BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08680.1
Length=2536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478170 jgi|Araly1|478170|fgenesh2_kg.3__871__AT3G08680.2 3302 0.0
> Ahg478170 jgi|Araly1|478170|fgenesh2_kg.3__871__AT3G08680.2
Length=2545
Score = 3302 bits (1788), Expect = 0.0
Identities = 2087/2226 (94%), Gaps = 42/2226 (2%)
Strand=Plus/Plus
Query 264 CTCACCAATG-TCCTGAACCATTCTCCTCTGAATCAACCTCTAAGTTGCTGTTGAATGAG 322
|||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 355 CTCACCAATGCCCCT-CACCATTCTCCTCTGAACCAAGCTCTAAGTTGCTGTTGAATGAG 413
Query 323 AAAGCTTTGATGTGAGC-GAGCCTGAGAGTGTAACAAAGGACTGATGATGAAGATTATTG 381
||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||
Sbjct 414 AAAGCTTTGATGTGA-CTGAACCTGAGAGTGTAACAAAGGACTCATGATGAAGATTATTG 472
Query 382 CGGCGTTTCTCTTCCTCTTGGTCACGA-CTTTTGTTTCCCGTTGTTTGTCTGCAGACATA 440
||||||| ||||||||||||||| | | ||||||||||||||||||| ||||||||||||
Sbjct 473 CGGCGTTCCTCTTCCTCTTGGTCTC-ACCTTTTGTTTCCCGTTGTTTCTCTGCAGACATA 531
Query 441 GAATCGGACAAGCAAGCACTGCTTGAGTTTGCATCTCTTGTTCCTCACAGTCGCAAACTC 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAATCGGACAAGCAAGCACTGCTTGAGTTTGCATCTCTTGTTCCTCACAGTCGCAAACTC 591
Query 501 AACTGGAACTCCACTATTCCAATCTGTGCCTCTTGGACTGGTATCACCTGCTCCAAGAAC 560
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 592 AACTGGAACTCCACTATTCCAATCTGTGGTTCTTGGACCGGTATCACCTGCTCCAAGAAC 651
Query 561 AACGCCCGTGTAACCGCACTCCGTTTGCCTGGATCTGGACTTTATGGACCTTTACCAGAG 620
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 652 AACGCCCGTGTAACCGCACTTCGTTTGCCTGGATCTGGACTTTATGGACCTTTACCAGAG 711
Query 621 AAAACATTTGAGAAGCTTGATGCCCTCAGGATCATTAGCCTTAGATCCAACCACCTTCAA 680
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 712 AAAACATTTGAGAAGCTTGATGCCCTCAGGATTATTAGCCTTAGATCCAACAACCTTCAA 771
Query 681 GGGAACATTCCATCTGTCATTCTTTCACTTCCTTTTATCCGATCACTATACTTTCATGAA 740
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 772 GGGAACATTCCATCTGTCATTCTTTCTCTTCCTTTTATCCGATCACTCTATTTTCACGAC 831
Query 741 AACAACTTTTCTGGTACTATCCCTCCCGTCCTTTCTCATCGCCTCGTTAATCTTGATCTC 800
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 832 AACAACTTTTCTGGTACTATCCCTCCCGTTCTTTCTCGTCGCCTTGTTAATCTTGATCTC 891
Query 801 TCCGCCAACTCGCTCTCGGGAAACATTCCCACGAGTCTACAAAACCTTACCCAGCTCACT 860
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 892 TCCGCCAACTCCCTCTCTGGAAACATTCCCTCGAGTCTACAAAACCTTACCCAGCTCACT 951
Query 861 GATCTCAGCCTGCAAAACAATTCTCTTAGTGGTCCAATTCCTAACCTCCCTCCTCGCCTT 920
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 952 GATCTCAGCCTGCAAAACAATTCTCTTAGTGGGCCAATTCCTAACCTCCCTCCTCGCCTT 1011
Query 921 AAATACTTGAATTTGAGCTTCAATAACCTTAACGGGTCAGTTCCATCTTCTGTCAAGTCC 980
||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct 1012 AAATACTTGAACTTGAGCTTCAATAATCTTACCGGGTCAGTTCCATCTTCTATCAAGTCC 1071
Query 981 TTCCCAGCATCCTCATTTCAAGGTAATAGCCTTCTATGCGGTGCTCCTCTGACTCCATGC 1040
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 1072 TTCCCAGCATCCTCATTTCAAGGTAATAGCCTTTTGTGCGGTGCTCCTCTAACTCCATGC 1131
