BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08740.1
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928524 jgi|Araly1|928524|scaffold_300981.1 1212 0.0
> Ahg928524 jgi|Araly1|928524|scaffold_300981.1
Length=748
Score = 1212 bits (656), Expect = 0.0
Identities = 720/751 (96%), Gaps = 3/751 (0%)
Strand=Plus/Plus
Query 66 CTCGCCGGCGGAAGAACAAAATGGCGGGAAGAGCGATTTTCTCTGTATCTTGTTCATCTA 125
||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |
Sbjct 1 CTCGCCGGCGGAAGAACAAAATGGCCGGAAGAGCGATTTTCTCTGTA-C--CATCATGTC 57
Query 126 CTCCTTCCTTGTGTATCCCTTATTCAACTGCTTCGTTTTCATCGATGAATCGACTGGCGC 185
||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 58 CTCCTTCCTTGTGCATCCCTTATTCAACTGCTTCTTTTTCATCGATGAATCGATTGGCGC 117
Query 186 TCCCCGCCGTCCGGATTTCTCCCCGAACCAACAGATTTCCCAGGATTCACTGCTCTATGT 245
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 118 TCCCCGCCGTGCGGATTTCTCCCCGAACCAACAGATTTCCCAGGATTCACTGCTCTTTGT 177
Query 246 CTGCTAACGACATCAAAGCGGGAACCAATATCGAAGTCGATGGTGCTCCTTGGCGTGTTC 305
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 178 CTGCTAACGACATCAAAGCCGGAACCAATATCGAAGTCGATGGTGCTCCTTGGCGTGTAC 237
Query 306 TTGAGTTTCTTCATGTTAAACCAGGAAAAGGTGCGGCATTTGTGAGAACTAAGATCAGGA 365
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 238 TTGAGTTTCTTCATGTCAAACCAGGAAAAGGTGCGGCATTTGTGAGGACCAAGATCAGGA 297
Query 366 ACTATGTGAATGGTAGCACAGTCGAGAGAACATTTCGTGCTGGAATTTCTGTTGAGGAAG 425
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTATGTAAATGGTAGCACCGTGGAGAGAACATTTCGTGCTGGAATTTCTGTTGAGGAAG 357
Query 426 CTAATATATATAAAGAAACCAAACAATTCACATACAAAGATGGGTCTCAGTTTGTTTTCA 485
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTAATATATACAAAGAAACCAAACAATTCACATACAAAGATGGGTCTCAGTTTGTTTTCA 417
Query 486 TGGATTTGACCACATACGAAGAAACACGTCTTAACGAATCTGATATGGGTGAGAAGACGA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGGATTTGACCACATACGAAGAAACACGTCTTAACGAATCTGATATGGGTGAGAAGACGA 477
Query 546 AATGGTTGAAAGAAGGAATGGATTGCATTTTGCTCTATTGGAAAGACAAGGTTATCGATT 605
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 478 AATGGTTGAAAGAAGGAATGGAATGCATTTTGCTGTATTGGAAAGACAAGGTTATCGATT 537
Query 606 TCGATCTACCGATTACAGTTAAGCTAAAAGTGGTTGACGTTGATCCTGGCCTTCGCGGTG 665
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 538 TCGATCTACCGATTACAGTTAAGCTGAAAGTGGTTGACGTTGATCCTGGCCTTCGCGGTG 597
Query 666 ATACTGTGCAAGGTGGATCAAAACCGGCGACAATGGAAACGGGTGCAATAGTTGCTGTAC 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATACTGTGCAAGGTGGATCAAAACCGGCGACAATGGAAACGGGTGCAATAGTTGCTGTAC 657
Query 726 CACTCTTTATTAACGTCGGTGAAGAGATATTTGTGGACACAAGAACTGGTGCATACATGA 785
|||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 658 CACTCTTTATTAACGTTGGTGAAGAGATATTCGTGGATACTAGAACTGGTGCATACATGA 717
Query 786 ACCGAGCGTGATCCGGGTCTACTACACCTAG 816
| || ||||||||||||||||||||||||||
Sbjct 718 ATCGGGCGTGATCCGGGTCTACTACACCTAG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5