BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08040.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478146 jgi|Araly1|478146|fgenesh2_kg.3__847__AT3G08040.1 2813 0.0
> Ahg478146 jgi|Araly1|478146|fgenesh2_kg.3__847__AT3G08040.1
Length=1847
Score = 2813 bits (1523), Expect = 0.0
Identities = 1702/1786 (95%), Gaps = 22/1786 (1%)
Strand=Plus/Plus
Query 1 ACTATAAACGTTCCTTTTGCTTCCCCGATTCTTCGAAACACTTATTGATATCTTCAGA-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTATAAACGTTCCTTTTGCTTCCCCGATTCTTCGAAACACTTATTGATATCTTCAGATC 60
Query 59 CACAACAAATTAATTACAGAGACAGTTACAG-AGGAAAAAGATCTATGACGGAAACTGGT 117
||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||
Sbjct 61 CACAACAAATTAATTACAGAGACAGTTAC-GAAGG-AAAAGATTTATGACGGAAACTGGT 118
Query 118 GATGATCTTGCTACGG-T--GA--A----G---AAGCCAATCCCATTTCTCGTTATCTTC 165
|||||||||||||||| | | | | ||| ||||||||||||| |||||||||
Sbjct 119 GATGATCTTGCTACGGTTCCAACCAGCGTGACCAAGTCAATCCCATTTCTTGTTATCTTC 178
Query 166 AAAGATTTAAGACATGTATTCAGTAGGGACACAACTGGGCGAGAGATTCTAGGCATCGCG 225
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 179 AAAGATTTAAGACATGTATTCAGTAGGGATACAATTGGGCGAGAGATTCTAGGCATGGCG 238
Query 226 TTTCCAGCAGCTTTGGCTTTAGCTGCTGATCCAATCGCTTCTCTGATTGATACCGCTTTT 285
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTTCCAACAGCTTTGGCTTTAGCTGCTGATCCAATCGCTTCTCTGATTGATACCGCTTTT 298
Query 286 GTCGGGCGTTTAGGAGCGGTTCAGCTAGCGGCGGTTGGAGTTTCCATTGCCATATTCAAT 345
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 GTCGGGCGTTTAGGAGCGGCTCAGCTAGCGGCGGTTGGAGTCTCCATTGCCATATTCAAT 358
Query 346 CAAGCTTCTAGAATTACGATATTCCCACTTGTGAGCCTCACAACTTCATTTGTGGCAGAG 405
||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 359 CAAGCATCTAGAATTACGATGTTCCCACTTGTGAGCCTCACGACTTCGTTTGTGGCAGAG 418
Query 406 GAAGACACGATGGAGAAGATGAAAGAAGAAGCAAACAAAGCCAATCTTGTTCATGCAGAA 465
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 419 GAAGACACGATGGAGAAGATGAAAGAAGAAGCGAACAAAGCCAGTCTTGTTCATGCAGAA 478
Query 466 ACTATACTTGTTCAAGATTCTTTGGAAAAGGGCATTTCTTCACCTACAAGTAACGATACC 525
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 479 ACTATACTTGTTCAAGATTCCTTGGAAAAGGGCATTTCTTCACCTACAAGTAACAATACC 538
Query 526 AACCAGCCACAGCAACCT-CCAGCTCCGGATACAAAGTCAAATAGCGGAAACAAATCGAA 584
||||||||||||||| || |||||| |||||||||||||||||| ||||||||| |||
Sbjct 539 AACCAGCCACAGCAA-CTCCCAGCTTTGGATACAAAGTCAAATAGTGGAAACAAAGCGAC 597
Query 585 TAAAAAGGAGAAGAGGACCATTAGAACAGCATCAACAGCTATGATCTTGGGGTTAATCCT 644
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 598 TAAAAAGGGGAAGAGGACCATTAGAACAGCATCAACATCTATGATATTGGGGTTAATCCT 657
Query 645 TGGCCTTGTGCAAGCTATTTTCTTGATTTTCAGTTCAAAGTTGCTTCTAGGCGTCATGGG 704
|||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 658 CGGCCTTGTGCAAGCTATTTTCTTGATTTTCAGCTCCAAGTTGCTTCTAGGCTTCATGGG 717
Query 705 AGTGAAACCAAATTCACCAATGTTATCACCAGCACACAAGTACTTGAGCATACGAGCTTT 764
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 AGTGAAACCAAATTCGCCAATGTTATCACCAGCACACAAGTACTTGAGTATACGAGCTTT 777
Query 765 GGGGGCTCCTGCATTGCTTCTATCTCTTGCTATGCAAGGCATCTTTCGTGGATTCAAGGA 824
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 778 GGGGGCCCCTGCATTGCTTCTATCTCTTGCTATGCAAGGCGTCTTTCGTGGCTTCAAGGA 837
