BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G08710.1

Length=894
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928521 jgi|Araly1|928521|scaffold_300978.1                        765    0.0  


> Ahg928521 jgi|Araly1|928521|scaffold_300978.1
Length=477

 Score =  765 bits (414),  Expect = 0.0
 Identities = 458/479 (96%), Gaps = 4/479 (1%)
 Strand=Plus/Plus

Query  257  TTCGAATTTCCAGGACATTCAAATGGGTAGCTGCGTCTCTAAGGGTAAAGGAGACGATGA  316
            ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  1    TTCGAATTTCCAGAACATTCAAATGGGGAGCTGCGTCTCTAAGGGCAAAGGAGACGATGA  60

Query  317  TTCCGTCCATAACGTCGAGTTTTCCGGTGGCAATGTTCATCTGATTACAACAAAAGAGAG  376
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCCATCCATAACGTCGAGTTTTCCGGTGGCAATGTTCATCTGATTACAACAAAAGAGAG  120

Query  377  TTGGGATGACAAATTAGCTGAAGCTGATCGTGATGGCAAAATCGTGGTTGCAAACTTCAG  436
            ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  TTGGGATGAGAAATTAGCTGAAGCTGGTCGTGATGGCAAAATCGTGGTTGCAAACTTCAG  180

Query  437  TGCGACATGGTGTGGTCCGTGTAAAATTGTGGCACCATTTTTCATCGAGCTCTCAGAGAA  496
             ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct  181  CGCGACATGGTGCGGTCCGTGTAAGATTGTGGCACCATATTTCATCGAGCTCTCAGAGAA  240

Query  497  ACATTCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCGATTTTAGCTCATC  556
            |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACACCCTTCTCTTATGTTCCTTCTTGTAGATGTTGATGAACTCAGCGATTTTAGCTCATC  300

Query  557  ATGGGACATTAAGGCGACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAA  616
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATGGGACATAAAGGCAACACCAACCTTCTTCTTCCTAAAGAATGGACAACAAATAGGCAA  360

Query  617  GCTTGTTGGAGCAAACAAACCGGAGCTACAGAAGAAGGTTACTTCTATCATTGATTCTGT  676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GCTTGTTGGAGCAAACAAACCGGAGCTACAGAAGAAGGTTACTTCTATCATTGATTCTGT  420

Query  677  GCCTGAAAGTCCTCAACGGCCTTGACTCTTGACTCTCGCAGCCTTGTGTTCTGAGGTCT  735
            ||||||||||||||||||| |||  || | |||| |||||||||||| |||||||||||
Sbjct  421  GCCTGAAAGTCCTCAACGGTCTT--CT-T-GACTTTCGCAGCCTTGTCTTCTGAGGTCT  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33128814873


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5