BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08510.1
Length=2305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903709 jgi|Araly1|903709|Al_scaffold_0003_837 1469 0.0
Ahg486035 jgi|Araly1|486035|fgenesh2_kg.5__2027__AT3G55940.1 1452 0.0
> Ahg903709 jgi|Araly1|903709|Al_scaffold_0003_837
Length=1695
Score = 1469 bits (795), Expect = 0.0
Identities = 845/870 (97%), Gaps = 0/870 (0%)
Strand=Plus/Plus
Query 296 ATGTCGAAGCAAACGTACAAAGTGTGTTTCTGCTTTCGCCGGAGGTTTCGTTACACTGCA 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGAAGCAAACGTACAAAGTGTGTTTCTGCTTTCGCCGGAGGTTTCGCTACACTGCA 60
Query 356 TCGGAGGCACCGCGTGAGATCAAGACCATTTTCGAAAAGTACTCAGAGAATGGAGTTATG 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGAGGCACCGCGTGATATCAAGACCATTTTCGAAAAGTACTCAGAGAATGGAGTTATG 120
Query 416 ACCGTTGATCATCTCCACAGGTTTCTGATCGATGTTCAGAAACAAGATAAAGCCACCAGA 475
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ACCGTTGATCATCTCCACAGGTTTCTGATCGATGTTCAGAAGCAAGATAAAGCCACCAGA 180
Query 476 GAAGATGCACAGTCAATTATCAATTCTGCATCTTCTCTTCTTCATCGTAATGGTCTCCAT 535
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GAAGATGCACAGTCAATTATCAATTCTGCATCTTCTCTTCTTCATCGGAATGGTCTCCAA 240
Query 536 CTTGATGCTTTCTTCAAGTACCTCTTTGGTGATAATAACCCTCCTCTTGCTCTCCATAAG 595
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 241 CTTGATGCTTTCTTCAAGTACCTTTTTGGTGATAATAACCCTCCTCTTGCTCTACATGAG 300
Query 596 GTGCATCATGACATGGATGCTCCTATATCGCATTATTTCATATTCACTGGTCATAATTCT 655
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GTGCATCATGACATGGATGCTCCTATATCGCATTATTTCATATTCACTGGCCATAATTCT 360
Query 656 TATCTGACTGGTAATCAGCTGAGCAGTGACTGTAGTGAGGTACCTATTATTGATGCGTTG 715
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TATCTCACTGGTAATCAGCTGAGCAGTGACTGTAGTGAGGTACCTATTATAGATGCGTTG 420
Query 716 AAGAAAGGTGTTAGAGTCATTGAATTGGATATATGGCCCAATTCCAACAAAGACGATATT 775
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 AAGAAAGGTGTTAGAGTGATTGAATTGGATATATGGCCGAATTCCAACAAAGACGATATT 480
Query 776 GATGTTCTTCACGGAATGACTCTCACTACACCTGTGGGGTTGATCAAATGTCTCAAAGCT 835
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GATGTTCTTCACGGAATGACTCTCACTACACCGGTGGGGTTGATCAAATGTCTCAAAGCT 540
Query 836 ATCAGAGCACATGCCTTTGATGTATCTGACTATCCTGTTGTTGTAACTCTTGAAGATCAT 895
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 541 ATCAGAGCACATGCCTTTGATGTATCCGACTATCCTGTTGTTGTCACTCTTGAAGATCAT 600
Query 896 CTTACTCCAGATCTTCAGTCTAAAGTTGCTGAGATGGTTACTGAGATATTTGGGGAAATT 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 CTTACTCCAGATCTTCAGTCTAAAGTTGCTGAGATGGTTACCGAGATATTTGGGGAAATT 660
