BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08550.1
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478153 jgi|Araly1|478153|fgenesh2_kg.3__854__AT3G08550.1 3160 0.0
> Ahg478153 jgi|Araly1|478153|fgenesh2_kg.3__854__AT3G08550.1
Length=1984
Score = 3160 bits (1711), Expect = 0.0
Identities = 1912/2006 (95%), Gaps = 25/2006 (1%)
Strand=Plus/Plus
Query 1 CACGAAAATAAAATAAAAAGAAAGATCTCAGAATCGCGtctttcttcttcttcttcgtct 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 CACAAAAATAAAATAAAAAGAAAGATCTCAGAATCGCGTCTTTCTTCTTCTTC-T--TC- 56
Query 61 tcttcCTCCGAAACttttttttgtttttCAAAGTGGTGGAGCTAACCATGAAATCGACTC 120
| || | | |||| ||||||||| | |||||||||||||||||||||||||
Sbjct 57 T-TT--T--G--------TTTT-TTTTTCAAATTCGTGGAGCTAACCATGAAATCGACTC 102
Query 121 ACCATCACAGAGCTCCACTAATATCTGCTTCTTCCTCATCTTCATCTTCTTCCCAAAACC 180
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 103 ACCATCACAGAGCTCCACTGATTTCTGCTTCTTCCTCATCTTCATCCTCTTCCCAAAACC 162
Query 181 ATTCATTCGTCTCTAGGCTCCTCCTTCTCCTTACTCTACTTCCAGTTTCCCTTGCTTGTC 240
|||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 163 ATTCTTTTGTCTCTAGGCTCCTCCTTCTCCTTACTTTACTTCCAGTTTCCCTTGCTTGTC 222
Query 241 TCGCCTTTATCCTCCAATGGCGAGGCGGTGGTCTCGCCGATCCTGCCTCTGCTTCTGTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCGCCTTTATCCTCCAATGGCGAGGCGGTGGTCTCGCCGATCCTGCCTCTGCTTCTGTTC 282
Query 301 GTTCCTCTACGTCGGTTCCTGGCGGCTCCGATCTCAATCACGAGGTCTTTCCCGGCATGG 360
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 283 GTTCATCTACGTCGGTTCCTGGCGGCTCCGATCTCAATCACGAGGTGTTTCCCGGCATGG 342
Query 361 AGACTGTTTCATCTGTCTCCCCAAAGTCTCACCAATCCTCCTCCGACTGCTCAAATCTAG 420
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 343 AGACTGTTTCTTCTGTCTCCCCAAAGTCTCACCAATCGTCCTCCGACTGCTCAAATCTAG 402
Query 421 CTCGCAGCTCTTCTCCTTCTTTTCCTTACTATGCTGATTGGAAGTTTGGTGTTGATACTA 480
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 403 CTCGCAGCTCTTCTCCTTCCTTTCCTTACTATGGTGATTGGAAGTTTGGTGTTGATACTA 462
Query 481 GCTTAAAGCCTAAGATATGTATCACGACTAGCACATCAGCTGGATTGGATCAGATTCTAC 540
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 463 GTTTAAAGCCTAAGATATGTATTACGACTAGCACGTCAGCTGGATTGGATCAGATTCTAC 522
Query 541 CATGGATGTTCTACCATAAGGTTCTAGGCGTCTCAACATTCTTCCTTTTCGTTGAAGGGA 600
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 523 CATGGATGTTCTACCATAAGGTTCTAGGAGTCTCTACATTCTTCCTTTTCGTAGAAGGGA 582
Query 601 AAGCTGCTACTCCGAGTATTTCTAAAGTGCTCGAGTCTATTCCTGGTGTTAAAGTAATAT 660
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 583 AAGCTGCTACTCCGAGTATTTCTAAAGTGCTGGAGTCTATTCCTGGGGTTAAAGTAATAT 642
Query 661 ACAGGACGAAAGAGCTTGAGGAGAAGCAAGCGAAGAGCCGGATTTGGAATGAGACCTGGC 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 643 ACAGGACGAAAGAGCTTGAGGAGAAGCAAGCAAAGAGCCGGATTTGGAATGAGACTTGGC 702
Query 721 TTTCGTCTTTCTTTTATAAGCCCTGCAATTATGAGTTATTTGTCAAACAATCTCTCAACA 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TATCGTCTTTCTTTTATAAGCCCTGCAATTATGAGTTATTTGTCAAACAATCTCTCAACA 762
Query 781 TGGAAATGGCTATTGTCATGGCTAGGGATGCGGGCATGGATTGGATACTTCATCTTGACA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 763 TGGAAATGGCTATTGTCATGGCAAGGGATGCGGGCATGGATTGGATACTTCATCTGGACA 822
Query 841 CTGATGAGCTGATATACCCAGCAGGTGCTCGTGAGTACTCACTAAGACGGTTGCTGCTTG 900
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 823 CAGATGAGCTAATATACCCAGCAGGTGCTCGTGAGTACTCACTGAGACGGTTGCTGCTTG 882
Query 901 ATGTTCCTCCAAATGTGGATATGGTTATATTTCCAAATTACGAAAGCAGCGTAGAAAGAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ATGTTCCTCCAAATGTGGATATGGTTATATTTCCAAATTACGAAAGCAGCGTAGAAAGAG 942
