BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08760.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478178 jgi|Araly1|478178|fgenesh2_kg.3__879__AT3G08760.1 3088 0.0
> Ahg478178 jgi|Araly1|478178|fgenesh2_kg.3__879__AT3G08760.1
Length=2098
Score = 3088 bits (1672), Expect = 0.0
Identities = 1994/2142 (93%), Gaps = 52/2142 (2%)
Strand=Plus/Plus
Query 1 CTCTAAAATCTCTCACTTTCCTAAACAGAGAGACCCCTTATGAGTTTTctcctcctcctc 60
||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
Sbjct 1 CTCTAAAATCTCTCACTTTCCTAAACAGACAGACCCCTTATGAG--TT-TCCTCCT--T- 54
Query 61 ctcctcttccttcctcATCCCAGAAATTTCCGATTTCACTTTCACATCTCCCTCTCTCTT 120
|| |||| ||| || ||||||||||||||||||||| |||| ||||| |||| || |
Sbjct 55 CT--TCTT-CTT-CT--TCCCAGAAATTTCCGATTTCATTTTCGCATCT--CTCTTTC-T 105
Query 121 ACAACTCTCTATCCGTAGTTTCAGTTTCGTCCTAGAATTTCTTT-TCTTG--TC-TGTTC 176
| ||||||| ||| ||||||||||| || || ||| ||| | ||| || | ||
Sbjct 106 -C-TCTCTCTAGCCGCAGTTTCAGTTTGGT-CT-CCTTTTGTTTGT-TTGAATCAT-TTT 159
Query 177 CAGATGAAATTGTGAGTTCTCCGAGTTATATGCATCCGTTAGAATCAAAGCGGTAATCAA 236
||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 160 CAGATGAAATTGTGAGTTCTCAGAGTTTTATGCATCCGTTAGAATCAAAGTGGTAAT--- 216
Query 237 AAGCAGAATTTAGAGGATTGAAAAAGATGGTTTTGGGGTGTTTCCCTTTGAAAAGCAAGA 296
| | | | |||| |||||||||||||||||||||||| ||||||||||
Sbjct 217 ---C-------A-A--A---AAAACGATGGTTTTGGGGTGTTTCCCTTTAAAAAGCAAGA 260
Query 297 AGAAACGTGGCTCTGTTTCTATGAAGCGGTTGGATCTTGAAGAAAGCAAGCCAACTGCTT 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 261 AGAAACGTGGCTCTGTTTCTATGAAGCGGTTAGATCTTGAAGAAAGCAAGCCAACTGCTT 320
Query 357 TACCTGAGCCACCAAAGATTCCAAGTCGTAATTTACAATCAGCTCCTCCGAGTTTCAGAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TACCTGAGCCACCAAAGATTCCAAGTCGTAATTTACAATCAGCTCCTCCGAGTTTCAGAA 380
Query 417 CTCGTGTGAAGCCAATTCAATCTAACAACGGTGGAACCGGAGAGATGAGTAGCCGAGCAA 476
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 381 CTCGTGTGAAGCCAATTCAATCTAACAACGGTGGAACCGGAGAGATGAGTAGTCGGGCAA 440
Query 477 GAGTCATGTCTGCTCCGTCAAGCATCCACGGTGCAGCGGAACGGGATTTGCTTGCTGGTG 536
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 441 GAGTCATGTCTGCTCCATCAAGCATCCACGGTGCAGCGGAACGGGATTTCCTTGCTGGTG 500
Query 537 TTTACCACGACGAGCAAGATGAACAACCAAGAGATCCACGTACTTCTACTAAAGAATCTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 501 TTTACCACGACGAGCAAGATGAACAACCAAGAGATCCACGTACTTCTACTAAAGAGTCTA 560
Query 597 GCCCTCAACCACTTCCGTTACCGTCACCAAGAACTGGTTCTTCATTGAAGAATTGGGGAA 656
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 561 GCCCTCAACCGCTTCCGTTACCATCACCAAGAACTGGTTCTTCGTTGAAGAATTGGGGGA 620
