BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08720.1
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478175 jgi|Araly1|478175|fgenesh2_kg.3__876__AT3G08720.1 2612 0.0
Ahg478176 jgi|Araly1|478176|fgenesh2_kg.3__877__AT3G08730.1 1419 0.0
> Ahg478175 jgi|Araly1|478175|fgenesh2_kg.3__876__AT3G08720.1
Length=1686
Score = 2612 bits (1414), Expect = 0.0
Identities = 1599/1689 (95%), Gaps = 10/1689 (1%)
Strand=Plus/Plus
Query 36 TCTCGTCTCCTTCTCGTCTCCTTCCTCAAGCATATTCTCTGCGCTTA-A--AGTACTTTG 92
|||||||||||||||||||||||||||||||||||||||| | ||| | || || |||
Sbjct 1 TCTCGTCTCCTTCTCGTCTCCTTCCTCAAGCATATTCTCT--G-TTAGAGCAGCACGTTG 57
Query 93 ATGGCATTGGGACACTTGTGCAGCATCCACTGTTTCCTTAAAATAGGGAAACAAGAAGAG 152
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 58 ATGGCATTGGGACACTTGTGCAGCATCCACTGTTTCCTTAATATAGGGAAACAAGAAGAG 117
Query 153 CTTCTTGTCCTAGATATTGGTTTGCCTATTCCCAGTTTCTTCCTCA-TTAACTTTATTGG 211
|||||| |||| | | |||||||||||||||||||||||||||||| |||||||| ||
Sbjct 118 CTTCTTCTCCTTGGTTTTGGTTTGCCTATTCCCAGTTTCTTCCTCATTTAACTTTTTTCT 177
Query 212 TAGCAGAGCCTCATCCATCTGGTGAACTTGTGAAGCTTCCTCTGTGATTCTTTTGGCGAT 271
||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 178 TAGGAGACCCTCATCCATCTGGTGAACTTGTGAAGCTTTCTCTGTGCTTCTTTTGGCGAT 237
Query 272 TGGTTAGAAATATGGTTTCTTCTCAGTGTTCTGTTGCAAACAAAAACCAGACTGGGAAGC 331
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 TGGTTAGAGATATGGTTTCTTCTCAGTGTCCTGTTGCAAACAAAAACCAGACTGGGAAGC 297
Query 332 CGTTTCAGAAACATCTATCTTTATCCATCAGCCCTCCAAAATCTGTCTTGGGTGATAACC 391
||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 CGTTTCAGAAACAGCTATATTTATCCATCAGCCCTCCAAAATCTGTCTTGAATGATAACC 357
Query 392 TTGAGCTTCAATTCTCTGATGTCTTTGGACCAATGCCTGAAGCTAACTCTGAAGAGGCCT 451
|||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 358 TTGAGCTTGAATTCTCTGATGTGTTTGGTCCAATGCCTGAAGCTAACTCTGGGGAGGCCA 417
Query 452 GTGATGTTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCATTGGTTGGCC 511
||||||||| |||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 418 GTGATGTTGTTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCATTCGTTGGTGGGAC 477
Query 512 CGTCTTTGGTTGTTAGCCATTCTTTGAAGATGAACAAGCTCACTTTACGAGAAACTGAGG 571
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 478 CGTCTTTGGTTGTTAGCCATTCTTTGAAGTTGAACAAGCTCACTTTACGAGAGACTGAGG 537
Query 572 ACTCAGTTGACTTGGTGGAGTGTGTTGAAGGTGAATCGATAAAAGAGAACGATGAATTCT 631
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 538 ACTCAGTTGACTTGGTGGAGTGTGTTGAAGGTGAATCTATTAAAGAAAACGATGAATTCT 597
Query 632 CTGGTAATGATGACACTGACAGTGAGAAATCTCCAGAGGAGGTCTCAGGTGTAGTAGGCA 691
||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 598 CTGGTAATGATGACACTGACAGTGACAAAGCTCTAGAGGAGGTCTCAGGTGTAGTAGGCA 657
Query 692 TTGAGGACTTTGAGGTATTGAAGGTTGTGGGACAAGGTGCATTTGGAAAAGTGTACCAGG 751
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 658 TTGAGGACTTTGAGGTATTGAAGGTTGTGGGGCAAGGTGCATTTGGGAAAGTGTACCAGG 717
Query 752 TGAGGAAAAAAGACACGTCTGAGATATACGCGATGAAGGTCATGAGAAAAGATAAAATTG 811
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 718 TGAGGAAAAAAGACACTTCTGAGATATACGCGATGAAGGTTATGAGAAAAGACAAGATTG 777
Query 812 TTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACCAAAATCGATC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACCAAAATCGATC 837
Query 872 ATCCTTTCATTGTGCAACTTAAATACTCTTTTCAGACCAAATACAGATTGTATCTTGTTC 931
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 838 ATCCTTTCATTGTCCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTGTATCTTGTGC 897
Query 932 TTGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGCTTTTCAGGG 991
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 TCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGCTTTTCAGAG 957
Query 992 AGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATCTCCATGAGA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATCTCCATGAGA 1017