Query 1041 CCAGAAAACACCACTGCACCATCTCCTTCACCGACAACACCAACAGAAGGTCCTGGTACA 1100
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TCAGAGAACACCACTGCACCATCTCCTTCACCGACAACACCAACAGAAGGTCCTGGTACA 1191
Query 1101 ACCAATATAGGTCGTGGTACCGCCAAAAAAGTTCTCTCCACTGGTGCTATTGTGGGCATT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ACCAATATAGGTCGTGGTACCGCCAAAAAAGTTCTCTCCACTGGTGCTATTGTGGGCATT 1251
Query 1161 GCAGTTGGAGGTTCGGTTCTGTTGTTTATCATTCTTGCCATCATAACCCTTTGCTGTGCC 1220
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCAGTTGGAGGTTCGATTCTGTTGTTTATCATTCTTGCCATCATAACCCTTTGCTGTGCC 1311
Query 1221 AAGAAAAGAGATGGCGGGCAAGATAGCACCGCAGTGCCAAAAGCTAAACCCGGGAGGAGT 1280
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAGAAAAGAGATGGCGGGCAAGACAGCACCGCAGTGCCAAAAGCTAAACCCGGGAGGAGT 1371
Query 1281 GACAACAAGGCTGAGGAGTTTGGGAGTGGGGTGCAAGAGGCGGAGAAGAACAAGCTGGTC 1340
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1372 GACAACAAGGCCGAGGAGTTTGGGAGTGGGGTGCAAGAGGCAGAGAAGAACAAGCTGGTC 1431
Query 1341 TTCTTTGAAGGAAGTTCATATAACTTTGATCTTGAGGACTTGCTCAGAGCCTCGGCTGAA 1400
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1432 TTCTTTGAAGGAAGTTCATATAACTTCGATCTTGAGGACTTACTCAGAGCCTCGGCTGAA 1491
Query 1401 GTTTTAGGGAAAGGAAGCTATGGCACAACGTATAAGGCCATCTTAGAGGAAGGAACCACG 1460
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GTTTTAGGGAAAGGAAGCTACGGCACAACGTATAAGGCCATCTTAGAGGAAGGAACCACA 1551
Query 1461 GTGGTGGTGAAGAGACTGAAAGAAGTAGCAGCTGGGAAACGGGAGTTCGAGCAGCAGATG 1520
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1552 GTGGTGGTGAAGAGGCTGAAAGAAGTAGCAGCTGGGAAACGGGAGTTCGAACAGCAGATG 1611
Query 1521 GAAGCCGTGGGAAGGATCAGTCCACACGTGAATGTAGCTCCTCTCCGTGCCTATTACTTT 1580
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1612 GAAGCCGTGGGAAGGATCAGTCCACACGTGAACGTAGCTCCTCTCCGTGCTTATTACTTC 1671
Query 1581 TCAAAAGACGAGAAGCTACTCGTGTATGATTACTACCAAGGGGGCAATTTCTCCATGCTG 1640
|| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1672 TCGAAAGACGAAAAATTACTCGTGTATGATTACTACCAAGGGGGAAATTTCTCCATGCTG 1731
Query 1641 CTTCATGGAAACAATGAGGGAGGAAGAGCAGCGTTGGACTGGGAAACAAGGTTAAGGATC 1700
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1732 CTTCATGGAAACAACGAGGGAGGAAGAGCAGCGTTAGACTGGGAAACAAGGTTAAGGATC 1791
Query 1701 TGTTTGGAAGCTGCGAGGGGAATTTCTCACATCCATTCTGCATCTGGTGCTAAACTCCTC 1760
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 TGTCTGGAAGCCGCTAGGGGAATTTCTCACATCCATTCTGCATCTGGTGCTAAACTCCTC 1851
Query 1761 CATGGAAACATCAAATCACCAAATGTCCTCTTAACCCAAGAACTTCATGTCTGTGTCTCT 1820
||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 1852 CATGGAAACATAAAATCACCAAATGTCCTCTTAACCCAAGAGCTCCAAGTCTGTGTTTCT 1911
Query 1821 GATTTCGGTATAGCTCCATTGATGAGCCATCACACCTTGATCCCATCAAGAAGCTTAGGT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GATTTCGGTATAGCTCCATTGATGAGCCATCACACCTTGATCCCATCAAGAAGCTTAGGT 1971
Query 1881 TACAGAGCACCCGAGGCCATAGAAACACGGAAACATACCCAGAAGTCCGACGTATACAGC 1940
|||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct 1972 TACAGAGCACCCGAGGCCATAGAAACCCGTAAACATACCCAGAAATCCGATGTATACAGC 2031