Query 956 CTGTTTACTCCTCCTGTGGGAGAATCTTTGAAGGAGTTCCCATCGCCAAACTCTTTAAAA 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 CTGTTTACTCCTCCTGTGGGAGAATCTTTGAAGGAGTTCCCATCACCAAACTCTTTAAAA 720
Query 1016 AGACGTATTATCATCTCAACCAAACCCCCAAAAGAGTACAAGGAAGGAAAAGATGTGGAA 1075
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 AGGCGTATTGTCATCTCAACCAAACCCCCAAAAGAGTACAAGGAAGGAAAAGATGAGGAA 780
Query 1076 GTGGTGCAGAAAGGTAAAGACTTGGGGGATGAAGAAGTTTGGGGAAGAGAAGTTCCGAGC 1135
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GTGGTGCAGAAAGGTAAAGCCTTGGGTGATGAAGAAGTTTGGGGAAGAGAAGTTCCGAGC 840
Query 1136 TTTATTCAGAGGAACAAAAGTGAAGCTAAG 1165
|||||||| ||||||||||||||||| |||
Sbjct 841 TTTATTCAAAGGAACAAAAGTGAAGCCAAG 870
Score = 1376 bits (745), Expect = 0.0
Identities = 805/835 (96%), Gaps = 0/835 (0%)
Strand=Plus/Plus
Query 1207 tgaAGACAAGTCTAAGATTAATGCACCACCCCAGTATAAACATTTGATTGCAATCCATGC 1266
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TGAAGCCAAGTCTAAGAATAATGCACCACCCCAGTATAAACATTTGATTGCAATCCATGC 920
Query 1267 TGGGAAACCAAAAGGCGGAATTACTGAGTGTTTAAAGGTAGATCCTGACAAGGTTAGACG 1326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 921 TGGGAAACCAAAAGGCGGAATTACTGAGTGTTTAAAGGTAGATCCTGGCAAGGTTAGACG 980
Query 1327 CCTTAGCTTAAGCGAAGAACAACTTGAAAAGGCAGCAGAAAAATATGCGAAGCAGATTGT 1386
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 981 CCTTAGCTTGAGCGAAGAACAGCTTGAAAAGGCAGCAGAAAAATATGCAAAGCAGATTGT 1040
Query 1387 GAGGTTTACTCAGCACAATTTGCTGAGGATATACCCAAAAGGAACTAGAGTCACATCATC 1446
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1041 GAGGTTTACTCAGCACAATTTGCTGAGGATTTACCCAAAAGGAACTAGAGTTACTTCATC 1100
Query 1447 AAATTACAACCCGTTGGTTGGCTGGAGCCACGGTGCTCAAATGGTGGCTTTCAATATGCA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAATTACAACCCGTTGGTTGGCTGGAGCCACGGTGCTCAAATGGTGGCTTTCAATATGCA 1160
Query 1507 GGGGTATGGAAGATCATTGTGGCTAATGCAGGGAATGTTTAGAGCCAATGGCGGATGTGG 1566
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 GGGGTATGGAAGATCATTATGGCTAATGCAAGGAATGTTTAGAGCCAATGGCGGATGTGG 1220
Query 1567 CTACATCAAGAAACCTGACCTTCTGCTGAAAAGTGGTTCGGATAGTGACATATTTGACCC 1626
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1221 CTACATCAAGAAACCTGATATTCTGCTGAAAAGTGGTTCGGATAGTGACATCTTTGACCC 1280
Query 1627 AAAAGCTACTCTACCTGTGAAAACAACACTTAGGGTAACTGTATACATGGGAGAAGGCTG 1686
||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1281 AAAAGTTACTCTACCTGTAAAAACAACACTTAGGGTAACTATATACATGGGAGAAGGCTG 1340
Query 1687 GTACTTTGATTTCCGCCACACACACTTTGACCAATATTCACCGCCTGACTTCTATACAAG 1746
||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 1341 GTACTTTGATTTCCGCCACACCCACTTCGATCAGTATTCACCGCCTGACTTCTATACAAG 1400
