BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08780.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478180 jgi|Araly1|478180|fgenesh2_kg.3__881__AT3G08780.1 1840 0.0
> Ahg478180 jgi|Araly1|478180|fgenesh2_kg.3__881__AT3G08780.1
Length=1282
Score = 1840 bits (996), Expect = 0.0
Identities = 1200/1296 (93%), Gaps = 23/1296 (2%)
Strand=Plus/Plus
Query 31 AGAGATTTCAGTGACGTCACATC-TTTTCCTTTTGGTGTTCTTC-TCGTCGCCATGGACG 88
||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||
Sbjct 2 AGAGATTTCAGTGACGTCACATCGTTTCCCTTTTTGTGTTCTTCTTCGTCGCCATGGACG 61
Query 89 ATCTCTCTCTAGAGAAAATCGAGATTTCGGGTCCAACATTGGCGTCACTGATTCAACGAG 148
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 62 ACCTCTCTCTAGAGAAAATCGAGATATCGGGTCCAACATTGGCGTCACTGATTCAACGAG 121
Query 149 CTTCATCTTCTCCCAGTGACGTCGATGGCTTGATCTTCGGCCAAATCCACCGAATCGTCT 208
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 CTTCCTCTTCTCCCAGTGACGTCGATGGCTTGATCTTCGGCCAAATCCACCGCATCGTCT 181
Query 209 CTTCTAATCTATCCGACGATTCTCCGGCGGATATCGCCTCGAGTTCCTCCTCATCTGATC 268
|||| ||||| | ||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct 182 CTTCCAATCTTTACGACGATTCTCCGGCGGATTTCGCCTCGAG-T--TCCTCATCTGATC 238
Query 269 AAATTGTCGCCACCGTTACAAGCTTTATCTGCTCTGGTAAAACTGTCTCCTTCTACGATC 328
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 239 AAATTGTCGCCACCGTTACAAGCTTTATTTGCTCTGGTAAGACTGTCTCATTCTATGATC 298
Query 329 CGCTTGGCCGAGTTGACTCGCGTCGAATCGATTCCCTCCGAGTCGACTCACCGGACCACC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 299 CGCTTGGCCGAGTTGACTCGCGTCGAATCGATTCCCTCCGAGTCGACTCACCGGACCGCC 358
Query 389 TAATTGGGTGGTTCTCCGCCCGCAGGAAAACCGCTAACCGTCCATCAATGAGAGAGTTAG 448
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 359 TAATTGGCTGGTTCTCCGCCCGCAGGAAAACCGCTAAACGTCCATCTATGAGAGAGTTAG 418
Query 449 CCGTCACGTCGTCTCTCTCGTCTCAATTTCACTTACCAATCGAGGATTTGCAAAACCCTA 508
||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 419 CCGTCGCGTCGTCTCTCTCGTCTCAATTTCACTTACCGATCGAGGATTCGCAAAACCCTA 478
Query 509 GATCGATGAACATGGCTTCATCCGTGTTCTTTCTTCTTACTATGCCATTGACGGATCAGT 568
||||| |||||||||||| |||||||||||||||||||||| ||||| |||| ||||||
Sbjct 479 AATCGACGAACATGGCTTCCTCCGTGTTCTTTCTTCTTACTACGCCATCGACGAATCAGT 538
Query 569 GCATTCACACGCACGAGTACCGTGCGTACCAGTTCCGATCCTCGAAACAACGGCTCGAAC 628
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 GCATCCACACGCACGAGTACCGTGCGTACCAGTTCCGACCCTCGAAACAACGGCTCGAAC 598
Query 629 CTAGATCCGTTGGTATAGTCAACATTGGACCAGCGTTTCGAGGCCATTACGGTTCGTTTA 688
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CGAGATCCGTTGCTATAGTCAACATTGGACCAGCGTTTCGAGGCCATTACGGTTCGTTTA 658
Query 689 GTCCGAAATCGGGATTTCCACCGTTGATCTGCGAGTTGAGTAGCTCAGCCATGAGCGTGG 748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTCCAAAATCGGGATTTCCACCGTTGATCTGCGAGTTGAGTAGCTCAGCCATGAGCGTGG 718
Query 749 ATTGCGATGAGAGTTCCTTGAGTGCGAAGAAACAATCAGCGAAAGATCAGAAGGAGATCG 808
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 719 ATTGCGATGAGAGTTCCTTAAGTGCGAAGAAACAATCAGCAAAAGATCAGAAGGAGATTG 778
Query 809 ATGCGTTAGCAGAGGGGTTTCAAGTTGGAGAGTT-GAAACGTTTGGTTGGAGCTGAAGCT 867
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 779 ATGCGTTAGCAGAGGGGTTTCAAGTTGGAG-GTTTGAAACGTTTGGTTGGAGCTGAAGCT 837
Query 868 GCGAATTACACAGGCGGGATTGAAGAAATGTATGAGAGAATGCTGGCGAAGATCGAGAGC 927
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 838 GCGAATTACACTGGCGGGATTGAAGAAATGTATGAGAGAATGTTGGCGAAGATCGAAAGC 897
Query 928 TTGGCTTCTGATGTTGAGAAGAGCTCGGCTAGGGTATTTCAACAGGAAAAGCATAATAGG 987
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||
Sbjct 898 TTGGCTTCTGATGTTGAGAAGAGCTCAGCTAGGGTATTTGAACAGGTAAAGCATAATAGG 957
Query 988 AAGTTGAGAAACCG-AGTAGCCAGAATCGGGAGATGAGGCTTCTTTTGAATTTCT-TTAA 1045
|||||||||||| | | |||||||||||||| ||||| |||||| |||||||||| ||
Sbjct 958 AAGTTGAGAAACAGGA-TAGCCAGAATCGGGCGATGAAGCTTCTCTTGAATTTCTGTTTT 1016
Query 1046 G-GTTTTTTATCGAGTCTA-TATACTTGGAATTCAATCCAAGAGAACACTG-GCTAGTAG 1102
||||| | || | || | ||||||||||||| | || | | | ||| | | |
Sbjct 1017 TTGTTTTCT-TCTA-TC-ACTATACTTGGAATTTTA-CCTT-A-ATCCCTGAGA-AC-AC 1068
Query 1103 TGGCTAGCGCAATCGGAACTATATGCGGGAAACGATTTGTATTATAGTTTAGCGATTTCC 1162
||||||||| ||| ||| ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 1069 TGGCTAGCGTAATTGGAGCTATATGCGGGAAACCATTTGTATTATAGTGTAGCTATTTCC 1128
Query 1163 TAGTTAAACCTTTCCTGGCTAGATTGATTTGTCACAAGAGATCCCTTTTCCTTGTATGGC 1222
|||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
Sbjct 1129 TAGTCAAACCTTTCCTGGCTAGATTGCTTTGTCACAAGAGATCCCTTTACCTTGTATGAC 1188
Query 1223 TAGTTTTTGTTTGAAGAGAAACAATCAAGAATGGGATTGATTCATGTCAAGAGTTTCTAT 1282
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1189 CAGTTTTTGTTTGAGGAGAA-CAATCAAGAATGGGATTGATTCATGTCAAGAGTT-CTAT 1246
Query 1283 AATTGGGCGTATAATATATGTTTATGAAGTTTAATA 1318
|| |||||||||||||| ||||||||||||||||||
Sbjct 1247 AAATGGGCGTATAATATTTGTTTATGAAGTTTAATA 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5