Query 657 GCTTTAAGTCGTTTAACGGAAGCAGCGGTCGGTTATCATCATCCGCAGCTGTATCTGGAC 716
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 621 GCTTTAAGTCGTTTAACGGAAGCAGCGGTCGGTTATCCTCATCCGCAGCTGTATCTGGAC 680
Query 717 CTTTACCTTTGCCACCTAGCGGGTCAGTTAGGAGCTTTTCATATGATGAAGTAATGGCTG 776
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 681 CTTTACCTTTGCCACCTAGCGGGTCAGTTAGGAGCTTTTCATATGATGAAGTTATGGCTG 740
Query 777 CGTGTAACGCTTTTTCTTCAGACCGATGTGTCATGGAAGGTCTTTCATCTGTTATGTACA 836
| |||||||||||||| || |||||||| ||| |||| |||||||||||||||||||| |
Sbjct 741 CCTGTAACGCTTTTTCGTCTGACCGATGCGTCGTGGAGGGTCTTTCATCTGTTATGTATA 800
Query 837 TGGCTTCCTTTGGTGATGAGGCTTCGACCTCAGGTTTAAAGAAGGTTGACGCAACTGTTG 896
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 801 TGGCTTCCTTTGGTGATGAGGCTTCGACCTCAGGCTTAAAGAAGGTTGACGCAACTGTTG 860
Query 897 TACGACTTCACGTAATTACTCAGAGTATTAGGGAGTTCATTAATGAAGTCAACACATTGG 956
| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 861 TGCGACTTCACGTAACTACACAGAGTATCAGGGAGTTCATTAATGAAGTCAACACATTGG 920
Query 957 CGTCGCTGCAACACCAGAACCTTTGTAAGCTGGTAGGCTATCATGCTCGTGACGGTTCTG 1016
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 921 CGTCGCTGCAACACCAGAATCTTTGTAAGCTGGCAGGCTATCATGCCCGTGACGGTTCTG 980
Query 1017 ACACAAGAATGTTGGTGTACGAGAGGCTTGCTCT-GGGCAGCTTGGACCGTTTACTGCAT 1075
|||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |||
Sbjct 981 ACACAAGAATGTTGGTGTACGAGAGGCTTGCTCTCGGG-AGCCTGGACCGGTTACTCCAT 1039
Query 1076 GGGAGATCAGATGGGCCTCCTCTTGATTGGAACACTAGAATGAAGATTGCACTATGCGCA 1135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1040 GGGAGATCAGATGGGCCTCCTCTTGATTGGAACACTAGAATGAAGATTGCTCTATGCGCA 1099
Query 1136 GCTCAGGGTCTAACCTTCTTGCACGAAGAAGGCCCTTTTCAGGCAATGTACAATGAATTT 1195
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1100 GCGCAGGGCCTAACCTTCTTGCATGAAGAAGGTCCTTTTCAGGCAATGTACAATGAATTT 1159
Query 1196 TCGACGGCAAATATCCAAGTCGATAAAGATTTCAGCGCCAAGCTATCAGGATACGGTTGT 1255
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TCGACGGCGAATATCCAAGTCGATAAAGATTTCAGCGCCAAGCTATCAGGATACGGTTGC 1219
Query 1256 GCAGGCCATGCGCCTGAGACAGAGACATCTAATAGTTCGGCACTTGCTAATCTCTCTGTC 1315
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |||
Sbjct 1220 GCAGGCCATGCGCCTGAGACAGAGACATCTAATAGTTCAGCACTTGCGAATCTCCCGGTC 1279
Query 1316 GAGACTCTAGAGAGAGGGCTTTTGACCCCGAAGAGCAATGTGTGGAGCTATGGAATAGTT 1375
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1280 GAGACTCTAGAGAGAGGGATTTTGACCCCAAAGAGCAATGTGTGGAGCTATGGAATAGTT 1339
Query 1376 CTTCTTGAGATGTTAACGGGTCGGAAAAATATGGACGGGTCTTACCCGAAAGAAGAGAGG 1435