Query 1747 GGTTGGGATAGCTGGAGTTCCAGGGGATACAGTAATGAAGAAGACGAAAACACTGGAGGA 1806
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1401 GGTTGGGATAGCTGGAGTTCCAGGGGATACAATAATGAAGAAGACGAAAACACTGGAGGA 1460
Query 1807 TAATTGGATACCAGCTTGGGATGAGGTGTTTGAGTTCCCATTAACCGTTCCAGAGCTGGC 1866
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1461 TAATTGGATACCAGCTTGGGATGAGGTGTTTGAGTTCCCGTTAACTGTTCCAGAGCTGGC 1520
Query 1867 CCTGCTACGATTAGAAGTGCATGAGTATGACATGTCAGAGAAAGATGATTTTGGAGGACA 1926
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 TCTACTGCGATTAGAAGTGCATGAGTATGACATGTCAGAGAAAGATGATTTTGGAGGACA 1580
Query 1927 GACATGCTTACCGGTTTGGGAGCTAAGCGAAGGAATAAGAGCATTTCCTTTACATAGCCG 1986
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GACATGCTTGCCGGTTTGGGAGCTAAGCGAAGGAATAAGAGCATTTCCTTTACATAGCCG 1640
Query 1987 GAAAGGAGAGAAGTACAAATCCGTTAAGCTTCTCGTGAAGGTGGAGTTTGTGTGA 2041
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1641 GAAAGGGGAGAAGTACAAATCCGTGAAGCTTCTCGTGAAGGTGGAGTTTGTGTGA 1695
> Ahg486035 jgi|Araly1|486035|fgenesh2_kg.5__2027__AT3G55940.1
Length=1758
Score = 1452 bits (786), Expect = 0.0
Identities = 1477/1799 (82%), Gaps = 94/1799 (5%)
Strand=Plus/Plus
Query 296 ATGTCGAAGCAAACGTACAAAGTGTGTTTCTGCTTT-CGCCGGAGGTTTCGTTACACTGC 354
|||||||||||||| |||||||| |||||||| ||| || ||||||| ||| ||||||
Sbjct 1 ATGTCGAAGCAAACATACAAAGTCTGTTTCTG-TTTCCGTCGGAGGTATCGACACACTGT 59
Query 355 ATCGGAGGCACCGCGTGAGATCAAGACCA-TTTTCGA-AAAGTACTCAGAGAATGGAGTT 412
|| | || |||| ||||||||||| || ||||||| ||| || || || || || |
Sbjct 60 GTCCGTTGCTCCGCCTGAGATCAAGA-CACTTTTCGACAAA-TATTCCGACAAAGGTCTC 117
Query 413 ATGACCGTTGATCAT-CTCCACAGGTTTCTGATCGATGTTCAGAAACAAGATAAAGCCAC 471
||||| |||| | |||| ||| || || |||||||||||||||||||| ||||||||
Sbjct 118 ATGACAACCGATC-TCCTCCTCAGATTCCTAATCGATGTTCAGAAACAAGACAAAGCCAC 176
Query 472 CAGAGAAGATGCAC-AGTCAATTATCAATTCTGCATCTTCTCTTCTTCATCGTAATGGTC 530
| |||||| || | || ||| ||||| || |||||||||||||||||||||||||||
Sbjct 177 GAAAGAAGAAGCTCAAG-AAATCGTCAATGCTTCATCTTCTCTTCTTCATCGTAATGGTC 235
Query 531 TCCATCTTGATGCTTTCTTCAAGTACCTCTTTGG-TGATAATAACCCTCCTCTTGCT-CT 588
|||| ||||||||||||||||| ||||| ||| | || || ||| |||||||| || ||
Sbjct 236 TCCACCTTGATGCTTTCTTCAAATACCT-TTTCGCTGTTACCAACTCTCCTCTTTCTTCT 294
Query 589 CCATAAGGTGCATCATGACATGGATGCTCCTAT-ATCGCATTATTTCATATTCACTGGTC 647
| | |||||||||| || ||||||||||| || ||| |||||||||||||| || || |
Sbjct 295 C-AGGAGGTGCATCAAGATATGGATGCTCC-ATTATCACATTATTTCATATTTACAGGAC 352
Query 648 ATAATTCTTATCTGACTGGTAATCAGCTGAGCAGTGACTGTAGTGAGGTACCTATTATTG 707
