BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08660.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478168 jgi|Araly1|478168|fgenesh2_kg.3__869__AT3G08660.1 2579 0.0
> Ahg478168 jgi|Araly1|478168|fgenesh2_kg.3__869__AT3G08660.1
Length=1821
Score = 2579 bits (1396), Expect = 0.0
Identities = 1616/1726 (94%), Gaps = 0/1726 (0%)
Strand=Plus/Plus
Query 7 TCAGACAGCACTTTGTCTCTCCCTTCTTCATCTCCTCCTTGTAACAATCGCTCCTCTGTT 66
||||||||| || ||||||| ||||||| ||||||||| |||||| ||||||| |||||
Sbjct 4 TCAGACAGCCCTCTGTCTCTTTCTTCTTCCTCTCCTCCTAGTAACAGTCGCTCCCCTGTT 63
Query 67 CCTCCAACTTTCACCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CCTCCAACTTTCTCCACTCGCATATTCTCTGATGTTGCGGGTGACATCATTGTTGTTGTC 123
Query 127 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GATGGAGAATCATTTCTACTTCACAAGTTTCCGTTAGTAGCTAGGAGTGGAAAGATGAGG 183
Query 187 AAGATGGTGAGAGATCTCAAGGACTCTTCTTCTATGATTGAGCTTAGAGATTTCCCTGGT 246
|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 184 AAAATGGTGAGAGATCTCAAGGACTCTTCATCTATGATTGAGCTCAGAGATTTCCCAGGT 243
Query 247 GGACCTTCGACGTTTGAACTCACCATGAAATTTTGCTACGGCATTAATTTCGATATCACT 306
|||||| || ||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 244 GGACCTCCGTCGTTTGAACTCGCCATGAAATTTTGCTACGGCATTAATTTTGAGATCACT 303
Query 307 GCCTTTAACGTGGTCTCTCTCCGTTGCGCTGCTGGTTATCTTGAGATGACTGAGGACTAC 366
|||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 GCCTCCAACGTGGTCGCTCTCCGTTGCGCTGCTGGTTATCTCGAGATGACTGAGGACTAT 363
Query 367 AAAGAACAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 426
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AAAGAAAAGAACTTGATCTTTCGAGCCGAGAATTACCTCGACCAGATCGTTTTTCGCAGT 423
Query 427 TTTCATGAATCTGTCCTAGTACTTTGCTCCTGCGAGACGCAAGAGATTGCTGAAACATAT 486
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 424 TTCCATGAATCTGTCCTAGTACTTTGTTCCTGCCAGACGCAAGAGATTGCTGAAACATAT 483
Query 487 GAAATTCCTGACCGGTGCGTGGAGGCCATCGCCATGAATGCTTGCAGAAAGCAGTTAGTA 546
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 484 GAAATTCCTGACCGGTGCATGGAGGCCATCACCATGAATGCTTGCAGAAAGCAGTTAGTA 543
Query 547 TCAGGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTCGAGATGTGGACTGAAGAACTC 606
||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 544 TCATGTTTATCAGAGGAGCTCAAGGGGAGAGATTGTCTTGAGTTGTGGACTGAAGAACTC 603
Query 607 TCTGCTCTCGGGATTGATTACTACGTCCAAGTTGTATCTGCGATGGCGAGGTTAAGCGTG 666
||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| |||||
Sbjct 604 TCTGCTCTCGGGATTGATTACTACGCCCGAGTTGTATCTGAGATGGCGAGATTAGGCGTG 663
Query 667 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CGGTCAGAGAGTATCGTCGCTTCTCTGGTGCATTACGCTAAAACATCATTAAAGGGTATC 723
Query 727 ATCGATCGAAACTGCCAGGAACAGAGGAAAATCGTTGAAGCCATGGTTAACCTTTTGCCG 786
||| ||| |||||||||||| |||||||||||| ||||| ||||||||| ||||||||||
Sbjct 724 ATCAATCCAAACTGCCAGGAGCAGAGGAAAATCATTGAAACCATGGTTACCCTTTTGCCG 783
Query 787 AATGACGAAAAAGGATCTTACTCTTTATCAATTATTCCTCTCGGTTTCCTCTTTGGAATG 846
||| |||||||||||||||| |||||||| | |||||||||| |||||||||||||||||
Sbjct 784 AATAACGAAAAAGGATCTTATTCTTTATCGACTATTCCTCTCAGTTTCCTCTTTGGAATG 843
Query 847 CTCAAGGTCGGAACTATAATAGATATAGAGATCTCTTGCAGGCTCGAGCTTGAACGTAGA 906
|| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 844 CTTAAGGTCGGAACTATAATAGATATAGAAATCTCTTGCAGGCTCGAGCTCGAGCGTAGA 903
Query 907 ATCGGGCATCAGTTAGAGACCGCGTCTCTCGATGATCTGCTTATACCTTCTGTCCAAAAC 966
||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||
Sbjct 904 ATCGGGCATCAGTTAGAGATTGTATCTCTCGACGATCTGCTAATACCTTCTGTCCAAAAC 963
Query 967 GAAGATTCAATGTACGATGTGGATACCGTCCACAGGATACTCACATTCTTTCTTGAGAGG 1026
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 964 GAAGATTCAATGTACGATGTGGATACTGTCCACAGGATACTCACATGCTTTCTTGAGAGG 1023
Query 1027 ATTGAAGAGGAAGATGATGAATGTGGTTACGATTCGGATTCCACTGGACAACACAGTTCG 1086
||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1024 ATTGAGGAGGAAGATGAAGAATGTGGTTACGAGTCGGATTCCACGGGACAGCACAGTTCA 1083
Query 1087 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGTTGAGATCGCACCGGATCCATAC 1146
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1084 TTGCTGAAAGTGGGACGGATCATGGATGCTTACTTGGCAGAGATCGCACCGGATCCATAC 1143
Query 1147 CTGAGTCTACACAAGTTTACGGCTATTATAGAGACACTACCCGAACACTCACGTATCGTT 1206
|||||||||| |||||| ||||| |||||||||||| ||||||||| |||||||||| |
Sbjct 1144 CTGAGTCTACTCAAGTTCACGGCCATTATAGAGACATTACCCGAACGCTCACGTATCATA 1203
Query 1207 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATCCATTATTGACAGAA 1266
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1204 GACGATGGGATCTACAGAGCCATTGATATGTATCTCAAGGCTCATTCGTTATTGACAGAA 1263
Query 1267 GAAGAACGCAAGAAGCTATGCAACTTCATTGACTGCAAGAAACTTTCACAAGAAGCAAGC 1326
|||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1264 GAAGAATGCAAGACGCTATGCAAATTCATTGACTGTAAGAAACTTTCACAAGAAGCAAGC 1323
Query 1327 AACCACGTGGCACAAAACGATCGGCTGCCTGTACAAATGGTGGTTAGAGTGCTTTACACA 1386
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1324 AACCACGTGGCACAAAACGATCGGCTTCCTGTACATATGGTGGTTCGAGTGCTTTACACA 1383
Query 1387 GAACAGTTGCGACTGAAGAAAGCTCTGTCGGGAGATTCAGAAGAAGGGTCGTGGGTTTTG 1446
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1384 GAACAGTTGCGACTGAAGAAAGCTCTGTCCGGAGATTCGGAAGAAGGGTCGTGGGTTTTG 1443
Query 1447 CCTTCTGGAGTACAAAGCCGAGCGGTTTCGCCAAGAGACACGTATGCAGCGTTGAGGAGA 1506
| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 1444 TCGTCTGGAGTACAAAGCCGAACGGTTTCCCCAAGAGACACGTATGCATCGTTGAGGAGA 1503
Query 1507 GAAAACAGAGAGCTGAAGCTGGAAATATCAAGGATGAGAGTGAGAGTGAGCGAGTTAGAG 1566
||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||
Sbjct 1504 GAAAACAGAGAGCTGAAGCTGGAGATATCGAGGATGAGAATGAGGGTGAGCGAGTTAGAG 1563
Query 1567 AAAGAACATAATTTGATGAAACATGAGATGATGGAGAAATCCGGTAATAATGGTGGAACG 1626
||| |||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 1564 AAACAACATAATTTGATGAAACATGAGATGATGGAGAAGTCCGGTAGTAATAGTGGAACC 1623
Query 1627 TTCTTGACGTCACTGTCCAAAGGAATTGGAAGGATCGCGACATTCGGTGGAGAAACCCGG 1686
|||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||| ||||
Sbjct 1624 TTCTTGACGTCATTGTCCAAAGGAATCGGAAGGATCGCGATATTCGGCGGAGAAAACCGG 1683
Query 1687 CAAAAGGTGAACCGGAAATCAAGGTCGGTGTCGGAGAGAAAATCAA 1732
|||||||| || || |||||||||||||| |||||||||||| |||
Sbjct 1684 CAAAAGGTTAATCGAAAATCAAGGTCGGTATCGGAGAGAAAAACAA 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5