Query 1052 AAGGCATAATGCATAGAGATCTTAAACCTGAAAACATACTCATGGACGTAGATGGCCATG 1111
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGGCATAATGCATAGAGATCTGAAACCTGAAAACATACTCATGGACGTAGATGGCCATG 1077
Query 1112 TGATGTTAACTGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGATCAAACTCCA 1171
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1078 TGATGTTAACTGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGATCAAACTCCA 1137
Query 1172 TGTGTGGGACTACGGAGTATATGGCCCCTGAGATTGTTCGTGGAAAAGGACATGATAAGG 1231
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1138 TGTGTGGGACTACGGAGTATATGGCCCCTGAAATTATTCGTGGAAAAGGACATGATAAGG 1197
Query 1232 CTGCCGACTGGTGGAGTGTAGGAATCCTTCTGTATGAGATGCTCACTGGAAAGCCGCCGT 1291
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTGCCGACTGGTGGAGCGTAGGGATCCTTCTGTATGAGATGCTCACTGGAAAGCCGCCGT 1257
Query 1292 TTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTTAAGGACAAGATCAAGCTTCCAC 1351
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1258 TTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTAAAGGACAAGATCAAGCTTCCAC 1317
Query 1352 AGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAAGAGCCAGAAA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAAGAGCCAGAAA 1377
Query 1412 GGAGACTGGGAAGTGGACCGAGCGGAGCAGAGGAGATaaaaaaaCACAAATGGTTCAAGG 1471
||||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||
Sbjct 1378 GGAGACTGGGAAGTGGACCGAGCGGAGCAGATGAAATAAAACAGCACAAATGGTTCAAGG 1437
Query 1472 CGATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAACCAAGTTTCAAGCCGGCGGTTT 1531
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1438 TGATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAACCAAGTTTCAAGCCAGCAGTTT 1497
Query 1532 CGGGAAGACAATGCATAGCTAATTTTGACAAGTGTTGGACTGACATGTCTGTTTTGGATT 1591
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 1498 CGGGAAGACAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGTCTGTGTTGGATT 1557
Query 1592 CTCCAGCAAGTAGTCCCAACTCTGATGCTAAGGCGAACCCTTTTACAAACTTCACATACG 1651
|||||||||| |||||||| |||||| ||||||| ||||||||| | |||||||||||||
Sbjct 1558 CTCCAGCAAGCAGTCCCAATTCTGATCCTAAGGCCAACCCTTTTTCTAACTTCACATACG 1617
Query 1652 TCAGGCCTCCTCATTCATTCCTTCATCGGACCACATCCAACTTGTAG-A--TGAACTATA 1708
|||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||
Sbjct 1618 TCAGGCCTCCTCCCTCATTCCTTCACCGAACCACATCCAACTTGTAGTAGATGAACTATA 1677
Query 1709 ATATGTTAC 1717
|||| ||||
Sbjct 1678 ATATATTAC 1686
> Ahg478176 jgi|Araly1|478176|fgenesh2_kg.3__877__AT3G08730.1
Length=1758
Score = 1419 bits (768), Expect = 0.0
Identities = 1187/1381 (86%), Gaps = 61/1381 (4%)
Strand=Plus/Plus
Query 337 CAGAAACATCTATCTTTATCCATCAGCCCTCCAAAATCTGTCTTGGGTGATAACCTTGAG 396
|||||||| | || | |||| ||||||||| |||| ||| ||||| ||| | |||||
Sbjct 380 CAGAAACAGCAATATCTATCTATCAGCCCTTCAAACTCTTTCTTGAAAGATGATGTTGAG 439
Query 397 CTTCAATTCTCTGATGTCTTTGGACCAATGCCTGAAGCTAACTCTGAAGAGGCCTGTGAT 456
||| ||||||||||||| ||||| | || | || | ||||||| ||| ||||
Sbjct 440 CTTGAATTCTCTGATGTGTTTGG-----T-CC---A-CT--CCCTGAAGAAGCCAATGAT 487
Query 457 GTTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCATTGGTTGGCCCGTCT 516
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 488 ATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTTGGCCCGTGT 547
Query 517 TTGGTTGTTAGCCATTCTTTGAAGATGAACAAGCTCACTTTACGAGAAACTGAGGACTCA 576
| | | | ||| |||||||||||| ||| ||||||||| |||||||| ||||||||||||
Sbjct 548 TCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACGAGAGACTGAGGACTCA 607
Query 577 GTTGACTTGGTGGAGTGTGTTGAAGGTGAATCGATAAAAGAGAACGATGAATTCTCTGGT 636
||||||||||||||||| | ||||||||||| ||||||| || ||||| |||||||||
Sbjct 608 ATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAGTTCTCTGGT 667
Query 637 AATGATGACACTGACAGTGAGAAATCTCCAGAGG-AGGTCT-----------CAGGTGTA 684
||||| |||| ||||| ||||||| || ||||| || ||| ||||||||