||||||| ||| | ||||||||||| ||||| ||||| || ||||| | ||||| ||||
Sbjct 353 ATAATTCGTATTTAACTGGTAATCAACTGAGTAGTGATTGCAGTGAATTGCCTATCATTG 412
Query 708 ATGCGTTGAAGAAAGGTGTTAGAGTCATTGAATTGGATATATGGCCCAATTCCAACAAAG 767
| || ||||| |||||||||||||| ||||| || ||||| ||||| || || | |||
Sbjct 413 AAGCATTGAAAAAAGGTGTTAGAGTTATTGAGTTAGATATTTGGCCAAACTCTGATGAAG 472
Query 768 ACGATATTGATGTTCTTCACGGAATGACTCTCAC-TACACCTGTGGGGTTGATCAAATGT 826
| | ||| ||||||||||| |||| |||||| || | ||||||||| | |||||||||||
Sbjct 473 ATGGTATCGATGTTCTTCATGGAAGGACTCTTACAT-CACCTGTGGAGCTGATCAAATGT 531
Query 827 CTCAA-AGCTATCAGAGCACATGCCTTTGATGTATCTGACTATCCTGTTGTTGTAACTCT 885
|| || |||||| |||| |||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 532 CT-AAGAGCTATTAGAGAACATGCTTTTGATGTATCTGATTATCCAGTTGTTGTTACTCT 590
Query 886 TGAAGATCATCTTACTCCAGATCTTCA-GTCTAAAGTTGCTGAGATGGTTACTGAGATAT 944
||||||||||||||||||| | || || | |||||||||||||||||||||| || ||||
Sbjct 591 TGAAGATCATCTTACTCCAAAACTCCAAG-CTAAAGTTGCTGAGATGGTTACAGATATAT 649
Query 945 TTGGGGAAAT-TCTGTTTACTCCTCCTGT--GGGAGAATCTTTGAAGGAGTTCCCATCGC 1001
|||| ||||| | ||| |||||||||| | ||| |||| |||||||||||| |||||||
Sbjct 650 TTGGAGAAATGT-TGTATACTCCTCCT-TCAGGG-GAATGTTTGAAGGAGTTTCCATCGC 706
Query 1002 CAAAC-TCTTT-AAAAAGACGTATTATCATCTCAACCAAACCCCCAAAAGAGTACAAGGA 1059
| | | ||| ||||| |||||||| |||||||| ||||| || |||||||| ||||
Sbjct 707 CCG-CGTTTTTGAAAAAT-CGTATTATGATCTCAACTAAACCTCCTAAAGAGTATAAGGC 764
Query 1060 AGGAAAAGATG-TGGAAGTGGTGCAGAAAGGTAAAGACTTGGGG-GATGAAGAAGTTTGG 1117
|| || ||||| || | ||||| | ||||||| || || ||| |||||||||||||||
Sbjct 765 AGCAACAGATGATG-ATTTGGTGAAAAAAGGTAG-GAATTTGGGTGATGAAGAAGTTTGG 822
Query 1118 GGAAGAGAAGTTCCGAGCTTTATTCAGA-GGAACAAAAGTGAAG-CTAAGGATGACTT-A 1174
|||||||||||||| |||||||||| || || ||| ||||| | | ||| |||| || |
Sbjct 823 GGAAGAGAAGTTCCAAGCTTTATTC-GAAGGGACAGAAGTGTTGAC-AAGAATGA-TTCA 879
Query 1175 GATGGAAatgatgatgatgacgatgatgatgatga--A-GAC-A--A-G-TC-TAA-GAT 1224
||||| ||||||| |||||||||||||||||||| | || | | | | | | |||
Sbjct 880 AATGGAGATGATGACGATGACGATGATGATGATGATGATGATGATGATGATGGTGATGAT 939
Query 1225 ----T-AA------TGCACCACCCCAGTATAAACATTTGATTGCAATCCATGCTGGGAAA 1273
| || ||||||||| | ||||| ||||||||||||||| | || ||||||
Sbjct 940 AAAATTAAGAAGAATGCACCACCGGAATATAAGCATTTGATTGCAATCGAAGCCGGGAAA 999
Query 1274 CCAAAAGGCGGAATTACTGAGTGTTTAAAGGTAGATCCTGACAAGGTTAGACGCCTTAGC 1333
|| |||||||| || ||||| ||||| ||||| |||||||| || || ||||| ||||||
Sbjct 1000 CCGAAAGGCGGGATAACTGAATGTTTGAAGGTGGATCCTGATAAAGTAAGACGGCTTAGC 1059
Query 1334 TTAAGCGAAGAACAACTTGAAAAGGCAGCAGAAAAATATGCGAAGCAGATTGTGAGGTTT 1393
|| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1060 TTGAGTGAAGAACAACTTGAAAAGGCCTCAGAAAAATATGCGAAACAGATTGTGAGGTTT 1119
Query 1394 ACTCAGCAC-AATTTGCTGAGGATATACCCAAAAGGAACTAGAGTCACATCATCAAATTA 1452
|||||| | || ||||| || | ||||| |||||||||||| | || |||||||| ||
Sbjct 1120 ACTCAG-AGGAACTTGCTTCGGGTTTACCCGAAAGGAACTAGAATTACTTCATCAAACTA 1178
Query 1453 CAACCCGT-TGGTTGGCT-GGAGCCACGGTGCTCAAATGGTGGCTTTCAATATGCAGGGG 1510
||||| | || ||| || ||||||| || |||||||||||||||||||||||||||||
Sbjct 1179 TAACCC-TCTGATTG-CTTGGAGCCATGGAGCTCAAATGGTGGCTTTCAATATGCAGGGA 1236
Query 1511 -TATGGAAGATCATTGTGGCTAATGCAGGGAATGTTTAGAGCCAATGGCGGATGTGGCTA 1569
| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1237 CT-TGGAAGATCATTGTGGGTAATGCAAGGAATGTTTAGAGCCAATGGAGGATGTGGCTA 1295
Query 1570 CATCAAGAAACCTGACCTTCTGCTGAAAAGTGGTTCGGATAG-TGACATATTTGACCCAA 1628
||||||||||||||| ||| |||| |||| | || || | || |||||||||||
Sbjct 1296 CATCAAGAAACCTGATCTTTTGCT-AAAA-TC---CG-AT-GCTG---TATTTGACCCAG 1345
Query 1629 AAGCTAC-TCTACCTGTGAAAACAACACTTAGGGTAACTGTATACATGGGAGAAGGCTGG 1687
||||||| | ||||||| ||||||||||| ||||||||| |||||||||||||||| |||
Sbjct 1346 AAGCTACAT-TACCTGTAAAAACAACACTAAGGGTAACTATATACATGGGAGAAGGATGG 1404
Query 1688 TACTTTGATTTCC-GCCACACACACTTTGACCAATATTCACCGCCTGACTTCTATACAAG 1746
|||| ||||||| || ||||||||||||| | |||||| || ||||| |||||||||||
Sbjct 1405 TACTACGATTTCCCGC-ACACACACTTTGATCGATATTCTCCACCTGATTTCTATACAAG 1463
Query 1747 GGTTGGGATAGCTGGAGTTCCAGGGGATACAGTAATGAAGAAGACGAAAACACTGGAGGA 1806
||| ||||| ||||||||||| | ||||||| ||||||||||||||||| || | |||||
Sbjct 1464 GGTCGGGATCGCTGGAGTTCCCGCGGATACAATAATGAAGAAGACGAAATCATTAGAGGA 1523
Query 1807 TAATTGGATACCAGCTTGGGATGAGGTGTTTGAGTTCCCATTAACCGTTCCAGAGCTGGC 1866
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1524 TAATTGGATACCAGCTTGGGACGAGGTTTTTGAGTTCCCATTAACAGTTCCAGAGCTTGC 1583
Query 1867 CCTGCTACG-ATTAGAAGTGCATGAGTATGACATGTCAGAGAAAGATGATTTTGGAGGAC 1925
|| ||||| ||| || || ||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1584 TCTTCTACGTATT-GAGGTACATGAATATGACATGTCGGAGAAAGATGATTTTGGAGGCC 1642
Query 1926 AGACATGCTTACCGGTTTGGGAGCTAAG-CGAAGGAATAAGAGCATTTCCTTTACATAGC 1984
| || ||||| ||||||||||||||||| | |||||||| | || ||||| | | || |
Sbjct 1643 AAACTTGCTTGCCGGTTTGGGAGCTAAGGC-AAGGAATACGTGCCGTTCCTCTGCGTAAC 1701
Query 1985 C-GGAAAGGAGAGAAGTACAAATCCGTTAAGCTTCTCGTGAAGGT-GGAGTTTGTGTGA 2041
| ||| || | ||||| | |||||| |||||||| || ||| |||||||||||||
Sbjct 1702 CAGGAT-GGTGTGAAGTGTAGATCCGTGAAGCTTCTTTTGC-GGTTGGAGTTTGTGTGA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86807668355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5