BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08730.1
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478176 jgi|Araly1|478176|fgenesh2_kg.3__877__AT3G08730.1 2621 0.0
Ahg478175 jgi|Araly1|478175|fgenesh2_kg.3__876__AT3G08720.1 1661 0.0
> Ahg478176 jgi|Araly1|478176|fgenesh2_kg.3__877__AT3G08730.1
Length=1758
Score = 2621 bits (1419), Expect = 0.0
Identities = 1654/1760 (94%), Gaps = 45/1760 (3%)
Strand=Plus/Plus
Query 4 ATACGGCCACGTGTATGAACCCCTGGATCTGCGATGCTGCTCTTAAATTCTCCTCTCGTC 63
|||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct 1 ATACGGCCACGTGTCTGAATCCCTGGATCTGCGATGCTTTTCTTAAATTCTTCTCTCGTC 60
Query 64 CTCATTTCCATCTTCGTCTCCTCCCTCAGCCATCCCCTCTGAGCTTATAAAACCTTCATG 123
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATTTCCATCTTCGTCTCTTTCCTCAGCCATCCCCTCTGAGCTTATAAAACCTTCATG 120
Query 124 GCATTTGCGCACTTCTGCAGCATCCACTGTTTCCTTAAAATCGGGAAACAACAAGAGCTT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCATTTGCGCACTTCTGCAGCATCCACTGTTTCCTTAAAATCGGGAAACAACAAGAGCTT 180
Query 184 CTTCTCCTTGTTATTGGATTGCCTTTTG----------CCAG--C--C-TTTGTTTTAGT 228
|||||||| ||||||||||||||||||| |||| | | ||||||||||
Sbjct 181 CTTCTCCTCGTTATTGGATTGCCTTTTGCCAACATTTTCCAGATCAGCACTTGTTTTAGT 240
Query 229 CAGTTTTCTCCTCATTAACTTCTGTCGGTACAGAATCTCTCTCCAGGCTGGTGAACT-CT 287
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | | ||
Sbjct 241 CAGTTTTCTCCTCATTAACTTCTGTCGGTACAGAATCCCTCACCAGGCTGGTGGA-TACT 299
Query 288 TGCAGCTTTCTCAGTGATTCTGTATCGATTTTTCCCGTGTAAATTATGGTTTCCTCTCAG 347
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 300 TGAAGCTTTCTCAGTGATTCTGTATCGATTTTT-CGGTGTAAATTATGGTTTCCTCTCAG 358
Query 348 CGTCCTGTCCCCAACAAAATCCAGAAACAGCAATATCTATCCATCAGCCCTTCAAATTCT 407
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 359 CGTCCTGTCCCCAACAAAATCCAGAAACAGCAATATCTATCTATCAGCCCTTCAAACTCT 418
Query 408 GTCTTGAAAGATGATGTTGAACTTGAGTTCTCTGATGTGTTTGGTCCACTCCCCGAAGAG 467
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 419 TTCTTGAAAGATGATGTTGAGCTTGAATTCTCTGATGTGTTTGGTCCACTCCCTGAAGAA 478
Query 468 GCCAATGATATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCCAATGATATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTT 538
Query 528 GGCCCGTGTTCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACTAGAGACT 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 GGCCCGTGTTCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACGAGAGACT 598
Query 588 GAGGACTCAATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAT 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGGACTCAATTGACTTGGTGGAGTGTCTCGAAGGTGAATCTTTAAAAGAAAATGATGAG 658
Query 648 TTCTCTGGTAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTC 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCTCTGGTAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTT 718
Query 708 TCAGGTGTAGTAGGCATAGATGATTTTGAGGTTATGAAGGTTGTTGGGAAAGGTGCGTTT 767
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 TCAGGTGTAGTAGGCATAGATGATTTTGAGGTTATGAAAGTTGTTGGGAAAGGTGCGTTT 778
