BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08490.1
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903706 jgi|Araly1|903706|Al_scaffold_0003_834 928 0.0
Ahg928493 jgi|Araly1|928493|scaffold_300950.1 91.6 1e-17
> Ahg903706 jgi|Araly1|903706|Al_scaffold_0003_834
Length=711
Score = 928 bits (502), Expect = 0.0
Identities = 643/710 (91%), Gaps = 14/710 (2%)
Strand=Plus/Plus
Query 91 ATGGAGAGAAGAGAGGACCACTACTCAAACTACTTCGTCCAAAGTCCTTCAACGGTTTTC 150
|||||||||||||||||||||||||||||||||||||||||||| |||||| || | | |
Sbjct 1 ATGGAGAGAAGAGAGGACCACTACTCAAACTACTTCGTCCAAAGCCCTTCATCGCTATCC 60
Query 151 CATGACCCT-GAATCCGAATTCCAATC-CCCGATTCGATCTGACTCAGCGCCATTGGTCC 208
|| || ||| || | ||||||||| || ||| | ||||||||||||||||||||||||||
Sbjct 61 CACGA-CCTCGAGTTCGAATTCCAGTCTCCC-ACTCGATCTGACTCAGCGCCATTGGTCC 118
Query 209 TATCCAGCGTCAATGAATTCCCGAGGTACTCAGATTTCTTGAGAAACTCCGAAAACAACT 268
||||| ||||||||||||||| | | |||||||||||||||||||||||| |||||| |
Sbjct 119 TATCCCCCGTCAATGAATTCCCCAAGCACTCAGATTTCTTGAGAAACTCCGGAAACAAAT 178
Query 269 TCTTGTATGAGGATGATGAGAAAA-GATTGGTGCCATTG-G--GGACCTCCAATTCGAGT 324
| ||||||||||||||||||||| | |||||||||||| | | | |||||||||| ||
Sbjct 179 TAGTGTATGAGGATGATGAGAAAATG-TTGGTGCCATTGCGTCGTAGCTCCAATTCGGGT 237
Query 325 TGGTGGATCGTCCTCCAAGTAGGTTGGAGGTTTTTGTTTAGCTTAGGAGTGGCATTGCTT 384
||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGGTGGATCGTTCTGCAAATAGGTTGGAGGTTTTTGTTTAGCTTAGGAGTGGCATTGCTT 297
Query 385 GTCTTCTACATTGCTACTCAGCCTCCTCATCCTAACATTT-CTTTTCGAATTGGGAGGTT 443
||||||||||||| | | | ||| || ||| ||| ||||| | ||||| |||||
Sbjct 298 GTCTTCTACATTGGT--TTAACCTTTTCGGCCT--GTTTTCCTTTTGGGATTGGAAGGTT 353
Query 444 TAATCAGTTCATGTTAGAAGAAGGTGTGGATTCACATGGAGTGTCGACTAAGTTCCTCAC 503
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 354 TAATCAGTTTATGTTAGAAGAAGGTGTGGATTCACATGGAGCGTCGACTAGGTTCCTCAC 413
Query 504 TTTCAATTGCTCTACCAAGCTCATAATAGATAACAAGTCTAATGTCTTTGGCCTTCACAT 563
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 414 TTTCAATTGCTCTACCAAGCTCATAGTAGATAACAAGTCTAATGTCTTTGGCCTTCACAT 473
Query 564 TCATCCTCCATCTATCAAATTCTTCTTTGGCCCACTCAACTTTGCAAAGGCGCAAGGACC 623
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 TCATCCTCCATCTATCAAATTCTTCTTTGGCCCCCTCAACTTTGCAAAGGCGCAAGGACC 533
Query 624 TAAACTATATGGGTTGAGCCATGAGTCGACAACATTTCAGCTATACATAGCAACAACGAA 683
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 534 TAAACTATATGCGTTGAGCCATGAGTCGACAACATTTCAGCTCTACATAGGAACAACGAA 593
Query 684 CCGGGCGATGTATGGGGCGGGAACAGAGATGAATGATATGCTTCTGTCGAGAGCTGGATT 743
|||||| ||||||||||| ||| | |||||| |||||||||||| |||||||||||||||
Sbjct 594 CCGGGCAATGTATGGGGCAGGAGCGGAGATGGATGATATGCTTCAGTCGAGAGCTGGATT 653
Query 744 GCCTCTAATACTGCGGACGAGTATAATTTCCGACTATCGAGTTGTCTGGA 793
|||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 654 GCCTCTAATACTGCGGACAAGCATAATTTCCGACTATCGAGTTGTCTGGA 703
> Ahg928493 jgi|Araly1|928493|scaffold_300950.1
Length=342
Score = 91.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 887 AATGTAGATTGGTATCTTGATCAAAGATTATATCCAAAGAGATGCCATA 935
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AATGTAGATTGGTATCTTGATCAAAGATTATATCCAAAGAGATGCCATA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5