BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08500.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478147 jgi|Araly1|478147|fgenesh2_kg.3__848__AT3G08500.1 1932 0.0
Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1 106 5e-22
> Ahg478147 jgi|Araly1|478147|fgenesh2_kg.3__848__AT3G08500.1
Length=1266
Score = 1932 bits (1046), Expect = 0.0
Identities = 1199/1272 (94%), Gaps = 14/1272 (1%)
Strand=Plus/Plus
Query 18 ATCTCTTTCTCTCTTTGTCATATCCATTACGCATATTCGTATCATTCCAAAGCAATCCCC 77
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCTCCCTCTCTTTGTCATACCCATTACGCATATTCGTATCATTCCAAAGCAATCCCC 60
Query 78 ACAAATCATATCATCCTCTC---C-ATCTTTCCTTGCTTCTTACAATCTCTCC-AATT-T 131
|||||||||||||||||||| | |||||||||||||| |||||||||||| |||| |
Sbjct 61 ACAAATCATATCATCCTCTCTATCTTTCTTTCCTTGCTTCATACAATCTCTCCAAATTAT 120
Query 132 CAAATCTGTATACTCTTCTTCAAAAAGGCTCCACCAGTCCAAAATGATGATGAGGAAACC 191
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 -ACATCTGTATACTCTTCTTCAAAAAGGCTCCACCAGTCCAAAATGATGATGAGGAAACC 179
Query 192 GGACATTACTACGATCAGAGACAAAGGCAAGCCAAATCATGCATGTGGTGGTAATAACAA 251
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 GGACATTACTACGATCAGAGACAAGGGCAAGCCAAATCATGCATGTGGTGGTAATAACAA 239
Query 252 CAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGATAAGATA 311
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 240 CAAACCGAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGACGAGAAGCTCATAAGATA 299
Query 312 CATGTTGACTAATGGACAAGGATGTTGGAGTGACATCGCTAGAAATGCTGGTCTTTTACG 371
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 CATGTTGACTAATGGACAAGGATGTTGGAGTGACATTGCTAGAAATGCTGGTCTTTTACG 359
Query 372 TTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGTGG 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TTGTGGTAAAAGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAACGCGG 419
Query 432 ATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCATTCCATTCTTGGTAACAG 491
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CTCCTTCTCTCCTCAAGAAGAGGATCTCATCTTCCATTTGCATTCTATTCTTGGTAACAG 479
Query 492 GTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGAACAGACAACGAGATCAAAAACTTTTG 551
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 GTGGTCTCAAATAGCTACTCGGCTTCCAGGTAGGACAGACAACGAGATCAAAAACTTTTG 539
Query 552 GAACTCGACATTGAAGAAGCGGCTTAAGAACAACAGCAACAACAATACTTCATCAGGATC 611
||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||||||||
Sbjct 540 GAACTCGACATTGAAGAAGAGGCTTAAGAATAACAACAACAACAATAATTCATCAGGATC 599
Query 612 ATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCACCTAACAATAGTAATAGTAATTCCTTGGACCCAAGAGATCAACATGTGGATATGGG 659
Query 672 AGGCAACTCAACTTCATTGATGGATGACTATCATCATGATGAAAACATGATGACAGTGGG 731
||||||||| || |||||||||||| |||||| |||||||| |||||||||| ||||||
Sbjct 660 AGGCAACTCTGCTCCATTGATGGATGGCTATCACCATGATGACAACATGATGATAGTGGG 719
Query 732 GAACACCATGCGCATGGACTCTTCCTCCCCATTCAATGTTGGACCAATGGTTAATAGTGT 791
||| || ||||||||||| ||||| ||| |||||||| ||| |||| |||||||||||||
Sbjct 720 GAATACAATGCGCATGGAATCTTCTTCCTCATTCAATTTTGCACCAGTGGTTAATAGTGT 779