Query 768 GGGAAAGTCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCTATGAAAGTCATG 827
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 779 GGGAAAGTCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCGATGAAA---A-- 833
Query 828 AGGAAAGATCACATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGCGCGATATT 887
|| || | ||| || | | | | ||| || | | ||||||||||||||
Sbjct 834 AG-AA----C-CATGCTG-A-AT-A-C-ATG---AA-A---G----CTGAGCGCGATATT 871
Query 888 CTTACAAAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTAC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTTACAAAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTAC 931
Query 948 AGGCTGTATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAACTCTATCAC 1007
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 932 AGGCTGTATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCAC 991
Query 1008 CAAGGGCTTTTCAGAGAGGACTTGGCTCGAGTGTACACTGCAGAAATCGTCTCTGCAGTT 1067
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 992 CAAGGGCTTTTCAGGGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTT 1051
Query 1068 TCCCATCTCCATGAGAAAGGCATAATGCACAGAGATCTGAAACCCGAAAACATACTCATG 1127
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1052 TCCCATCTCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCCGAAAACATACTCATG 1111
Query 1128 GATACAGATGGCCACGTGATGCTAACAGATTTTGGTTTAGCAAAGGAATTTGAAGAAAAC 1187
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1112 GACACAGATGGCCACGTGATGTTAACAGATTTTGGTTTAGCAAAAGAATTTGAAGAAAAC 1171
Query 1188 ACAAGATCAAACTCCATGTGCGGAACTACGGAGTATATGGCACCTGAAATTGTTCGAGGA 1247
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1172 ACAAGATCAAACTCCATGTGCGGAACTACAGAGTATATGGCACCTGAAATCGTTCGAGGA 1231
Query 1248 AAAGGACATGATAAAGCAGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTC 1307
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AAAGGACATGATAAAGCTGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTC 1291
Query 1308 ACAGGAAAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATTGTGAAGGAC 1367
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1292 ACAGGAAAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAACAGAAAATCGTGAAGGAC 1351
Query 1368 AAGATCAAGCTTCCGCAGTTTCTGTCTAATGAAGCTCATGCAATACTGAAAGGGCTGCTG 1427
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1352 AAGATCAAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCGATGCTGAAAGGGCTGCTG 1411
Query 1428 CAAAAAGAGCCAGAAAGGCGACTTGGAAGTGGACTGAGCGGAGCAGAGGAGATAAAACAG 1487
|||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 1412 CAAAAAGAGCCAGAGAGGCGTCTTGGAAGTGGACCGAGCGGAGCAGAGGAAATAAAACAG 1471
Query 1488 CACAAATGGTTCAAGGGAATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTGATGCCAAGT 1547
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1472 CATAAATGGTTCAAGGGAATAAACTGGAAGAAGCTGGAGGCCAGAGAAGTGATGCCAAGT 1531
Query 1548 TTCAAGCCGGAAGTATCGGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAC 1607