Query 825 CACCAAAACTCCTCTCTTTGCCACTGTCGTAGCAGATGTTATCAACATAGTTCTCGACCC 884
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 TACCAAAACTCCTCTCTTTGCCACTGTCGTAGCAGATGTTATCAACATCGTTCTCGACCC 897
Query 885 CATCTTCATTTTTGTGCTTCGTCTAGGGATCATCGGTGCAGCCATTGCCCATGTCATTTC 944
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 898 CATCTTCATTTTTGTGCTTCGTCTCGGGATCAGCGGTGCAGCCATTGCCCATGTCATTTC 957
Query 945 TCAGTACTTCATGACTCTAATATTGTTCGTCTTCCTCGCAAAGAAAGTTAATTTGATTCC 1004
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 TCAGTACTTCATGACTCTAATATTGTTCGTCTGCCTCGCAAAGAAAGTTAATTTGATTCC 1017
Query 1005 ACCAAACTTCGGGGATTTGCAGTTTGGAAGGTTCCTTAAAAATGGGCTACTATTGCTGGC 1064
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1018 ACCAAACTTCGGGGATTTGCAGTTCGGAAGGTTCCTTAAAAATGGGATACTATTGCTGGC 1077
Query 1065 GAGGACCATAGCAGTGACGTTTTGTCAGACCTTAGCAGCAGCAATGGCGGCGCGGCTGGG 1124
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1078 GAGGACTATAGCAGTGACGTTTTGTCAGACCTTAGCAGCAGCAATGGCGGCTCGGCTGGG 1137
Query 1125 TACAACACCAATGGCTGCTTTTCAGATTTGTTTACAAGTATGGTTAACTTCTTCTCTTCT 1184
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1138 TACAACACCAATGGCTGCTTTTCAGATTTGTTTACAAGTCTGGTTAACATCTTCTCTTCT 1197
Query 1185 CAATGATGGTCTTGCCGTTGCTGGTCAGGCGATTCTGGCTTGTTCGTTTGCTGAGAAGGA 1244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 CAATGATGGTCTTGCCGTTGCTGGTCAGGCGATCCTGGCTTGTTCGTTTGCTGAGAAGGA 1257
Query 1245 CTATAACAAAGTGACTGCTGTTGCATCCCGTGTTCTACAGATGGGTTTTGTGTTAGGACT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTATAACAAAGTGACTGCTGTTGCATCCCGTGTTCTACAGATGGGTTTTGTGTTAGGACT 1317
Query 1305 TGGACTGTCCGTTTTTGTTGGACTAGGTCTCTACTTTGGTGCCGGAGTTTTCTCCAAGGA 1364
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1318 TGGACTGTCCGTTTTTGTTGGACTAGGTCTCTACTTTGGTTCCGGAATATTCTCCAAGGA 1377
Query 1365 CCCTGCTGTTATTCACCTCATGGCCATCGGAATACCGTTTATAGCAGCAACGCAGCCAAT 1424
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1378 CCCTGCTGTTATTCACCTCATGACCATTGGAATACCGTTTATAGCAGCCACGCAGCCAAT 1437
Query 1425 AAACTCTCTCGCCTTTGTATTGGATGGAGTCAATTTTGGAGCATCTGATTTTGCTTACAC 1484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAACTCACTCGCCTTTGTATTGGATGGAGTCAATTTTGGAGCATCTGATTTTGCTTACAC 1497
Query 1485 TGCATACTCCATGGTGGGAGTGGCGGCCATAAGCATTGCAGCAGTAATATATATGGCAAA 1544
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 TGCATACTCCATGGTGGGAGTGGCGGCCATAAGCATTGGAGCAGTAATATATATGGCAAA 1557
Query 1545 GACCAATGGTTTCATAGGAATATGGATAGCTCTTACAATCTATATGGCTCTCCGGGCTAT 1604
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1558 GACCAATGGTTTCATAGGAATATGGATAGCTCTTACAATCTATATGGGTCTCCGTGCTAT 1617
Query 1605 TACTGGAATTGCCAGGATGGCGACAGGAACTGGACCGTGGAGGTTCTTGCGTGGACGATC 1664
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TACTGGAATTGCCAGGATGGCAACAGGAACTGGACCGTGGAGGTTCTTGCGTGGACGATC 1677
Query 1665 ATCCTCTTCATCTTCCTAGGACTTAGTTTATTTATAACGAGTTGCATCtc-ttcttcctt 1723
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1678 ATCCTCTTCATCTTCCTAGGACTTAGTTTATTTATATCGAGTTGCATCTCCTTCTTCCTT 1737
Query 1724 cttcgtttttgtttatggttcttgtgtttgtttttc-aaca-tttt 1767
|||||||||||||| |||||||||||||| ||||| |||| ||||
Sbjct 1738 CTTCGTTTTTGTTTCTGGTTCTTGTGTTTCTTTTTTTAACAGTTTT 1783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5