Query 792 GGGCTTAAACCAACTTTATGATCCCTTGATGATATCAGTGCCGGATAACGGATATCACCA 851
|||||||||||| ||| |||||||| ||||||||||||| || |||||| |||||||||
Sbjct 780 GGGCTTAAACCAGCTTGATGATCCCCTGATGATATCAGTACCAGATAACCAATATCACCA 839
Query 852 AATGGGAAACACAGTGAATGTGTTCAGCGTTAATGGTTTAGGAGATTATGGAAACACAAT 911
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 840 AATGGGAAACACAGGGAATGTGTTCAACGTTAATGGCTTAGGAGATTATGGAAACACAAT 899
Query 912 TCTTGATCCAATTAGCAAGAGAGTATCAGTAGAAGGTGATGATTGG-TTCATTCCCCCCT 970
|||||||||| ||||||||||||||||||||||| | | ||||||| ||| |||||||||
Sbjct 900 TCTTGATCCATTTAGCAAGAGAGTATCAGTAGAA-G-G-TGATTGGTTTC-TTCCCCCCT 955
Query 971 CGGAGAATACCAACGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAGGCCCTT- 1029
||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 956 CGGAGAATACCAATGTCATTGCTTGTAGTACAAGCAACAACCTAAACTTACAAG-TCTTC 1014
Query 1030 GATCCTTGCTTCAATAGCAAAAATCTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTG 1089
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 GATCCTTGCTTCAATAGCAAAAATGTTTGTCATTCAGAAAGCTTCAAGGTAGGGAATGTG 1074
Query 1090 TTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTGGGGATAGAGAATGGTTCTTGGGAAATAGAAAACCCTAAAATCGGAGATTGGGATTTG 1134
Query 1150 GATGGTCTCATCGATAACAACTCTTCTTTTCCCTTCCTTGATTTCCAAGTCGATTGACAa 1209
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1135 GATGGTCTCATCGATAACAACTCTTCTTTCCCCTTCCTTGATTTCCAAGTCGATTGACAA 1194
Query 1210 tttctctcttttcatttcattctatcttcttttactcattccttcttattcattcttata 1269
||||||||| | | |||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1195 TTTCTCTCTCTCCCTTTCATTCCATCTTCTTTTATTCATTCCTCCTTATTCATTCTTATA 1254
Query 1270 cacatatttttt 1281
|||| ||||||
Sbjct 1255 TACATTTTTTTT 1266
> Ahg489496 jgi|Araly1|489496|fgenesh2_kg.6__2630__AT5G26660.1
Length=1352
Score = 106 bits (57), Expect = 5e-22
Identities = 234/315 (74%), Gaps = 30/315 (10%)
Strand=Plus/Plus
Query 258 GAAGCTAAGAAAAGGACTTTGGTCGCCTGATGAAGATGAGAAGCTGAT-AA-GATA-CAT 314
||||||| ||||||| |||||||| || || ||||||||||| || | || ||| ||
Sbjct 152 GAAGCTACGAAAAGGCCTTTGGTCTCCCGAGGAAGATGAGAAACTTCTCAATTATATCA- 210
Query 315 GTTGACTAATGGACAAGGATGTTGGAGTGAC-ATCGCTAGAAAT-GCTGGTCTT-TTACG 371
| ||| |||| || || ||||||||| | || ||| || | || ||| || | |
Sbjct 211 CTAGAC--ATGGTCATGGCTGTTGGAGT-TCTGTCCCTA-AACTCGCAGGT-TTGCAAAG 265
Query 372 TTGTGGTAAA-AGTTGTCGCCTTCGCTGGATCAATTACTTGAGGCCTGATCTTAAA-CGT 429
||||| ||| |||||| | ||| | ||||| ||||| ||||| || ||| ||||| |
Sbjct 266 ATGTGG-AAAGAGTTGTAGACTTAGATGGATAAATTATTTGAGACCAGAT-TTAAAGAGA 323
Query 430 GGATCCTTCTCTCCTCAGGAGGAGGATCTCATCTTCCATTTGCA-TTCCAT--T-C-TT- 483
||| ||| ||| | || || || || | | | || ||| | ||||| | | ||
Sbjct 324 GGA-GCTT-TCT-CGCAAGACGAAGAAAGCTTAAT-CA-TTG-AGCTCCATGCTGCATTA 377
Query 484 GGTAACAGGTGGTCTCAAATAGCTACTCGGCTT-CCAGGTAGAACAGACAACGAGATCAA 542
|| ||||||||||||||||| || || ||| || || || ||||||||||||||||||||
Sbjct 378 GGCAACAGGTGGTCTCAAATCGCAACGCGG-TTACCGGGAAGAACAGACAACGAGATCAA 436
Query 543 AAACTTTTGGAACTC 557
|||||||||||||||
Sbjct 437 AAACTTTTGGAACTC 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5