BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08600.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478161 jgi|Araly1|478161|fgenesh2_kg.3__862__AT3G08600.1 2013 0.0
> Ahg478161 jgi|Araly1|478161|fgenesh2_kg.3__862__AT3G08600.1
Length=1406
Score = 2013 bits (1090), Expect = 0.0
Identities = 1334/1441 (93%), Gaps = 59/1441 (4%)
Strand=Plus/Plus
Query 6 ctctctctctctcttttccaccggcgaccattcattctctctcctcctcctcctcctcct 65
|||||||||||||||||||||||||||||||||| | | || || ||||||||
Sbjct 1 CTCTCTCTCTCTCTTTTCCACCGGCGACCATTCA-------T--T-CT-CT-CTCCTCCT 48
Query 66 cctcctcagcttcctccattgctccttaaccctcattcctcGATTTGTTCTTCTCT---T 122
||||| | |||||||||||| | | ||||||||||||||||||||||||||
Sbjct 49 CCTCCGC--CTTCCTCCATTG---C-T---CCTCATTCCTCGATTTGTTCTTCTCTACAC 99
Query 123 CACCATTTCCCCTTTTTACCCTTTTT---CTACTCAGACGTGACGGCGACTTTTTATTCC 179
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 100 CACCAATTCCCGTTTTTACCCTTTTTGAACTACTCAGACGTGACGGCGACTTTTTATTAC 159
Query 180 TGTGTCTCCCACCTTTGACTCGCCCTGGGGGGAtttttttttGCTCCAGAGGCGAAAG-A 238
|| ||||| || |||||||||||||| |||||| |||||||||||||||||||| || |
Sbjct 160 TGAGTCTCACATCTTTGACTCGCCCT-GGGGGA--TTTTTTTGCTCCAGAGGCGACAGAA 216
Query 239 AACaaaaaaa-aGCAATGGGGTTTCTCCGTTGTCTCCAGCTGCTGCTGCTTCTGTTtcta 297
|| ||||||| | |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 217 AAAAAAAAAACAACAATGGGGTTTCTCCGTTGTCTCCAG-T--TGCTGCTTCTGTTTCTA 273
Query 298 tctcttcgtctacaaaagctctctgctcaatcttcttcacccaatgcttcttcttcttc- 356
||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||
Sbjct 274 TCTCTTCGTCTACAAAAGCTCTCGGCTCAATC-TC-T-ACCCAATGCTTCTTCTTCTTCT 330
Query 357 t-t-cactcgatgctcttcttcaAGATTACTCTTTTAGAGCC-TTGCTTCGTCCTCGTAC 413
| | | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 331 TCTCCTCTCGATGCTCTTCTTCAAGATTACTCTTTTAGAGCCTTTG-TTCGTCCTCGTAC 389
Query 414 CGGCATTCTCTACGAGGCTACTACTGTTCCTTCCAATTTGACTGGGATCAAACTCGCTGC 473
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CGGCATTCTCTACGAAGCTTCTACTGTTCCTTCCAATTTGACTGGGATCAAACTCGCTGC 449
Query 474 TATGAGACTCAGAAGCGGAAGCTTTAGAAAACGTGGAGTCACTCCTTTTAATGAGTTCTC 533
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 450 CATGAGACTCAGAAGCGGAAGCTTTAGAAAACGTGGAGTCACTCCTTTTAAAGAGTTCTC 509
Query 534 AATTCCCAGCGGCGTTATCGTCAAGCCGTATGTGACAAGGCTTGTTTTGGTTTATCAAAA 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 510 AATTCCCAGCGGCGTTATCGTCAAGCCGTATGTGACAAGGCTTGTCTTGGTTTATCAAAA 569
Query 594 CCTAGCTAATTTCTCTCACTTGTATTACCCTTTGTCTGGTTATGATTATGTCGCTCCTGT 653
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 570 CCTAGCTAATTTCTCTCACTTGTATTACCCTTTGTCTGGTTACGATTATGTCGCTCCTGT 629
Query 654 CTTGGGTCTTCTCGCTTACGATGCTAAGAATCTCTCTGCGCTTAATTTGCCTCAGCTTGA 713