Query 961 ATGATATCAAGGATCCTTTTACAGAGGTGTCAATGTTCAAGAAGAATTATGATCATCTTC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 ATGATATCAAGGATCCTTTTACAGAGGTGTCAATGTTCAAGAAGAATTATGATCATCTTC 1002
Query 1021 CAAAAGATACATATTTTGGAATGTACAAAGAAGCAACACGAAATAATCCAAATTACTTTT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1003 CAAAAGATACATATTTTGGAATGTACAAAGAAGCAACACGAAATAATCCAAATTACTTCT 1062
Query 1081 TGACTTATGGTAACGGCAAATCAGTTGCTCGGGTTCAAGATCACCTTCGTCCAAATGGAG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TGACTTATGGTAACGGCAAATCAGTTGCTCGGGTTCAAGATCACCTTCGTCCAAATGGAG 1122
Query 1141 CACACAGATGGCATAATTACATGAAAACTCCCAATGAGATCAAATTGGAGGAGGCTGCTG 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1123 CACACAGATGGCATAATTACATGAAAACTCCCAATGAAATCAAATTGGAGGAGGCTGCTG 1182
Query 1201 TCCTACACTACACATATTCAAAATTTTCTGACTTAACATCCAGGCGTGATCGATGTGGCT 1260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 TCCTACACTACACATATGCAAAATTTTCTGACTTAACATCCAGGCGTGATCGATGTGGCT 1242
Query 1261 GTAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGACTTTGACAGATCTGCAT 1320
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1243 GCAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGACTTTGATAGATCTGCAT 1302
Query 1321 TTATAATTGCGTCAACAGCAACTGACGAAGAAATGCTAAGCTGGTACCGTGAACACGTTG 1380
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1303 TTATAATTGCGTCAACAGCAACTGAAGAAGAAATGTTAAGCTGGTACCGTGAACATGTTG 1362
Query 1381 TGTGGGGTGACAAAGACGTGAAGACGAAACTCCTTAGGAAGGGTATTCTGACTCGCATCT 1440
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 TGTGGGGCGACAAAGAGGTGAAGACGAAACTCCTTAGGAAGGGTATTCTGACTCGCATCT 1422
Query 1441 ATTCACCAATGGTTGTTATACAAGCATTGAAAGAATCTGGTGTCTTCAGCTCGGTTGTCT 1500
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1423 ATTCACCAATGGTTGTTATACAAGCATTGAAAGAATCTGGTGTCTTTAGCTCGGTTGTCT 1482
Query 1501 CATCAGCT-TCTACAAATCTGTCAAAGAAAAAGTTCTTATCATCAATTCACAAAAGCAAC 1559
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CATCAG-TGTCTACAAATCTTTCAAAGAAAAAGTTCTTATCATCAATTCACAAAAGCAAC 1541
Query 1560 TCATCCAGGTCTACTGCATCTGAGTCCCTTCCATCAAAGGAAAGCAAGTCTGAGGGCATC 1619
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1542 TCATCCAGGTCTACTGCATCTGAGTCCCTTCCATCAAAGGAAAACAAGTCTGAAGGCATC 1601
Query 1620 TCTGCAAGGCACCTTCTTGAGGCTGAATCAGCCATCCCTCCTTTATCGCCACCTGGGATG 1679
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1602 TCTGCAAGGCACCTTCTTGGGGATGAATCAGCCATCCCTCCTTTATCGCCACCTGGGATG 1661
Query 1680 GAACAAGCTAGATTTTTTACAGAGGATTAACAGGTTTTAGCACGGAGCTGATGCATTCGC 1739
||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1662 GAACACGCTAGATTTATCACAGAGGATTAACAGGTTTTAGCATTGAGCTGATGCATTCGC 1721
Query 1740 TTTTACTGATATTGATACTGGTTGCAATATGAGTGCTGTGTAGCTTTAGGATGGCAAATG 1799
|||||| |||||||||||||| | |||||||||| |||||||||||||||| ||||| ||
Sbjct 1722 TTTTACAGATATTGATACTGGGTACAATATGAGTACTGTGTAGCTTTAGGAAGGCAAGTG 1781
Query 1800 AAGTGGAACAAAGAAGAGTGAAGAAAGC-GGCTTTGTGTGATTCTTCCTAATCATATTGA 1858
|||||||||| |||||| ||||||||| || |||||| ||||||||| |||||| ||||
Sbjct 1782 AAGTGGAACATAGAAGAACGAAGAAAGCAGG-TTTGTGCGATTCTTCCCAATCATCTTGA 1840
Query 1859 AAAGTCATCGATTCTCTTGTCTCATTTTGCTCTCCCTCTGCAACTTATGATAGATGAGTT 1918
|| | ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AA-GACATCGGTTCTCTTATCTCATTTTGCTCTCCCTCTGCAACTTATGATAGATGAGTT 1899
Query 1919 TGCAGCATTTTTCTGTTGTCATTGTTACTTCTATGTAAGTTTATTACTATGTACAGAACT 1978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1900 TGCAGCATTTTTCTGTTGTCATTGTTATTTCTATGTAAGTTTATTACTATGTACAGAACT 1959
Query 1979 TCAAAGCACAGAG-CCTTGGACTCAT 2003
||||||||||||| ||| ||| ||||
Sbjct 1960 TCAAAGCACAGAGGCCT-GGAATCAT 1984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5