BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G08660.1 Length=1749 Score E Sequences producing significant alignments: (Bits) Value Ahg478168 jgi|Araly1|478168|fgenesh2_kg.3__869__AT3G08660.1 2579 0.0 > Ahg478168 jgi|Araly1|478168|fgenesh2_kg.3__869__AT3G08660.1 Length=1821 Score = 2579 bits (1396), Expect = 0.0 Identities = 1616/1726 (94%), Gaps = 0/1726 (0%) Strand=Plus/Plus Query 7 TCAGACAGCACTTTGTCTCTCCCTTCTTCATCTCCTCCTTGTAACAATCGCTCCTCTGTT 66 ||||||||| || ||||||| ||||||| ||||||||| |||||| ||||||| ||||| Sbjct 4 TCAGACAGCCCTCTGTCTCTTTCTTCTTCCTCTCCTCCTAGTAACAGTCGCTCCCCTGTT 63 Query 67 CCTCCAACTTTCACCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 126 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 64 CCTCCAACTTTCTCCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 123 Query 127 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 183 Query 187 AAGATGGTGAGAGATCTCAAGGACTCTTCTTCTATGATTGAGCTTAGAGATTTCCCTGGT 246 || |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 184 AAAATGGTGAGAGATCTCAAGGACTCTTCATCTATGATTGAGCTCAGAGATTTCCCAGGT 243 Query 247 GGACCTTCGACGTTTGAACTCACCATGAAATTTTGCTACGGCATTAATTTCGATATCACT 306 |||||| || ||||||||||| |||||||||||||||||||||||||||| || |||||| Sbjct 244 GGACCTCCGTCGTTTGAACTCGCCATGAAATTTTGCTACGGCATTAATTTTGAGATCACT 303 Query 307 GCCTTTAACGTGGTCTCTCTCCGTTGCGCTGCTGGTTATCTTGAGATGACTGAGGACTAC 366 |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 304 GCCTCCAACGTGGTCGCTCTCCGTTGCGCTGCTGGTTATCTCGAGATGACTGAGGACTAT 363 Query 367 AAAGAACAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 426 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 AAAGAAAAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 423 Query 427 TTTCATGAATCTGTCCTAGTACTTTGCTCCTGCGAGACGCAAGAGATTGCTGAAACATAT 486 || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 424 TTCCATGAATCTGTCCTAGTACTTTGTTCCTGCCAGACGCAAGAGATTGCTGAAACATAT 483 Query 487 GAAATTCCTGACCGGTGCGTGGAGGCCATCGCCATGAATGCTTGCAGAAAGCAGTTAGTA 546 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 484 GAAATTCCTGACCGGTGCATGGAGGCCATCACCATGAATGCTTGCAGAAAGCAGTTAGTA 543 Query 547 TCAGGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTCGAGATGTGGACTGAAGAACTC 606 ||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 544 TCATGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTTGAGTTGTGGACTGAAGAACTC 603 Query 607 TCTGCTCTCGGGATTGATTACTACGTCCAAGTTGTATCTGCGATGGCGAGGTTAAGCGTG 666 ||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||| Sbjct 604 TCTGCTCTCGGGATTGATTACTACGCCCGAGTTGTATCTGAGATGGCGAGATTAGGCGTG 663 Query 667 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 723 Query 727 ATCGATCGAAACTGCCAGGAACAGAGGAAAATCGTTGAAGCCATGGTTAACCTTTTGCCG 786 ||| ||| |||||||||||| |||||||||||| ||||| ||||||||| |||||||||| Sbjct 724 ATCAATCCAAACTGCCAGGAGCAGAGGAAAATCATTGAAACCATGGTTACCCTTTTGCCG 783 Query 787 AATGACGAAAAAGGATCTTACTCTTTATCAATTATTCCTCTCGGTTTCCTCTTTGGAATG 846 ||| |||||||||||||||| |||||||| | |||||||||| ||||||||||||||||| Sbjct 784 AATAACGAAAAAGGATCTTATTCTTTATCGACTATTCCTCTCAGTTTCCTCTTTGGAATG 843 Query 847 CTCAAGGTCGGAACTATAATAGATATAGAGATCTCTTGCAGGCTCGAGCTTGAACGTAGA 906 || |||||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 