Query 1941 TTTGGTGTACTGTTGCTAGAAATGCTGACTGGGAAAGCAGCAGGGAAGACTACTGGGCAT 2000
||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 2032 TTTGGTGTACTGTTGCTAGAAATGCTGACAGGGAAAGCAGCCGGGAAGACGACAGGGCAT 2091
Query 2001 GAAGAAGTGGTGGATCTGCCAAAGTGGGTGCAATCAGTGGTGAGAGAGGAGTGGACTGGA 2060
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2092 GAAGAAGTGGTGGATCTGCCAAAGTGGGTGCAGTCAGTGGTGAGAGAGGAGTGGACTGGA 2151
Query 2061 GAAGTGTTTGACGTAGAGCTGATCAAGCAGCAACACAACGTAGAGGAAGAAATGGTGCAG 2120
|||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 2152 GAAGTGTTTGACGTCGAGCTGATCAAGCAGCAGCACAATGTTGAGGAAGAGATGGTGCAG 2211
Query 2121 ATGTTGCAGATAGCAATGGCATGTGTGTCTAAGCATCCAGATTCTAGGCCTTCAATGGAG 2180
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 2212 ATGTTGCAGATAGCAATGGCATGTGTGTCTAAGCATCCAGATTCTAGGCCTACGATGGAG 2271
Query 2181 GAAGTGGTTAACATGATGGAGGAGATTCGACCTTCAGGGTCCGGTCCTGGTTCTGGTAAC 2240
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2272 GAAGTGGTAAACATGATGGAGGAGATTCGACCTTCAGGGTCTGGTCCTGGTTCTGGTAAC 2331
Query 2241 AGAGCCTCCTCGCCGGAGATGATCAGAAGCTCTGATAGCCCGGTTTAGATTGGttttaaa 2300
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 2332 AGAGCCTCCTCGCCCGAAATGATCAGAAGCTCTGATAGCCCCGTTTAGATTGGTTTT--- 2388
Query 2301 ttctctttctctcattctcaaatcattatttatttttgcttttccttcttcttcttc-t- 2358
|| |||||| | || ||| | |||||||||||||||||||| |
Sbjct 2389 TT-----------ATTCTC---T--TT-TTT-T----GCTTTTCCTTCTTCTTCTTCATA 2426
Query 2359 tcaTAAACCGTTTATTTTAGTTCTCTATGTCTGACTGCATAATTTATT-CCAATCAATAT 2417
| ||||||||||| | |||| | ||||||||||||||||||| || |||| || |
Sbjct 2427 TAATAAACCGTTTCCT--AGTTAT--ATGTCTGACTGCATAATTTTTTTCCAAACA-T-- 2479
Query 2418 CTGGAATTGTAGTGTAATTGAAAC-CCTCACCATGAATGGTTGTAGTTCTTAGATTGGTT 2476
| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2480 CAGGAAAAGTAGTGTAATTGAAAATCCTCACCATGAATGGTTGTAATTCTTAGATTGGTT 2539
Query 2477 ATAAGT 2482
|||||
Sbjct 2540 TTAAGT 2545
Score = 272 bits (147), Expect = 8e-72
Identities = 236/273 (86%), Gaps = 29/273 (11%)
Strand=Plus/Plus
Query 1 AGAGAAGA-AGAAGAGAGATTGGAATCTGAAACTGTAACATCGAGATTTACGTTTCTCCG 59
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 27 AGAGAAGAGAGAAGAGAGATTGGAATCTGAAACTGAAACATCGAGATTTACGTTTCTCCG 86
Query 60 TCGGCGTCACGCCGAAGCTTCCATAC-----T--CCAGAAACCCCAAAACGCTTATTTCT 112
| |||||||||||||||||||||||| | ||||||| ||| |||| | |||||
Sbjct 87 TTGGCGTCACGCCGAAGCTTCCATACTTTTTTCACCAGAAA-CCCGCAACG--T-TTTCT 142
Query 113 CAAAAATCTCCACTCTCTCTCTTCTGAATCTTCAATCACTTGGGGTTGTGTCACTGAATC 172
| ||| ||| ||| | || ||| |||||||||||||||||||||||||||
Sbjct 143 C-----TCT----TCTGACTC-T-TG---CTTGAATCACTTGGGGTTGTGTCACTGAATC 188
Query 173 TGCATCAATGGCGATTCCAGATTCCTCACTCTTTTCTGCTTTTGACTTTAGCTC-T-A-G 229
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 189 TGCATCAATGGCGATTCCAGATTCCTCACTCTTTTCTGCTTTTGCCTTTAGCTCCTCAAG 248
Query 230 CTTCTTCTTCACGAAATGCCGTTGTTGTTAAAA 262
|||||||||||||||||||||||||||||||||
Sbjct 249 CTTCTTCTTCACGAAATGCCGTTGTTGTTAAAA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95606514950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5