BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08570.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478155 jgi|Araly1|478155|fgenesh2_kg.3__856__AT3G08570.1 2760 0.0
> Ahg478155 jgi|Araly1|478155|fgenesh2_kg.3__856__AT3G08570.1
Length=1834
Score = 2760 bits (1494), Expect = 0.0
Identities = 1676/1767 (95%), Gaps = 0/1767 (0%)
Strand=Plus/Plus
Query 88 ATATTCTCAGATGTTGCGGGAGACATCACAATTGTTGTTGATGGAGAGTCCTTTTTACTC 147
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 68 ATATTCTCAGACGTTGCGGGTGACATCACAATCGTTGTTGATGGAGAGTCCTTTTTACTC 127
Query 148 CACAAGTTTCCTTTAGTGGCTCGGTGTGGAAAGATTAGGAAAATGGTGGCAGAGATGAAA 207
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CACAAGTTTCCTCTGGTGGCTCGGTGTGGAAAGATTAGGAAAATGGTGGCAGAGATGAAG 187
Query 208 GAATCATCTTCAAATCTCTCGCATACAGAGCTCCGAGACTTTCCAGGTGGGTCTAAGACG 267
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 188 GAATCATCTTCAAACCTCTCGCATACAGAGCTACGAGACTTTCCAGGTGGGTCTAGGACG 247
Query 268 TTTGAACTCGCCATGAAGTTCTGCTACGGCATCAACTTCGAGATCACTATCTCCAACGTG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TTTGAACTCGCCATGAAGTTCTGCTACGGCATCAACTTCGAGATCACTATCTCCAACGTG 307
Query 328 GTTGCTATCCGTTGCGCAGCTGGTTATCTTGAGATGACAGAGGACTTCAAAGAAGAGAAT 387
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 308 GTTGCTATCCGTTGCGCAGCTGGTTATCTCGAGATGACAGAGGGCTTTAAAGAAGAGAAT 367
Query 388 TTGATTGCGCGGACCGAGACTTACCTCGAGCAAGTCGCGTTTCGCAGTCTTGAGAAGTCT 447
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TTGATCGCACGGACTGAGACTTACCTCGAGCAAGTCGCGTTTCGCAGTCTTGAGAAGTCT 427
Query 448 GTGGAAGTCCTCTGTTCCTGTGAGACGCTTTATCCTCAAGACATTGCTGAAACTGCTCAC 507
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| | |
Sbjct 428 GTGGAAGTTCTCTGTTCCTGTGAAACGCTTCATCCTCAAGACATTGCTGAAACTGCCCGC 487
Query 508 ATTCCTGATAGATGTGTGGAGGCTATCGCTGTGAATGCTTGCAGAGAACAGTTAGTGTTA 567
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 488 ATTCCTGAAAGATGCGTGGAGGCCATCGCTGTGAATGCTTGCAGAGAACAGTTAGTTTTG 547
Query 568 GGGCTGTCACGGCTGAACCGAGGCACCGAGTCAGGGGAACTCAAGCGAGGAGATAGTCCT 627
||||| || |||||||||||||||| |||||||| |||| |||| |||||||||||||||
Sbjct 548 GGGCTATCGCGGCTGAACCGAGGCAACGAGTCAGCGGAAGTCAACCGAGGAGATAGTCCT 607
Query 628 GAGTGGTGGATTGAAGACCTCTCTGCTCTGAGGATTGACTATTACGCACGAGTTGTCTCT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GAGTGGTGGATTGAAGACCTCTCTGCTCTGAGGATTGACTATTACGCACGAGTTGTCTCT 667
Query 688 GCGATGGCTAGAACAGGCTTGCGGTCAGAGAGTATCATAACGTCTTTGATGCATTACGCT 747
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 668 GCGATGGCTAGAACAGGCTTGCGGTCAGAGAGTATCATAACGTCTCTGATGCATTACGCT 727
Query 748 CAAGAATCGTTGAAAGGTATTCGAAACTGCAAGGAGCGAACCAAGCTCGATTCGGGTACT 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 728 CAAGAATCGTTGAAAGGTATTCGAAACTGCAATGAGCGAACCAAGCTCGATTCAGGTACA 787
Query 808 TTTGAGAATGAACAGAGGAACGTCCTTGAAGCCATTGTTAGTCTTTTCCCAAATGACAAT 867
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 788 ATTGAGAATGAACAGAGGAACGTCATTGAAGCCATTGTTAGTCTTTTCCCGAATGACAAA 847
Query 868 GTCCCTCTGAGTTTCCTCTTTGGAATGTTGAGGGTCGGGATTACCATAAACGTAGCCATC 927
|| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 848 GTTCCTCTGAGTTTCCTCTTCGGAATGTTGAGGGTTGGGATTACTATAAACGTAGCCATC 907
