BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08620.1
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478163 jgi|Araly1|478163|fgenesh2_kg.3__864__AT3G08620.1 1810 0.0
> Ahg478163 jgi|Araly1|478163|fgenesh2_kg.3__864__AT3G08620.1
Length=1246
Score = 1810 bits (980), Expect = 0.0
Identities = 1179/1271 (93%), Gaps = 30/1271 (2%)
Strand=Plus/Plus
Query 3 AATGCTACTGTGACGACTCTGTTTGCTTCTCTTCCTTTTCTTCCTCGGCAACAACAACAC 62
|||||| ||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 1 AATGCTGCTGTGACGACTCTGTTTAC-T-TGTTCCTTTTCTTCCTCGGCAACAACAACAC 58
Query 63 CCTTCC-TCTCCTCACTCCCTATCCGCCAAAATCTCTTCTTCTTCCTTTTTCTTATTTTC 121
|||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 59 CCTTCCTTCTCCTCACTCCCTATCCGCCAAAATCTCTTCTTCTTCTTTTTTTTTTTTTTC 118
Query 122 C-TTTCAATATCTGATAGCTGCAAAACAGAACCCACCATGTCTGGTCTGTATAATTATAA 180
| |||| ||||||||||||||||||||| || |||||||||||||||||||||| | | |
Sbjct 119 CTTTTC-ATATCTGATAGCTGCAAAACACAAACCACCATGTCTGGTCTGTATAA-T-T-A 174
Query 181 TAACTTCTCACCTTCTAGAGCCGCTTCTCCTCAGATTAGAACCCCTTCCTCCGATGTTGA 240
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 175 TAACTTCTCACCTTCTCGAGCCGCTTCTCCCCAGATTAGAACCACTTCCTCCGATGTTGA 234
Query 241 CAGTCAATACATATCTCAGTTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGT 300
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGTCAATACTTATCTCAATTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGT 294
Query 301 CTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCC 360
|||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 295 CTTACCTATATGTAGCCGACTTTTAAATCAAGAAATTTTTCGGATCACCGGAATGATGCC 354
Query 361 CAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTC 420
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 355 AAACCAAGGGTTTACCGATTTTGATAGGTTGCGGCATCGAAGTCCTAGTCCAATGGCTTC 414
Query 421 ACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACC 480
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 415 ACCAAATCTTATGTCTAATGTTCCCGGTGCTGGATTAGGTGGTTGGAATGGTCTTCCACC 474
Query 481 AGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCC 540
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 AGAGAGAATAGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCTGCTAGCCC 534
Query 541 AAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAA 600
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 535 AAGTTCATACCCAGTGAAGCGTATCTTGCGTTTAGATCTTCCAGTTGATACCTATCCGGA 594
Query 601 TTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGC 660
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 595 TTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCGTTGAAGCGTGTGGAAGC 654
Query 661 AACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 AACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGACAAAGA 714
Query 721 AGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCAT 780
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 715 AGAGAAACTGAAAGGTAAGCCCGGCTATGAGCATCTCAATGAGCAGCTGCATATCCTCAT 774
Query 781 TGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 775 TGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATTAT 834
Query 841 CGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCG 900
|||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 835 CGAGGAATTGGTCAAGCCCGTGGATGAGTCACATGATTACATCAAGAGGCAGCAGTTGCG 894
Query 901 AGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGT 960
|||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 895 AGAGCTCGCGTTACTGAATTCAAACTTGAGAGAAAACAGTCCAGGGCCGAGCGGTAGTGT 954
Query 961 CTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAAGAGCTTGAGAG 1020
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 955 CTCGCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGCTAAGAGCATGAGAG 1014
Query 1021 ATCCTAGATAAAAATTATGTGCATATGTGTATAACTGGCCTAATGGTGTTGGTTGAGTCT 1080
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct 1015 ATCCTAGATAAAAAAAATGTGTATATGTGTATAACTGGCCTAATAGTGTTGGTTGCGTCT 1074
Query 1081 GCTCTTGGTTCTTCTGCTTACCCTCTGATCCACACACTGATGCTTATACACAAAGCACCA 1140
| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1075 ACACTTGGTTCTTCTGCTTACCCTCTGAACCACACACTGATGCCTAAACACA--GCACCA 1132
Query 1141 AGAGAA-C--AGTTTCCTCCTTGACCGGGGTTTGATGCATTGTAACCATCAAAGATATTA 1197
|||||| | | |||||||||| || |||| ||||| | | || | | |
Sbjct 1133 AGAGAAGCCCATTTTCCTCCTTAACAGGGGGTTGAT--A------C-AT------T-T-A 1175
Query 1198 GATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATGGAGATC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1176 GATAATTTGGATTTATTCATGTGTTGAAGTAGTTGTATTCTTGACTTTGGAATAAAGATC 1235
Query 1258 TAGTTACATGT 1268
||||||| |||
Sbjct 1236 TAGTTACGTGT 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47386785831
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5