Sbjct 668 AATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTTTCAGGTGTA 727
Query 685 GTAGGCATTGAGGACTTTGAGGT-ATTGAAGGTTGT-GGGACAAGGTGCATTTGGAAAAG 742
|||||||| || || |||||||| || ||| ||||| |||| ||||||| ||||| ||||
Sbjct 728 GTAGGCATAGATGATTTTGAGGTTAT-GAAAGTTGTTGGGA-AAGGTGCGTTTGGGAAAG 785
Query 743 TGTACCAGGTGAGGAAAAAAGACACGTCTGAGATATACGCGATGAAGGTCATGAGAAAAG 802
| ||||||||||||||||| || || |||||||||||||||||||| | | | |
Sbjct 786 TCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCGATGAA----A--A-A---G 835
Query 803 ATAAAATTGTTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACCA 862
| | || | ||| | | |||| || | ||| || | || ||||||| || |
Sbjct 836 A-ACCAT-GCTGA-AT-A--CATGA--AAG-C-TGA--GC-G--CG--ATATTCTTACAA 878
Query 863 AAATCGATCATCCTTTCATTGTGCAACTTAAATACTCTTTTCAGACCAAATACAGATTGT 922
|||| ||||| || |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 879 AAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTGT 938
Query 923 ATCTTGTTCTTGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGC 982
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 ATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGGC 998
Query 983 TTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATC 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCATC 1058
Query 1043 TCCATGAGAAAGGCATAATGCATAGAGATCTTAAACCTGAAAACATACTCATGGACGTAG 1102
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 1059 TCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCCGAAAACATACTCATGGACACAG 1118
Query 1103 ATGGCCATGTGATGTTAACTGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGAT 1162
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATGGCCACGTGATGTTAACAGATTTTGGTTTAGCAAAAGAATTTGAAGAAAACACAAGAT 1178
Query 1163 CAAACTCCATGTGTGGGACTACGGAGTATATGGCCCCTGAGATTGTTCGTGGAAAAGGAC 1222
||||||||||||| || ||||| ||||||||||| ||||| || ||||| ||||||||||
Sbjct 1179 CAAACTCCATGTGCGGAACTACAGAGTATATGGCACCTGAAATCGTTCGAGGAAAAGGAC 1238
Query 1223 ATGATAAGGCTGCCGACTGGTGGAGTGTAGGAATCCTTCTGTATGAGATGCTCACTGGAA 1282
||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 1239 ATGATAAAGCTGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTCACAGGAA 1298
Query 1283 AGCCGCCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTTAAGGACAAGATCA 1342
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1299 AGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAACAGAAAATCGTGAAGGACAAGATCA 1358
Query 1343 AGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAAG 1402
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1359 AGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCGATGCTGAAAGGGCTGCTGCAAAAAG 1418
Query 1403 AGCCAGAAAGGAGACTGGGAAGTGGACCGAGCGGAGCAGAGGAGATaaaaaaaCACAAAT 1462
||||||| ||| | || |||||||||||||||||||||||||| |||||| | || ||||
Sbjct 1419 AGCCAGAGAGGCGTCTTGGAAGTGGACCGAGCGGAGCAGAGGAAATAAAACAGCATAAAT 1478
Query 1463 GGTTCAAGGCGA-TAAACTGGAAGAAGCTGGAGGCTAGAGAAGT-ACAACCAAGTTTCAA 1520
||||||||| || |||||||||||||||||||||| |||||||| | |||||||| ||
Sbjct 1479 GGTTCAAGG-GAATAAACTGGAAGAAGCTGGAGGCCAGAGAAGTGATG-CCAAGTTTTAA 1536
Query 1521 GCCGGCGGTTTCGGGAAGACAATGCATAGCTAATTTTGACAAGTGTTGGACTGACATGTC 1580
||| | || || ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1537 GCCTGAAGTATCAGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGTC 1596
Query 1581 TGTTTTGGATTCTCCAGCAAGTAGTCCCAACTCTGATGCTAAGGCGAACCCTTTTACAAA 1640
||||||||||||||| || || ||||||| || ||| ||||||| ||||||||||| ||
Sbjct 1597 TGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTTACCAA 1656
Query 1641 CTTCACATACGTCAGGCCTCCTCATTCATTCCTTCATCGGACCACATCCAACTT-GTAGA 1699
||||||||||||||||||||||||||||||||||| | | ||||| | | ||| |||||
Sbjct 1657 TTTCACATACGTCAGGCCTCCTCATTCATTCCTTCAACAGTCCACAACGA-CTTCGTAGA 1715
Query 1700 T 1700
|
Sbjct 1716 T 1716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5