BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08640.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478165 jgi|Araly1|478165|fgenesh2_kg.3__866__AT3G08640.1 1768 0.0
Ahg928513 jgi|Araly1|928513|scaffold_300970.1 1057 0.0
> Ahg478165 jgi|Araly1|478165|fgenesh2_kg.3__866__AT3G08640.1
Length=1297
Score = 1768 bits (957), Expect = 0.0
Identities = 1176/1279 (92%), Gaps = 25/1279 (2%)
Strand=Plus/Plus
Query 20 TTCCATCCTAAAGATTGTAAAGGGAAACCGTTTTCGATTTTCAGAGAAGATCACAC-ATC 78
|||| ||||||||||| |||| |||| || |||||||| || |||| |||||| | |||
Sbjct 1 TTCCGTCCTAAAGATTCTAAAAGGAAGCCAATTTCGATTCTCGGAGAGGATCAC-CGATC 59
Query 79 TTTCGTCCCTTCACTGCCATACGTGTCGATAAAGATGGCGGCTATGGCGGCGAAGCTTCA 138
|||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTCGTCCATTCACGGCCATACTTGTCGATAAAGATGGCGGCTATGGCGGCGAAGCTTCA 119
Query 139 GTTATCGGCGAAATCTGATCAAAGCAGTGTGCGATTACCGAGAGTGATCAACCTCTCCCG 198
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 120 ACTATCGGCGAAATCGGATCAAAGCAGTGTACGATTACCGAGAGTGATCAATCTCTCACG 179
Query 199 CGATCCAACGACTAGAGTCTCGTTTCCGCGAAATGGATCAGTTTGTTCCCTCCACACCAA 258
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CGATCCAACGACTAGAATCTCGTTTCCGCGAAATGGATCAGTTTGTTCACTCCACACCAG 239
Query 259 TTTCTCTTCTCCACATCTCGCGAAACCTTGCGCCGGAGGTGGTGGTGGTGGAAGCACCGG 318
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 240 TTTCTCTTCTCCACATCTCCCGAAACCTTGCGCCGGAGGTGGTGGTGGTGGAAGCATCGG 299
Query 319 TAATAACGGCGGCGGAAGCGGAAGCGGAGGAGGAGGTGGTGGTTTTGGAGGTTCAGGGGG 378
|||| ||||||| ||||| |||||| | || ||| || ||||||||||| |
Sbjct 300 TAATCACGGCGGTGGAAGTGGAAGC-G-GG-GGA------GG---AGGAGGTTCAGGCAG 347
Query 379 TGAAGCAAGTGAAGAATCATCTCCATGGGGACCAATAGGGTTATTCATCCAAGGATGGAG 438
||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 348 TGAAGCAGGAGAAGAATCATCTCCATGGGGACCAATAGGGTCATTCATCCAAGGATGGAG 407
Query 439 ATCAAGAGTTGCAGCTGATCCTCAGTTCCCTTTTAAGGTACTAATGGAAGAGATCGTAGG 498
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 408 ATCACGAGTTGCAGCTGATCCTCAATTCCCTTTTAAGGTACTAATGGAAGAGATTGTTGG 467
Query 499 ACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCACGACCTAATTTCGGATTAAACGAGCT 558
||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 468 ACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCGCGCCCGAATTTCGGATTGAACGAGCT 527
Query 559 AGATTTCGTCTTCTCCACGCTCGTTGTAGGTTCGATTCTCAATTTCGTACTCATGTACAT 618
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 528 AGATTTCGTCTTCTCGACACTCGTTGTAGGTTCGATTCTCAATTTCGTACTCATGTACAT 587
Query 619 GTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCAGACTTTGCCTGGAATCTTTAGAAA 678
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 588 GTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCAGACCTTGCCTGGAATCTTTAGAAA 647
Query 679 CTGTCCATCAAGCCATATGTTTGAACAGGGTAGCTTCACCGTTATGAACCGTTTCGGGAC 738
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 648 CTGTCCATCAAGCCATATGTTTGAACAGGGTAGCTTCACGGTTATGAATCGTTTTGGGAC 707
