BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G08610.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478162 jgi|Araly1|478162|fgenesh2_kg.3__863__AT3G08610.1          826    0.0  


> Ahg478162 jgi|Araly1|478162|fgenesh2_kg.3__863__AT3G08610.1
Length=519

 Score =  826 bits (447),  Expect = 0.0
 Identities = 496/520 (95%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  3    AGAAGCACAATCGGAAGAAAGGAGAAGACGAAGATGTCGTTGGTATGGTTGGAAGCGATG  62
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGAAGCACAATCGAAAGGAAGGAGAAGACGAAGATGTCGTTGGTATGGTTGGAAGCGATG  60

Query  63   TTGCCTCTCGGAATCATCGGTGGGATGCTCTGTATCATGGGCAATTCTCAGTACTACATC  122
            ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  61   TTGCCTCTCGGAATCATCGGTGGGATGCTTTGTATCATGGGAAATTCTCAGTACTACATC  120

Query  123  CACAAAGCTTATCATGGCCGTCCTAAGCACATCGGCCACGATGAATGGGATGTTGCTATG  182
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  CACAAAGCTTATCATGGCCGTCCGAAGCACATCGGCCACGATGAATGGGATGTTGCTATG  180

Query  183  GAAAGACGCGACAAGAAAGTCGTCGAGAAAGCTGCAGCTCCTTCCTCATGATTCGCTTTA  242
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct  181  GAAAGACGCGACAAGAAAGTCGTCGAGAAAGCTGGAGCTCCTTCCTCATGATCCGCTTAA  240

Query  243  TCTCTTTTGTGTTCCTCAGGGGCTTAAGGTGACCACTTGTGGTGACAAATAAAGTGCATT  302
            ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct  241  TCTCTTTGGTGTTCCTCAGGGGCTTAAGGTGAAGACTTGTGGTGACAAATAAAGTGCATT  300

Query  303  CCAGAAGAAGAAGAAGCTGGGGGATCTAGTACTTTCATTCCCATTTGATTTTCCTTGGAC  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCAGAAGAAGAAGAAGCTGGGGGATCTAGTACTTTCATTCCCATTTGATTTTCCTTGGAC  360

Query  363  ATATTAAAGCTTTCAGAAATCAGACCTCAATAACATTTGGTTTATCAATATTTCTCTAT-  421
            || |||||||||||||||||||||||| |||  | ||||||||||| | |||||||||| 
Sbjct  361  ATGTTAAAGCTTTCAGAAATCAGACCTTAATGGCTTTTGGTTTATCTACATTTCTCTATA  420

Query  422  TCGTGATATTTTGTATGCTTTTAAGTTGCATGATACACTGAACTACTCTCTTGCTGTGTG  481
            | |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  421  T-GTGATAATTTGTATGCTTTTGAGTTGCATGATACACTGAACTAGTCTCTTGCTGTGTG  479

Query  482  AGTGAATAAATGAATATCTGGAAAGATGGCTCATCCTAGT  521
            ||||||||||||||| ||||||||||||||||||||||||
Sbjct  480  AGTGAATAAATGAATGTCTGGAAAGATGGCTCATCCTAGT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5