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTTAAGCCTGAAGTATCAGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGAA 1591
Query 1608 ATGTCTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTT 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 ATGTCTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTT 1651
Query 1668 ACCAATTTCACTTACGTCAGGCCTCCTCCTTCATTCCTTCACCAGTCCACAACTACTTTG 1727
||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||| |
Sbjct 1652 ACCAATTTCACATACGTCAGGCCTCCTCATTCATTCCTTCAACAGTCCACAACGACTTCG 1711
Query 1728 TAGATTTACTATATTTTTAT 1747
||||||| ||||||| ||||
Sbjct 1712 TAGATTTGCTATATTGTTAT 1731
> Ahg478175 jgi|Araly1|478175|fgenesh2_kg.3__876__AT3G08720.1
Length=1686
Score = 1661 bits (899), Expect = 0.0
Identities = 1235/1393 (89%), Gaps = 39/1393 (3%)
Strand=Plus/Plus
Query 369 CAGAAACAGCAATATCTATCCATCAGCCCTTCAAATTCTGTCTTGAAAGATGATGTTGAA 428
|||||||||| |||| |||||||||||||| |||| ||||||||||| ||| | ||||
Sbjct 303 CAGAAACAGCTATATTTATCCATCAGCCCTCCAAAATCTGTCTTGAATGATAACCTTGAG 362
Query 429 CTTGAGTTCTCTGATGTGTTTGGTCC-A---CT----C---C-CCGAAGAGGCCAATGAT 476
||||| |||||||||||||||||||| | || | | | | ||||||| ||||
Sbjct 363 CTTGAATTCTCTGATGTGTTTGGTCCAATGCCTGAAGCTAACTCTGGGGAGGCCAGTGAT 422
Query 477 ATTGCTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCACTCCTTGGTTGGCCCGTGT 536
||| |||||||||||||||||||||||||||||||||||| || ||||| || |||| |
Sbjct 423 GTTGTTTACGACGAGCCTGCTGTTGTCTACAGTCGATCCCATTCGTTGGTGGGACCGTCT 482
Query 537 TCGCTCGATAGTCATTCTTTGAAGCTGACCAAGCTCACCTTACTAGAGACTGAGGACTCA 596
| | | | ||| |||||||||||| ||| ||||||||| |||| ||||||||||||||||
Sbjct 483 TTGGTTGTTAGCCATTCTTTGAAGTTGAACAAGCTCACTTTACGAGAGACTGAGGACTCA 542
Query 597 ATTGACTTGGTGGAGTGTCTCGAAGGTGAATCT-TTAAAAGAAAATGATGATTTCTCTGG 655
||||||||||||||||| | |||||||||||| || |||||||| ||||| ||||||||
Sbjct 543 GTTGACTTGGTGGAGTGTGTTGAAGGTGAATCTATT-AAAGAAAACGATGAATTCTCTGG 601
Query 656 TAATGACGACAGTGACAATGAGAAAGCTTTAGAGGGAGATCTGGTGAAAGTCTCAGGTGT 715
|||||| |||| ||||| ||| |||||| |||| | || | |||||||||||
Sbjct 602 TAATGATGACACTGACAGTGACAAAGCTCTAGA--G-GA------G---GTCTCAGGTGT 649
Query 716 AGTAGGCATAGATGATTTTGAGGTTA-TGAAGGTTGTTGGGAAAGGTGCGTTTGGGAAAG 774
||||||||| || || ||||||| || |||||||||| ||| ||||||| ||||||||||
Sbjct 650 AGTAGGCATTGAGGACTTTGAGG-TATTGAAGGTTGTGGGGCAAGGTGCATTTGGGAAAG 708
Query 775 TCTACCAGGTGAGGAAAAAGGAGACCTCTGAGATATACGCTATGAAAGTCATGAGGAAAG 834
| ||||||||||||||||| || || |||||||||||||| ||||| || ||||| ||||
Sbjct 709 TGTACCAGGTGAGGAAAAAAGACACTTCTGAGATATACGCGATGAAGGTTATGAGAAAAG 768
Query 835 ATC-ACATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGCGCGATATTCTTACA 893
| | | ||| | |||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 769 A-CAAGATTGTTGAGAAGAATCATGCTGAATACATGAAAGCCGAGCGCGATATTCTAACC 827
Query 894 AAAATTGATCACCCATTCATTGTTCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTG 953
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 828 AAAATCGATCATCCTTTCATTGTCCAACTTAAATACTCTTTTCAGACCAAGTACAGGCTG 887