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 630 CTTGGGTCTTCTCGCTTACGATGCTAAGAATCTCTCTGCGGTTAATTTGCCTCAGCTTGA 689
Query 714 TTTAAGGGTGTCTAATGATCCTATCAGAATCGATTTCTCTGATCTGGAACGAATCCCGCA 773
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 690 TTTGAGGGTGTCTAATGATCCTATCAGAATCGATTTCTCTGATCTGGAACGAATCCCACA 749
Query 774 AGGGTCTAGTGCTAAGTGTGTTAGATTCGATTCTAAAGGTGAAGCGAGTTTCAGCGATTC 833
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 750 AGGGTCTAGTGCTAAGTGTGTTAGGTTTGATTCTAAAGGTGAAGCGAGTTTCAGCGAATC 809
Query 834 GATTCAGCCTGGAAACACATGCGAGACTGAGCATCAGGGACATTTCTCTGTGGTGGTGAA 893
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 810 GATTCAGCCTGGAAACACATGCGAGACTGAGCATCAGGGACATTTCTCAGTTGTGGTGAA 869
Query 894 ATCTGTGGCTTCTGCTCCGAGTCTAGCTCCTCC-TGGGAT-TGAGAGTAAGAAGAAGAAG 951
||||||||||||||||||||||| ||||||||| ||||| || || |||||||||||
Sbjct 870 ATCTGTGGCTTCTGCTCCGAGTCCAGCTCCTCCAGGGGATAGGA-AG-GAGAAGAAGAAG 927
Query 952 AAGAGCTCTGATTCCAATTCCAAGACTTGGATCATTGTTGGGTCGGTGGTTGGTGGATTG 1011
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 928 AAGAGCTCTGAATCCAATTCCAAGACATGGATCATTGTTGGGTCGGTGGTAGGTGGATTG 987
Query 1012 ATACTGTTGGGGCTTTTACTGTTTCTGGTTTTGAGATGTCGAAATTACAAGAAGCAAGAG 1071
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 988 ATACTGTTGGGGCTTTTACTGTTTCTGGTTTTGAGATGTCGGAATTATAAGAAGCAAGAG 1047
Query 1072 AAAATGAGGGAGATGGAGAGAGCTGGAGAGACAGGGGAAGCTCTGAGGATGACTCAGGTT 1131
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1048 AAAATGAGGGAGATGGAGAGAGCTGGTGAGACAGGGGAAGCTCTGAGAATGACTCAGGTC 1107
Query 1132 GGTGAAACAAGAGCACCAACTGCTACTACGACTCGTACACAACCAATGCTTGAAACCGAA 1191
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GGAGAAACTAGAGCACCAACTGCTACTACGACTCGTACACAACCAATGCTTGAAACCGAA 1167
Query 1192 TACGCAGCTTAGGATACTTT-TGTG--T-A-catcatcatcatcatcacatcttcttgat 1246
|||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1168 TACGCAGCTTAGGATACTTTGTGTACATCATCATCATCATCATCATCACATCTTCTTGAT 1227
Query 1247 catcTGTTACTGtctttttctt-tttttcttctacaattattcttcttttggtaaagtgt 1305
||||||||||| |||| ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1228 CATCTGTTACT-TCTTCTTCTTCTTTTT-TTCTTCAATTATTCTTCTTTTGGTAAAGTGT 1285
Query 1306 ttcttttt----ctgattattttttctttGTGGTAAGCAAGTTGATACTTCCACATTCAT 1361
|| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1286 TTTTTTTTTTTTCTGATTATTTTTTCTTTGTGGTTAGCAAGTTGATACTTCCACATTCAT 1345
Query 1362 CTTGTTTCTCTGCTGGTGATAAGGAAATAAGTAATATTGTTTTCTTCTTGTGCTCTCAAA 1421
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1346 CTTGTTTCTCTGCCGGTGATAAGGAAATAAGTAATATTGTTTTCTTGTTGTGCTCTCAAA 1405
Query 1422 T 1422
|
Sbjct 1406 T 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5