BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08505.2
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478149 jgi|Araly1|478149|fgenesh2_kg.3__850__AT3G08505.2 1932 0.0
> Ahg478149 jgi|Araly1|478149|fgenesh2_kg.3__850__AT3G08505.2
Length=1345
Score = 1932 bits (1046), Expect = 0.0
Identities = 1236/1325 (93%), Gaps = 24/1325 (2%)
Strand=Plus/Plus
Query 58 ttttttCTTCTCTCCGCACAAATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTG 117
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 38 TTTTTT-TTCTCTCCGCAC-AATCCCCAAATGTCCGATAGGATACTGTGCAAGTTCTTTG 95
Query 118 TCCATGGCTCGTGCTTGAAAGGCGAAAATTGCGAATTTTCCCATGACTCTAAGGATCCGC 177
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 96 TCCATGGCTCGTGCTTGAAAGGAGAAAATTGTGAATTTTCCCATGATTCTAAGGATCCGC 155
Query 178 CCAATAATGTTTGCACATTCTATCAGAAACGAATATGTTTGTACGGAAGTAGATGTAGAT 237
|||||||||||||||||||||| || ||| |||||||||| ||||||||||||||| |||
Sbjct 156 CCAATAATGTTTGCACATTCTACCAAAAAGGAATATGTTTCTACGGAAGTAGATGTCGAT 215
Query 238 ACGATCATGTCAGAGCTGCTTCCAATCTTCCTCTTAGCTCAGATTCTGAGTCTTTAGATC 297
| |||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||
Sbjct 216 ATGATCATGTCAGAGCTGCTTCCAATGTTCCTCTTAGCTTAGATTCTGAGTCTCTGGATC 275
Query 298 GCTCTATATCCACCACCCCCTCTAGGCATTTGCAACAACAAGGCGATAATA-ATGACGGT 356
|||||||||||||||| ||||||||| || ||||||||||| | | || | ||||||
Sbjct 276 GCTCTATATCCACCACTCCCTCTAGGAATCTGCAACAACAA-G-G--AACACCCGACGGT 331
Query 357 GACAAATC-CTCTAACGTTTACTGTATCCACCCTAGAGAGTACCCGATCTGCTCTTTTGC 415
|| ||||| | ||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 332 GATAAATCGC-CTAACGTCTATTGTATCCACCCAAGAGAGTACCCGATCTGCTCTTTTGC 390
Query 416 TGCAGCTGGTGATTGCCCTCGAGGTAACCAGTGTCCACATATGCATGGTGACCTCTGCAA 475
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 391 TGCAGCTGGTGATTGCCCGCGAGGAAACCAGTGTCCTCATATGCATGGAGACCTCTGCAA 450
Query 476 TACTTGTGGCAAGAAGTGTTTGCATCCTTTTAGACCCGAGGAACGAGAAGAGCATACGAA 535
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct 451 TACTTGTGGCAAGAAGTGTTTGCATCCTTTCAGACCCGAAGAACGAGAAGAGCACACTAA 510
Query 536 AGAATGTGAGAAGAAGCAGAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATTGAGTG 595
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 511 AGAATGTGAGAAGAAGCAAAAGCACATTGAGGCTTTGAAACAAAGTCAAGATATCGAGTG 570
Query 596 TAGTGTGTGTTTGGATCGTATCTTGTCAAAGGCTACTCCAGGGGAAAGGAAGTTTGGGCT 655
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 571 TAGCGTGTGTTTGGATCGTATCTTGTCAAAGGCAACTCCAGGGGAAAGGAAGTTTGGGCT 630
Query 656 GTTGACTGAGTGTGATCATCCGTTTTGTATACAATGTATTCGTAATTGGCGTAGCAGTGC 715
|||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 631 GTTGACCGAGTGCGATCATCCGTTTTGTATACAATGCATTCGTAATTGGCGCAGCAGTGC 690
Query 716 TCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCTTGTCCTATATGTCGCAAACT 775
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 691 TCCTGTTTCGGGAATGGATGTCAACAGTACGTTGAGAGCCTGTCCTATATGTCGCAAACT 750
Query 776 CTCTTATTTTGTTGTCCCTAGTGTGGTCTGGTACTCTTCTCCTGAGGAGAAGAAGGAAAT 835
|||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||
Sbjct 751 CTCTTATTTTGTTGTCCCCAGTGTTGTCTGGTACTCTACTCCTGAAGAGAAAAAGGAAAT 810
Query 836 TATCGACATATACAAGGCTAAACTCAGATCAATCGACTGTAAGCACTTCAACTTTGGAAA 895
|||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 811 TATCGACATATATAAGGCAAAACTCAGATCTATTGACTGTAAGCACTTCAACTTTGGAAA 870
Query 896 TGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TGGAAACTGCCCATTTGGAGCAAGTTGTTTCTATAAGCATGCATATTCTGATGGTCACTT 930
Query 956 GGAAGAGGTTGTTTTACGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACAGACAG 1015
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 931 GGAAGAAGTTGTTTTGCGGCATCTTGGTTCTCAAGAAGGAGAAACTGTAATAACTGGCAG 990
Query 1016 TATCAGGCTATCAGAGTTCCTTGGTGGCCTGCAGATTTTCTAAAATATTTTTTCCCAGA- 1074
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |
Sbjct 991 TATCAGGCTATCAGAGTTGCTTGGAGGCCTGCAGATTTTCTAAAATATTCTTTCCCATAA 1050
Query 1075 TAAATCGAATAACACAAGGTGGTGATGACAACTTAATATTCTTATCAAACTCATTTTGAT 1134
||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1051 TAA-TCAAATAACACAAGGTGGTGATGACAACTTATT-TTCTTATCAAACTCATTTTGAT 1108
Query 1135 TCTGAGTTTTGACAATCCTCTTAAATAAGAAATGTAGACATGCTCAGAGAGGATAATAGT 1194
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1109 TCTGAGTTTTGACAATCCTCTTAAATAAGAAATGAAGACATGCTCAGAGAGGATAATAGT 1168
Query 1195 TAAAAAGAGATAAGGACACAGGAGAAACTCAATGTAATAATATTT-AGATAGGGAATGTT 1253
|||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1169 TAAAAAGATATCAGGACACAGGAGAAACTCAATGTAATAATATTTTAGCTAGGGAATGT- 1227
Query 1254 ACTCTACTACACAATAATGTaaaaaaaaaTGTGTGTGAATATACC-AACAAA-TAATGTA 1311
|| |||||||||||||||||| |||| |||||| |||||||| |||||| |||||||
Sbjct 1228 -CT--ACTACACAATAATGTAAACAAAA-TGTGTG--AATATACCCAACAAAATAATGTA 1281
Query 1312 AATAATGCTTT-CATAGCACTCCGTCTGTAAGATATTTTAGATAAATAAAATTTGAGTTT 1370
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1282 AATAATGCTTTTCATAGCACTCCATCTGTAAGATATTTTAGATAA-TAAAATTTGAGTTT 1340
Query 1371 CTATT 1375
|||||
Sbjct 1341 CTATT 1345
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 TACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTT 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 1 TACAAATTCAATTTCTTCACATAAAGCTCTCTCTTCCTT 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5