Query 739 TCTTGTGTACAAAGGAATGGTTTTTGCTAGTGTAGGATTAGCTGCAGGTCTTGTAGGTAC 798
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 TCTTGTGTACAAAGGAATGGTTTTTGCCAGTGTAGGATTAGCTGCAGGTCTTGTAGGTAC 767
Query 799 TGCCATTTCTAATGGGTTGATTATGCTGAGGAAGAAGATGGACCCG-AGCTTCGAAACGC 857
|||||| |||||||||||||| |||||||||||||||||||||||| | ||| |||||||
Sbjct 768 TGCCATCTCTAATGGGTTGATCATGCTGAGGAAGAAGATGGACCCGGA-CTTTGAAACGC 826
Query 858 CAAACAAACCGCCACCGACTGTGCTTAATTCTTTAACTTGGGCAACTCATATGGGAGTGA 917
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 827 CAAACAAACCGCCACCGACTGTGCTTAATTCCTTAACTTGGGCTACGCATATGGGAGTGA 886
Query 918 GTGCGAATGCAAGGTACCAAACGTTGAATGGGATTGAGTTCTTGCTGGCAAAGGTGTTGC 977
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 887 GCGCGAATGTGAGGTACCAAACGTTGAATGGGATTGAGTTCTTGCTGGCAAAGGTGTTAC 946
Query 978 CCCCATTGGTGTTTAAGACAAGTGT-GATAGTTTTGAGGTGTGCAAACAATGTTGCTGGA 1036
| || |||||||||||||| |||| | | |||||||||||||| || |||||||| |||
Sbjct 947 CGCCTTTGGTGTTTAAGACCGGTGTAG-TGGTTTTGAGGTGTGCGAATAATGTTGCGGGA 1005
Query 1037 GGAATGTCGTTTGTTTTGTTGGCAAGGATGACGGGATCACAGTCGGTGGAGGAGAAGACA 1096
||||||||||||||| ||||||| ||| |||| |||||||||||||| ||||||||||||
Sbjct 1006 GGAATGTCGTTTGTTATGTTGGCGAGGCTGACAGGATCACAGTCGGTTGAGGAGAAGACA 1065
Query 1097 GAGATTTCAGAGAAAGAGAAGGATGATTGAATCTCATCCTAGTCTTTCAAGGTTTTTGTT 1156
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1066 GAGATTTCAGAGAAAGAGAAGGATGATTGAATCTCATCTTAGTCTTTCAAGGTTTTTGTT 1125
Query 1157 CCTGTGTGTTTTTCGCCAGTTCATAGGCTTCTTGAGTTGAAACCATTTGTGTTGGAATAA 1216
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CCCGTGTGCTTT-CGCCAGTTCATAGGCTTCTTGAGTTGAAACCATTTGTGTTGGAATAA 1184
Query 1217 ATAAGATGAATCCCTTCTTAGGT-CCATCCTA-T-T--GGATGTCATTGTTAGGCCAAGT 1271
| ||||||||||||||||||||| |||||||| | | ||||||||| |||||||||||
Sbjct 1185 ACAAGATGAATCCCTTCTTAGGTTCCATCCTAATATTTGGATGTCATCATTAGGCCAAGT 1244
Query 1272 TTGT-TGTTTTCTTTTTCA 1289
|| ||||||||||||||
Sbjct 1245 TTCACTGTTTTCTTTTTCA 1263
> Ahg928513 jgi|Araly1|928513|scaffold_300970.1
Length=1061
Score = 1057 bits (572), Expect = 0.0
Identities = 867/1005 (86%), Gaps = 38/1005 (4%)
Strand=Plus/Plus
Query 110 AAGATGGCGGCTATGGCGGCGAAGCTTCAGTTATCGGCGAAATCTGATCAAAGCAGTGTG 169
|||||||||||||||| |||||||||||| ||||| |||||||| ||||| |||| ||||
Sbjct 20 AAGATGGCGGCTATGGTGGCGAAGCTTCATTTATCAGCGAAATCAGATCAGAGCAATGTG 79
Query 170 CGATTACCGAGAGTGATCAACCTCTCCCGCGATCCAACGACTAGAGTCTCGTTTCCGCGA 229
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 80 CGATTGCCGAGAGTGATCAACCTCTCGCGCGATCCAACCACTAGAGTCTCGTTTCCACGA 139
Query 230 AATGGA-TCAGTTTGTTCCCTCCACACCAATTTCTCTTCTCCACATCTCGCGAAACCTTG 288
|| || ||||| | ||| ||| ||||||| || |||||| ||||||||| | || ||
Sbjct 140 CAT-GATTCAGTATCTTCACTCAACACCAACTTGTCTTCTACACATCTCGGGGTTCCATG 198
Query 289 CGCC---GGAGGTGGTGGTGGTGGAAGCACCGGTAATAACGGCGGCGGAAGCGGAAGCGG 345