Query 954 TATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAACTCTATCACCAAGGG 1013
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 888 TATCTTGTGCTCGACTTTATAAACGGAGGTCATCTTTTCTTCCAGCTCTATCACCAAGGG 947
Query 1014 CTTTTCAGAGAGGACTTGGCTCGAGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1073
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 948 CTTTTCAGAGAGGACTTGGCTCGTGTGTACACTGCAGAAATCGTCTCTGCAGTTTCCCAT 1007
Query 1074 CTCCATGAGAAAGGCATAATGCACAGAGATCTGAAACCCGAAAACATACTCATGGATACA 1133
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1008 CTCCATGAGAAAGGCATAATGCATAGAGATCTGAAACCTGAAAACATACTCATGGACGTA 1067
Query 1134 GATGGCCACGTGATGCTAACAGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGA 1193
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GATGGCCATGTGATGTTAACTGATTTTGGTTTAGCAAAGGAATTTGAAGAAAACACAAGA 1127
Query 1194 TCAAACTCCATGTGCGGAACTACGGAGTATATGGCACCTGAAATTGTTCGAGGAAAAGGA 1253
|||||||||||||| || ||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 1128 TCAAACTCCATGTGTGGGACTACGGAGTATATGGCCCCTGAAATTATTCGTGGAAAAGGA 1187
Query 1254 CATGATAAAGCAGCTGACTGGTGGAGCGTAGGGATTCTTCTGTATGAGATGCTCACAGGA 1313
|||||||| || || |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1188 CATGATAAGGCTGCCGACTGGTGGAGCGTAGGGATCCTTCTGTATGAGATGCTCACTGGA 1247
Query 1314 AAGCCACCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATTGTGAAGGACAAGATC 1373
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1248 AAGCCGCCGTTTCTCGGGAGCAAAGGAAAGATACAGCAGAAAATCGTAAAGGACAAGATC 1307
Query 1374 AAGCTTCCGCAGTTTCTGTCTAATGAAGCTCATGCAATACTGAAAGGGCTGCTGCAAAAA 1433
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1308 AAGCTTCCACAGTTTCTGTCTAATGAAGCTCATGCCTTGCTGAAAGGGCTGCTGCAAAAA 1367
Query 1434 GAGCCAGAAAGGCGACTTGGAAGTGGACTGAGCGGAGCAGAGGAGATAAAACAGCACAAA 1493
|||||||||||| |||| |||||||||| |||||||||||| || |||||||||||||||
Sbjct 1368 GAGCCAGAAAGGAGACTGGGAAGTGGACCGAGCGGAGCAGATGAAATAAAACAGCACAAA 1427
Query 1494 TGGTTCAAGG-GAATAAACTGGAAGAAGCTGGAGGCTAGAGAAGTG-ATGCCAAGTTTCA 1551
|||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1428 TGGTTCAAGGTGA-TAAACTGGAAGAAGCTGGAGGCTAGAGAAGTACAA-CCAAGTTTCA 1485
Query 1552 AGCCGGAAGTATCGGGAAGGCAATGCATAGCAAATTTTGACAAGTGTTGGACTGACATGT 1611
|||| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1486 AGCCAGCAGTTTCGGGAAGACAATGCATAGCAAATTTTGACAAGTGTTGGACTGAAATGT 1545
Query 1612 CTGTTTTGGATTCTCCGGCGAGCAGTCCCAGTTCGGATCCTAAGGCCAACCCTTTTACCA 1671
|||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| | |
Sbjct 1546 CTGTGTTGGATTCTCCAGCAAGCAGTCCCAATTCTGATCCTAAGGCCAACCCTTTTTCTA 1605
Query 1672 ATTTCACTTACGTCAGGCCTCCTCCTTCATTCCTTCACC-AGTCCACAACTA-CTT-T-G 1727
| ||||| ||||||||||||||||| ||||||||||||| | ||||| | | ||| | |
Sbjct 1606 ACTTCACATACGTCAGGCCTCCTCCCTCATTCCTTCACCGAA-CCACATCCAACTTGTAG 1664
Query 1728 TAGATTTACTATA 1740
||||| ||||||
Sbjct 1665 TAGATGAACTATA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70009870310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5