844 CTTAAGGTCGGAACTATAATAGATATAGAAATCTCTTGCAGGCTCGAGCTCGAGCGTAGA 903 Query 907 ATCGGGCATCAGTTAGAGACCGCGTCTCTCGATGATCTGCTTATACCTTCTGTCCAAAAC 966 ||||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| Sbjct 904 ATCGGGCATCAGTTAGAGATTGTATCTCTCGACGATCTGCTAATACCTTCTGTCCAAAAC 963 Query 967 GAAGATTCAATGTACGATGTGGATACCGTCCACAGGATACTCACATTCTTTCTTGAGAGG 1026 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 964 GAAGATTCAATGTACGATGTGGATACTGTCCACAGGATACTCACATGCTTTCTTGAGAGG 1023 Query 1027 ATTGAAGAGGAAGATGATGAATGTGGTTACGATTCGGATTCCACTGGACAACACAGTTCG 1086 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 1024 ATTGAGGAGGAAGATGAAGAATGTGGTTACGAGTCGGATTCCACGGGACAGCACAGTTCA 1083 Query 1087 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGTTGAGATCGCACCGGATCCATAC 1146 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1084 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGCAGAGATCGCACCGGATCCATAC 1143 Query 1147 CTGAGTCTACACAAGTTTACGGCTATTATAGAGACACTACCCGAACACTCACGTATCGTT 1206 |||||||||| |||||| ||||| |||||||||||| ||||||||| |||||||||| | Sbjct 1144 CTGAGTCTACTCAAGTTCACGGCCATTATAGAGACATTACCCGAACGCTCACGTATCATA 1203 Query 1207 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATCCATTATTGACAGAA 1266 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1204 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATTCGTTATTGACAGAA 1263 Query 1267 GAAGAACGCAAGAAGCTATGCAACTTCATTGACTGCAAGAAACTTTCACAAGAAGCAAGC 1326 |||||| |||||| ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1264 GAAGAATGCAAGACGCTATGCAAATTCATTGACTGTAAGAAACTTTCACAAGAAGCAAGC 1323 Query 1327 AACCACGTGGCACAAAACGATCGGCTGCCTGTACAAATGGTGGTTAGAGTGCTTTACACA 1386 |||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| Sbjct 1324 AACCACGTGGCACAAAACGATCGGCTTCCTGTACATATGGTGGTTCGAGTGCTTTACACA 1383 Query 1387 GAACAGTTGCGACTGAAGAAAGCTCTGTCGGGAGATTCAGAAGAAGGGTCGTGGGTTTTG 1446 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1384 GAACAGTTGCGACTGAAGAAAGCTCTGTCCGGAGATTCGGAAGAAGGGTCGTGGGTTTTG 1443 Query 1447 CCTTCTGGAGTACAAAGCCGAGCGGTTTCGCCAAGAGACACGTATGCAGCGTTGAGGAGA 1506 | |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct 1444 TCGTCTGGAGTACAAAGCCGAACGGTTTCCCCAAGAGACACGTATGCATCGTTGAGGAGA 1503 Query 1507 GAAAACAGAGAGCTGAAGCTGGAAATATCAAGGATGAGAGTGAGAGTGAGCGAGTTAGAG 1566 ||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||| Sbjct 1504 GAAAACAGAGAGCTGAAGCTGGAGATATCGAGGATGAGAATGAGGGTGAGCGAGTTAGAG 1563 Query 1567 AAAGAACATAATTTGATGAAACATGAGATGATGGAGAAATCCGGTAATAATGGTGGAACG 1626 ||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| Sbjct 1564 AAACAACATAATTTGATGAAACATGAGATGATGGAGAAGTCCGGTAGTAATAGTGGAACC 1623 Query 1627 TTCTTGACGTCACTGTCCAAAGGAATTGGAAGGATCGCGACATTCGGTGGAGAAACCCGG 1686 |||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| |||| Sbjct 1624 TTCTTGACGTCATTGTCCAAAGGAATCGGAAGGATCGCGATATTCGGCGGAGAAAACCGG 1683 Query 1687 CAAAAGGTGAACCGGAAATCAAGGTCGGTGTCGGAGAGAAAATCAA 1732 |||||||| || || |||||||||||||| |||||||||||| ||| Sbjct 1684 CAAAAGGTTAATCGAAAATCAAGGTCGGTATCGGAGAGAAAAACAA 1729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65629492135 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5