|||| ||||||| |||||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 199 CGCCGGAGGAGGTGATGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGC-- 256
Query 346 AGGAGGAGGTGGTGGTTTTGGAGGTTCAGGGGGTGAAGCAAGTGAAGAATCATCTCCATG 405
|||||| ||||||| |||||||||| |||| || |||| ||| ||| ||||
Sbjct 257 -GGAGGA---GGTGGTTATGGAGGTTCA------GAAG-AA--GAAGGATCGTCTTCATG 303
Query 406 GGGACCAATAGGGTTATTCATCCAAGGATGGAGATCAAGAGTTGCAGCTGATCCTCAGTT 465
|||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 304 GGGACCAATAGGAATATTCATACAAGGATGGAGATCACGAGTTGCAGCAGATCCTCAGTT 363
Query 466 CCCTTTTAAGGTACTAATGGAAGAGATCGTAGGACTTAGCGCTTGTGTTCTCGGTGACAT 525
|||||| |||||||||||||||||| | || ||| ||||||| ||| || || |||||
Sbjct 364 CCCTTTCAAGGTACTAATGGAAGAGCTTGTTGGAGTTAGCGCCAATGTACTTGGCGACAT 423
Query 526 GGCTTCACGACCTAATTTCGGATTAAACGAGCTAGATTTCGTCTTCTCCACGCTCGTTGT 585
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 424 GGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCCACACTCGTTGT 483
Query 586 AGGTTCGATTCTCAATTTCGTACTCATGTACATGTTAGCT-CCTACTGCAGCAACTCTTG 644
||||||||||||||||||| |||||||||| | |||||| ||| |||||| | ||| ||
Sbjct 484 AGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCCT-CTGCAGTATCTCATG 542
Query 645 GCTCCTCTCAGA-CT-TTGCCTGGAATCTTTAGAAACTGTCCATCAAGCCATATGTTTGA 702
| ||||| || | | ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 543 GATCCTC-CA-ATTTATTGCCTGGAATCTTTAGAAGCTGTCCATCGAGCCATATGTTTGA 600
Query 703 ACAGGGTAGCTTCACCGTTATGAACCGTTTCGGGACTCTTGTGTACAAAGGAATGGTTTT 762
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ACAGGGTAGCTTCACTGTAATGAACCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTT 660
Query 763 TGCTAGTGTAGGATTAGCTGCAGGTCTTGTAGGTACTGCCATTTCTAATGGGTTGATTAT 822
||| | || ||||||||||||||||| || || || || || ||||| |||||||| ||
Sbjct 661 TGCGACCGTGGGATTAGCTGCAGGTCTAGTTGGAACCGCTATCTCTAACGGGTTGATCAT 720
Query 823 GCTGAGGAAGAAGATGGACCCGAGCTTCGAAACGCCAAACAAACCGCCACCGACTG-TGC 881
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| || | |||
Sbjct 721 GCTGAGGAAGAAGATGGATCCGAGCTTCGAAACGCCGAACAAACCACCACCTAC-GCTGC 779
Query 882 TTAATTCTTTAACTTGGGCAACTCATATGGGAGTGAGTGCGAATGCAAGGTACCAAACGT 941
| |||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 780 TGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTACCAAACGT 839
Query 942 TGAATGGGATTGAGTTCTTGCTGGCAAAGGT-GTTGCCCCCATTGGTGTTTAAGACAAGT 1000
|||||||| |||||||||||||| |||| | |||||| |||||||||||||||||||||
Sbjct 840 TGAATGGGGCTGAGTTCTTGCTGGAAAAG-TCGTTGCCGCCATTGGTGTTTAAGACAAGT 898
Query 1001 GTGATAGTTTTGAGG-T-GTGCAAACAATGTTGCTGG-AGGAATGTCGTTTGTTTTGTTG 1057
||||||| |||||| | ||| || ||||||| ||| |||||||||||||||| | |||
Sbjct 899 GTGATAGCGTTGAGGGTTGTG-AA-CAATGTTT-TGGGAGGAATGTCGTTTGTTATATTG 955
Query 1058 GCAAGGATGACGGGATCACAGTCGGTGGAGGAGAAGACAGA-GAT 1101
|| |||||||| ||||||||||| ||||||||| ||| ||| |||
Sbjct 956 GCGAGGATGACTGGATCACAGTCTGTGGAGGAGGAGA-AGAAGAT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5