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1340 CTTCTTGAGATGTTGACGGGGCGGAAAAACATGGACGGGTCTTACCCGAAAGAAGAGAGG 1399
Query 1436 AACTTAGTGAAATGGAGCAGAGCTTTTCTAGCAGATGATTGCAGGCTCTCGCTTATAATG 1495
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1400 AACTTAGTGAAATGGAGCAGAGCTTTCCTAGCAGACGATTGCAGGCTCTCGCTTATAATG 1459
Query 1496 GATCCTCAGCTTAAAGGTCGGTTTCCGGCAAAAGCGGCTAGGAGCATAGCAGATATAGCA 1555
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1460 GATCCTCAGCTTAAAGGTCGGTTTCCGGCAAAAGCGGCAAGGAGCATAGCAGATATAGCA 1519
Query 1556 CAGAAATGTCTGCAGGTGGAGCCTTCAGAGCGTCCAACCATGAGAAACATCGTGGATCAA 1615
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1520 CAAAAATGTCTGCAGGTGGAACCATCAGAGCGTCCAACCATGAGAAACATCGTGGATCAA 1579
Query 1616 CTCAAGATCATACAGGACATGAAGTACTCGTGTAGGTTCCCATTGAGAGAACCCGCACCG 1675
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1580 CTTAAGATCATACAGGACATGAAGTACTCGTGTAGGTTCCCTTTAAGAGAACCCGCGCCA 1639
Query 1676 GTCGTGGCAAGGAAACATATGGGAAGATCAAGCAGTCTCAACACGATTATTTGGACCCCG 1735
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1640 GTCACAGCAAGGAAACATATGGGAAGATCAAGCAGTCTGAACACGATTATTTGGACCCCA 1699
Query 1736 GCATCAGTGCCACCAAGGTCGAGTTTTTCACCGTCACCTCCACCACGACGACCGTCTGTC 1795
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1700 TCATCAGTGCCACCAAGGTCGAGTTTTTCACCGTCGCCTCCACCACGACGACCGTCGGTT 1759
Query 1796 TCACCCACAAGGGGACGGACGCTCGTGTTTCCCCCAGTGTTTCCGCCGCGAGCGTGTTCA 1855
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1760 TCACCCACAAGGGGACGGGCGCTCGTGTTTCCGCCAGTGTTTCCGCCGAGAGCGTGTTCA 1819
Query 1856 TCTTTGGAGGAAATGGCTCGGGAAGAGGTTCGAAGATCGTCTTCAGCCAGTGGTAGGAGA 1915
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1820 TCGTTGGAGGAAATGGCTAGGGAAGAGGTTCGGAGATCGTCTTCAGCCAGTGGTAGGAGA 1879
Query 1916 ACTAGCCTCGAAGGGttttgatttgttcatatctctcttctttcttctttttcctatttg 1975
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1880 ACTAGCCTCGAAGGGTTTTGATTTGTTCATATCTCTCTTCTTTCTTCTTTT-CCTATTTG 1938
Query 1976 tttttaatttttggcgttgatttgttttttggattccaaatataaaaaatt-gttttttt 2034
|||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1939 TTTTAAATTTTTGGTGTTGATTTGTTTTTTGGATTCCAAATATAAAAAGTTTGTTTTTTT 1998
Query 2035 cttttt-ctttt-GTTGTTTATGAATCCGGACGTCGATAGAGAGGGTTTGTGATGTTTTG 2092
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1999 CTTTTTTCTTTTTGTTATTTATGAATCCGGACGTCGATAGAGAGGGTTTGTGATGTT--G 2056
Query 2093 TACATAATAATCAACATTTCTTCTTTCACATTAAAAAGAGAT 2134
|||||||||||||||||||||||||||| || ||||||||||
Sbjct 2057 TACATAATAATCAACATTTCTTCTTTCAGATCAAAAAGAGAT 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5