Query 928 TCTTGCAGGCTCGAGCTCGAGCGGAGAATCGCTCAGCAGCTGGAAACAGTCTCCCTCGAT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 908 TCTTGCAGGCTCGAGCTCGAGCGGAGAATCGCTCAGCAGCTGGAAACAGTCTCTCTCGAT 967
Query 988 GATCTACTCATACCTGTTGTCCGAGACGGAGATTCCATGTACGATGTAGACACTGTCCAT 1047
|||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||
Sbjct 968 GATCTACTCATACCTGTTGTCCAAGAAGGTGATTCCATGTATGATGTGGACACTGTCCAT 1027
Query 1048 AGAATACTCGTCTGCTTTCTGAAGAAAATAGAGGAGGAAGAAGAATATGATGAAGATTGC 1107
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1028 AGAATACTCGTCTGCTTTCTGAAGAAAATAAAGGAGGAAGAAGAATATGACGAAGATTGC 1087
Query 1108 TGTTACGAGAACGAGACCGAGAATCTTACTGGTTCTATGTGCCACAGTTCATTGCTGAAA 1167
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 1088 TGTTACGAGAACGAGACCGAGAATCTTATTGGTTCTACGTGCCACAGCTCATTGCTGAAA 1147
Query 1168 GTGGGTCGGATCATGGATGCATACTTGGCAGAGATTGCACCAGACCCGTGTCTGAGTCTT 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GTGGGTCGGATCATGGATGCATACTTGGCAGAGATTGCACCAGACCCGTGTCTGAGTCTC 1207
Query 1228 CACAAGTTCATGGCTTTGATAGAGATATTGCCTGATTACGCACGTGTCATGGATGATGGG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CACAAGTTCATGGCTTTGATAGAGATATTGCCTGATTACGCACGTGTCATGGATGATGGG 1267
Query 1288 CTATACAGAGCCATTGATATGTTTCTAAAGGGGCATCCGTCGCTGAACGAACAAGAATGT 1347
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1268 CTATACAGAGCCATTGATATGTTTCTAAAGGGGCATCCCTCGCTGAACGAACAAGAATGT 1327
Query 1348 AAGAGTCTCTGCAAATTCATAGACACTCAGAAACTTTCACAAGAAGCATGCAACCATGTG 1407
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1328 CAGAGTCTCTGCAAATTCATAGACACTCAGAAACTCTCACAAGAAGCATGCAACCATGTG 1387
Query 1408 GCTCAGAACGATCGGCTGCCGATGCAGATGGTGGTCCGAGTCCTCTACTCAGAACAGCTG 1467
|||||||| |||||||| ||| ||||||||||||| ||||| |||||||| ||||| |||
Sbjct 1388 GCTCAGAATGATCGGCTACCGGTGCAGATGGTGGTTCGAGTTCTCTACTCGGAACAACTG 1447
Query 1468 CGTATGAAGAATGTAATGTCCGGAGAGTCAGGGGAAGGGCTATTGCTGTCTTCTCAGAAA 1527
|| ||||||||||| ||||||||||||||||||| ||| ||||| |||| |||||||||
Sbjct 1448 CGGATGAAGAATGTTGTGTCCGGAGAGTCAGGGGATGGGTTATTGTTGTCGTCTCAGAAA 1507
Query 1528 CATAGTAGCGAGAACCCGAGCCGAGCTGTGTCTCCGAGAGACACTTATGCCTCACTGAGG 1587
| |||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 1508 CTTAGTAGCGGGAACCCGAGCGGAGCTGTGTCTCCGAGAGACACTTATGCATCGCTGAGG 1567
Query 1588 AGGGAGAATAGAGAGCTGAAGCTGGAGATTTCAAGGGTGAGAGTGAGGCTGACTGAGTTG 1647
|||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct 1568 CGGGAGAATAGAGAGCTGAAGCTGGAGATCTCGAGGGTGAGAGTGAGACTGACCGAGTTA 1627
Query 1648 GAGAAGGAGCAGATTTTGATGAAACAGGGGATGATGGAGAAGTCAGGTCATGGTGGAACA 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GAGAAGGAGCAGATTTTGATGAAACAGGGGATGATGGAGAAGTCAGGTCATGGTGGAACA 1687
Query 1708 TTGCTGACCTCACTTTCCAAAGGGATTGGGAGGATTTCGATATTTGGTGGAGGACCTACA 1767
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1688 TTGCTGACCTCGCTTTCCAAAGGGATTGGGAGGATTTCTATATTTGGTGGAGGACCTACA 1747
Query 1768 GAAGGGAAGCTGCGGAATGCTAACCGCAAATCCAAGTCAAGGTTGGAGAGAAAAACCGTT 1827
|||| |||||||||||| |||||||||||||| | ||| ||||||||||||||||| |||
Sbjct 1748 GAAGAGAAGCTGCGGAAGGCTAACCGCAAATCTAGGTCGAGGTTGGAGAGAAAAACAGTT 1807
Query 1828 AGGAGCCGACCAGAGTCTATGTTTTAG 1854
|||||||||||||||||||||||||||
Sbjct 1808 AGGAGCCGACCAGAGTCTATGTTTTAG 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5