BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G08770.2

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478179 jgi|Araly1|478179|fgenesh2_kg.3__880__AT3G08770.1          643    0.0  


> Ahg478179 jgi|Araly1|478179|fgenesh2_kg.3__880__AT3G08770.1
Length=562

 Score =  643 bits (348),  Expect = 0.0
 Identities = 500/569 (88%), Gaps = 27/569 (5%)
 Strand=Plus/Plus

Query  16   ACAAATACACCaaaaaaaaaaaaaCAGAAAGTAACATGAGATCTCTCTTATTAGCCGTGT  75
            ||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  1    ACAAACACACCAACAAAAAAAAAACAGAAAGTAACATGAGATCTCTTTTACTAGCCGTGT  60

Query  76   GCCTGGTTCTTGCTTTACACTGCGGTGAAGCAGCCGTGTCTTGCAACACGGTGATTGCGG  135
            |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCTGGTTCTTGCTTTGCACTTTGGTGAAGCAGCCGTGTCTTGCAACACGGTGATTGCGG  120

Query  136  ATCTTTACCCTTGCTTATCCTACGTGACTCAGGGCGGACCGGTCCCAACCCTCTGCTGCA  195
            |||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct  121  ATCTTTACCCTTGCCTCTCGTACGTGACTCAGGGCGGACCGGTCCCAAGCCTCTGCTGCA  180

Query  196  ACGGTCTCACAACACTCAAGAGTCAGGCTCAAACTTCTGTGGACCGTCAGGGGGTCTGTC  255
            ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct  181  ACGGTCTCACAACACTCAACAGTCAGGCTCAAACTTCTGCGGACCGTCAGGGCGTCTGTC  240

Query  256  GTTGCATCAAATCTGCTATTGGAGGACTCACTCTCTCTCCTAGAACCATCCAAAATGCTT  315
            |||||||||||||||| ||||||||||| |||||||||||||| |||||| | |||||||
Sbjct  241  GTTGCATCAAATCTGCAATTGGAGGACTTACTCTCTCTCCTAGCACCATCGACAATGCTT  300

Query  316  TGGAATTGCCTTCTAAATGTGGTGTCGATCTCCCTTACAAGTTCAGCCCTTCCACTGACT  375
            ||   |||||||| ||||||||| |  | ||||||||||||||||||||||||||  |||
Sbjct  301  TGTCTTTGCCTTCGAAATGTGGTATTAACCTCCCTTACAAGTTCAGCCCTTCCACCAACT  360

Query  376  GCGACAGTG--A-G--A--CAAGCAGAAAATCTTAAAGGAAGCTACTACAAGAACTATAA  428
            ||||||||   | |  |  |||||||||||||||||||||||||||||| |   ||| ||
Sbjct  361  GCGACAGTATTAAGTGAGGCAAGCAGAAAATCTTAAAGGAAGCTACTACTA---CTACAA  417

Query  429  TAACCT-AATAAT-TAATAA-ATGAGGGCATTGGTTTGCTAGTTGCTAA--TTGATCAGT  483
             ||| | |||||  |||||| ||  ||   ||| |  ||||||||| ||  |||||||||
Sbjct  418  GAACTTTAATAACCTAATAATATT-GGT--TTGCTA-GCTAGTTGC-AACGTTGATCAGT  472

Query  484  GATGTATTGTCATTTTGAATGTTCTAATAT-----CAGC--AGGCACTTATCTCTGAAAC  536
            ||||||||||||||| ||||||||||||||     ||||  |||| ||||||||||||||
Sbjct  473  GATGTATTGTCATTTCGAATGTTCTAATATAATATCAGCGCAGGCTCTTATCTCTGAAAC  532

Query  537  ATTCTCCATGCTTCCACCCTATACACATA  565
            ||||||||||||||||||||| |||||||
Sbjct  533  ATTCTCCATGCTTCCACCCTACACACATA  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22073168943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5