BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08560.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317662 jgi|Araly1|317662|fgenesh1_pm.C_scaffold_3000678 1142 0.0
Ahg489953 jgi|Araly1|489953|fgenesh2_kg.6__3087__AT4G11150.1 154 9e-37
> Ahg317662 jgi|Araly1|317662|fgenesh1_pm.C_scaffold_3000678
Length=708
Score = 1142 bits (618), Expect = 0.0
Identities = 679/709 (96%), Gaps = 2/709 (0%)
Strand=Plus/Plus
Query 1 ATGAACGATGCGGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGAA 60
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGAACGATGCAGATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTTATCCGCCAAGAA 60
Query 61 GCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGAAAGA 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAGAAGAGAAAGCAAATGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATCGAAAGA 120
Query 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTATGACCGCAAGCTCAAG 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CTTCAGCTTCTCGAGTCTGCCAAGCGTAAGCTCCGTCAAGACTACGACCGCAAGCTCAAG 180
Query 181 CAGGTTGATATCCGCAAGCGAATCGACTACTCCACACAACTGAATGCAAGTAGGATTAAG 240
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 181 CAGGTCGATATCCGCAAGCGAATCGACTACTCCACGCAACTTAATGCAAGTAGGATTAAG 240
Query 241 TACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGAC-TCCGCAGCTAAGGATCT 299
||||||||||| ||||| ||||||||||| |||||||||| | || ||||||||||||||
Sbjct 241 TACCTTCAAGCACAAGACGACGTTGTCACCGCCATGAAAG-CGTCAGCAGCTAAGGATCT 299
Query 300 TCTCCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTCGTGTCTCCAACGACAAGAACAATTACAAGAAGCTTCTTAAGAGTCTCATCATTGA 359
Query 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGAGATGCAGAGAAATGGACAAGAA 419
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 360 GAGTTTGCTGCGCCTGAAAGAGCCATCAGTGCTGCTGCGATGCAGAGAGATGGACAAGAA 419
Query 420 GGTTGTTGAATCGGTCATTGAAGATGCTAAAAGACAGTACGCGGAAAAAGCCAAAGTCGG 479
|||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 420 GGTTGTTGAATCAGTCATCGAGGATGCTAAAAGACTGTACGCGGAAAAAGCCAAAGTCGG 479
Query 480 GTCTCCTAAGATCACCATCGACGAAAAGGTCTTCCTCCCTCCACCTCCTAATCCGAAGCT 539
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 480 GTCTCCTAAGATCACCATCGACGACAAGGTCTTCCTCCCTCCACCTCCTAATCCTAAGCT 539
Query 540 CCCTGATTCCCACGACCCTCACTGCTCGGGTGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 CCCTGATTCCCACGATCCTCACTGCTCGGGCGGGGTGGTGCTGGCCTCTCAAGACGGCAA 599
Query 600 GATTGTCTGCGAGAACACTTTAGACGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GATTGTCTGTGAAAACACTTTAGATGCACGCCTTGACGTCGCCTTCAGACAGAAGCTTCC 659
Query 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGCATGA 708
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 CCAGATCCGGACGCGCCTCGTTGGAGCTCCTGAAACCTCCAGAGTATGA 708
> Ahg489953 jgi|Araly1|489953|fgenesh2_kg.6__3087__AT4G11150.1
Length=1009
Score = 154 bits (83), Expect = 9e-37
Identities = 236/309 (76%), Gaps = 14/309 (5%)
Strand=Plus/Plus
Query 1 ATGAACGATGCG-GATGTGTCAAAGCAGATACAGCAGATGGTCCGGTTCATCCGGCAAGA 59
|||||||| | | ||||| || | |||||| ||||||||||| | || ||||| |||||
Sbjct 127 ATGAACGACG-GAGATGTATCGAGGCAGATCCAGCAGATGGTGAGATTTATCCGCCAAGA 185
Query 60 AGCAGAAGAGAAAGCAAACGAGATCTCCATCTCCGCCGAGGAGGAATTCAACATAGA-AA 118
||||||||||||||||||||||||||| | ||||| || || ||||||||||| || ||
Sbjct 186 AGCAGAAGAGAAAGCAAACGAGATCTCGGTTTCCGCTGAAGAAGAATTCAACATTGAGAA 245
Query 119 GACTTCAGCTTCTCGAGTCTGCCAAGC-GTAAGCTCCGTCAAGACTATGACC-GCAAGCT 176
|||||||||| | ||| | | ||| | ||| || | ||||| ||||| | |||
Sbjct 246 -ACTTCAGCTTGTTGAGGCGGAGAAGAAG-AAGATCAGGCAAGATTATGAGAAG-AAGGA 302
Query 177 CAAGCAGGTTGATATCCGCAAGC-GAATCGACTACTCCACACAACTGAATGCAAGTAGGA 235
||||| | |||| | |||||| || | || ||||| | || || ||||| ||||
Sbjct 303 GAAGCAAGCTGATGTTCGCAAGAAGATT-GATTACTCTATGCAGCTAAATGCTTCAAGGA 361
Query 236 TTAA-GTACCTTCAAGCTCAAGATGACGTTGTCACTGCCATGAAAGACTCC-GCAGCTAA 293
| || || | ||||||| || || || |||||| ||||||||||||| | || |||||
Sbjct 362 TCAAAGTTC-TTCAAGCGCAGGACGATATTGTCAATGCCATGAAAGAC-CAAGCTGCTAA 419
Query 294 GGATCTTCT 302
|||||||||
Sbjct 420 GGATCTTCT 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5