACAGTTCTAATCGGCAAAACCGCCTTACCCGAATGGGAAATCACCGGTTTCGTCG 358 Query 349 AGTACATCGCCGGCGGTCCTCAGCCAGGAGGCATGTACTTCCCAGTGGCTCATGGAGTCC 408 ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 359 AGTACATCGCCGGCGGTCCTCAGCCGGGAGGCATGTTTTTTCCAGTGGCTCATGGAGTCC 418 Query 409 ACGCCGTGAGGCTCGGAAACGAAGCTACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 468 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 419 ACGCCGTGAGGCTCGGAAACGAAGCCACAATCTCTCAGAAGTTAGAAGTGAAGCCAGGTT 478 Query 469 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAAGTTCTTAGAG 528 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 479 CTCTCTACGCACTCACGTTTGGTGCGTCGAGAACTTGTGCACAAGACGAGGTTCTTAGAG 538 Query 529 TCTCTGTACCTTCTCAGTCCGGTGACTTGCCACTTCAAACACTTTACAACAGTTTCGGAG 588 ||||||| |||||||||| ||||||||||| ||||| |||||||||||||| ||||||| Sbjct 539 TCTCTGTGCCTTCTCAGTTTGGTGACTTGCCGCTTCAGACACTTTACAACAGCTTCGGAG 598 Query 589 GTGACGTGTACGCTTGGGCCTTCGTCGCCAAGACTTCTCAAGTTACTGTGACTTTCCACA 648 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 599 GTGACGTGTACGCTTGGGCCTTCGTCGCTAAGACTTCTCAAGTTACTGTGACTTTCCATA 658 Query 649 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATCCTGGAGTTCAAGAAGATCCTGCTTGTGGTCCTTTGTTGGACGCTGTCGCCATTAAAG 718 Query 709 AGCTTGTTCATCCAATCTACACCAGAGGGAACTTGGTGAAGAATGGAGGGTTCGAAGAAG 768 ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 719 AGCTTGTTCGTCCAATCTACACCAAAGGGAACTTGGTGAAGAACGGAGGGTTCGAAGAAG 778 Query 769 GTCCTCACCGTCTAGTGAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 828 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GTCCTCACCGTCTTGTAAACTCCACACAAGGAGTCCTACTCCCACCTAAACAAGAAGATC 838 Query 829 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 888 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TCACATCACCTTTACCTGGTTGGATCATAGAGTCACTCAAGGCAGTGAAATTCATAGACT 898 Query 889 CTAAGTACTTTAATGTCCCCTTTGGACATGCTGCGATCGAGCTAGTTGCAGGCAAAGAAA 948 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 899 CTAAGTACTTTAATGTCCCCTTTGGCCATGCTGCGATCGAGCTCGTTGCAGGCAAAGAAA 958 Query 949 GTGCCATTGCACAAGTCATTAGAACCTCTCCTGGTCAAACTTACACCCTCTCCTTCGTCG 1008 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 959 GTGCCATTGCACAAGTCATTAGAACTTCACCTGGTCAAACTTACACCCTCTCCTTCGTTG 1018 Query 1009 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCAGAG 1068 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1019 TTGGAGATGCTAAGAATGACTGCCATGGTTCCATGATGGTTGAAGCTTTTGCAGCCA-AG 1077 Query 1069 -ATACACTCAAAGTACCACACACTTCCGTTGGTGGAGGTCATGTCAAGACCGCGAGTTTC 1127 ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 1078 GATACACTCAAAGTGCCACACACTTCCGTTGGTGGAGGTCATTTTAAGACCGCGAGTTTC 1137 Query 1128 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 AAGTTCAAGGCGGTTGAGGCAAGAACTAGAATTACTTTCTTCAGTGGTTTTTACCATACC 1197 Query 1188 AAGAAGACTGATACTGTATCTTTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1247 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct 1198 AAGAAGACTGATATTGGATCTCTATGTGGTCCTGTCATTGACGAGATTGTGGTTTCTCAT 1257 Query 1248 GTCGCTTAGATTAAGTTTACTCTTTATGACAA--CTGCA-CTTGTGTTCTTAGACTGGTC 1304 ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 1258 GTCGCTTAGATTAAGTTTACTCTTTATCACAAGTCTGCATCTTGTGTTCTTAGACTGGTC 1317 Query 1305 ATGGACTTGGTGCCTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTGAGTTATTGTCATC 1364 ||||||||||| | |||||||||||||||||||||||||||||||| |||||| | |||| Sbjct 1318 ATGGACTTGGTTCTTTGCTTTGTATGTCTTGGCTCCTTTTGGAATTAAGTTATAGCCATC 1377 Query 1365 AAGTTAAAATGAATGATATATTATTGTAATATGAAATGTTTTGAGTTAAA 1414 | ||||||||||||||||||||||||| |||||| ||||||||||| ||| Sbjct 1378 ACGTTAAAATGAATGATATATTATTGTTATATGAGATGTTTTGAGTCAAA 1427 Score = 202 bits (109), Expect = 6e-51 Identities = 122/128 (95%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 121 CCTCACTCACTCTTCTCCGAGGAAGAACAACAGAGACAATGGCGGTTCCCAAAGCCATTA 180 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1 CCTCACTCACTCTTCTCCGAGGAAGAACAAAAGAGACAATGGCGGCTCCCAAAGCCATTA 60 Query 181 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTCGGAGCTCCTGCTTCTGAAGGT- 239 ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| Sbjct 61 TTCTACCTATCTTGCTACTCATCTGTGGTGCTGCTCTTGGAGCCCCTGCTTATGAAGGTA 120 Query 240 TATCTTCG 247 |||||||| Sbjct 121 TATCTTCG 128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53821516185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5