BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08800.1
Length=3097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478183 jgi|Araly1|478183|fgenesh2_kg.3__884__AT3G08800.1 4617 0.0
> Ahg478183 jgi|Araly1|478183|fgenesh2_kg.3__884__AT3G08800.1
Length=3024
Score = 4617 bits (2500), Expect = 0.0
Identities = 2878/3056 (94%), Gaps = 44/3056 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCATCAATGGAGGAAGACGACTCGATTTCTCCTGAATCAATCTCTCTCGACACT 60
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1 ATGACTTCATCAATGGAGGAAGACGACTCGATCTCTGCTGAATCAATCTCTCTCGACACT 60
Query 61 CTAGCTTCTATTAGGTCACTCATTATCAACGCCGACACTTCCGACTCGGTGATTTCCTCG 120
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTAGCTTCTATTAGATCACTCATTATCAACGCCGACACTTCCGTCTCGGTGATTTCCTCA 120
Query 121 GTGTTCGATTTCCTTACTGGTCTTCTGAGCCGAGGGAACTCGGCGATTCTTCACCATGTC 180
|| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 121 GTTTTCGATTTCCTTACTGGTCTTCTGAGTCGAGGGGACTCGGCGATTCTTCACCATGTC 180
Query 181 CTCAAGCTACTCTCCGACCTTGCTTTCCGGCGAAAGGAATTAGCACCACAAATCTTCGAT 240
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTCAAGCTACTCTCCGACCTAGCTTTCCGGCGAAAGGAATTAGCAAAACAAATCTTCGAC 240
Query 241 TCAATCCTGTCCAACTTACTCCGCCTTCATAACACCGTCGCTGAGGCGAGCCACGAACGC 300
||||||||||||||||||||||||||||| ||| | ||| |||| |||||||| ||||
Sbjct 241 TCAATCCTGTCCAACTTACTCCGCCTTCAAAACGGCACCGCCGAGGTGAGCCACGGACGC 300
Query 301 GCCGCCGTGGAATCGCTTGCGGTGCTTGCGTCATTATCCG-AACGAACCCCTAGCATCGC 359
|||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||||
Sbjct 301 GCCGCCGTGGAATCGCTTGCTGTGCTTGCGTCATTATCCGAAAC-AAATCCTAGCATCGC 359
Query 360 CGCCGCGCTTTCCAAAATCGACGACGAGGTATTTGCGTCGATTTGCCTCGGAGCACCTAT 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 CGCCGCGCTTTCCAAAATCGACGGCGAGGTATTTGCGTCGATTTGCCTCGGAGCACCTAT 419
Query 420 ATCTTCTCGGCTGTGGCTACTTAGGAACGCGGATAGGTTCAATGTTCCGTCGTCTGTACT 479
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 420 ATCTTCTCGGCTGTGGCTACTTAGGAACGCGGAGAGGTTCAATGTTCCGTCGTCCGTACT 479
Query 480 ATTCACCTTGTTTTTAGGGTTTAGTAAGGATCCGTATCCATATATCAGAAAAGTAGCTCT 539
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 480 TTTCACCTTGTTTTTAGGGTTTACTAAGGATCCGTATCCATTTATCAGAAAAATAGCTCT 539
Query 540 CGATGGACTGATTAATATATGTAACGCTGGTGACTTCAATCACACTCATGCCGTAGAAGG 599
|||||| |||||||||||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 540 GGATGGATTGATTAATATATGTAACGCTGGTGACTTTAATCACGCTCACGCCGTAGAAGG 599
Query 600 TTGCTATACTCGTGCTGTTGAGCTTCTAAGCGATGCTGAAGATAGCGTCAGATCTTCTGC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGCTATACTCGTGCTGTTGAGCTTCTAAGCGATGCTGAAGATAGCGTCAGATCTTCTGC 659
Query 660 AGTTCGTGCCGTCAGTGTGTGGGGCAAAGTGATGATAGCATCCAAGGAAGAAGAGATGAA 719
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 660 AGTTCGTGCCGTCAGTGTGTGGGGCAAAGTCATGATATCATCCAAGGAAGAAGAGCTGAG 719
Query 720 CAGAAGGGATTGTACAGATGCTGTTTTTCTCCAGCTTTGTTCTGTAGTGAGAGATATGAG 779
|||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 720 CAGAAGAAAGTGTACAGATGCTGCTTTTCTCCAGCTTTGTTCTGTTGTGAGAGATATGAG 779
Query 780 TGTAGACGTGAGGGTTGAGGTCTTCAAGGCATTTGGGATAATAGGAACTGCATCAGAAAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTAGACGTGAGGGTTGAGGTCTTCAAGGCATTTGGGATAATAGGAACTGCATCAGAAAG 839
Query 840 CATTATATTGCAAACACTTTCTAAAAAAGTATTGGGAGCTGGAAAAGGGAAGAAACCGCA 899
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CATTATACTGCAAACACTTTCTAAAAAAGTATTGGGAGCCGGAAAAGGGAAGAAACCGCA 899
Query 900 GAATCTTCTTTCTAATGGATCAGCTGATGTCAGTTCTGCAGCTGGAGTTTACATCCATGG 959
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 900 GAATCATCTTTCTAATGGATCAGCTGATGTCAGTGCTGCAGCTGGAGTTTTCATCCATGG 959
Query 960 TTTTGAAGATGAATTCTACGAGGTACGGGAAGCTGCGGTTGACTCCTTCCACTCCCTCTC 1019
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 960 TTTTGAAGATGAATTCTACGAGGCACGGGAAGCTGCGGTTAACTCCTTCCACTCCCTCTC 1019
Query 1020 AGTAAATTCTATCAAATTCCCAGATGAAGCTGTGTATTTATTGATGGATATGCTATACGA 1079
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1020 AGTAAATTCTATCAAATTCCCAGATGAAGCTGTGTATCTATTGATGGATATGCTGTACGA 1079
Query 1080 TGATTATATGGTTGTGAGGTTGAAAGCTTTAAAGGCATTGCATCATATAGCAGACTTGGG 1139
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 TGATTATATGGTTGTCAGGTTGAAAGCTTTAGAGGCATTGCATCATATAGCAGACTTGGG 1139
Query 1140 GAACCTGAAGATACAGGAAACTTATATGCCTGCCTTTTTGGATGCTATTGTTGATACTTC 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GAACCTGAAGATACAGGAAACTTATATGCCCGCCTTTTTGGATGCTATTGTTGATACTTC 1199
Query 1200 TGAAAACATAAGAGTTGAGGCTAGAAACATTCTTAAATTGGCAAAGCTGCCTGATCTGAA 1259
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGAAAACATTAGAGTTGAGGCTAGAAACATTCTTAAATTGGCAAAGCTGCCTGATCTGAA 1259
Query 1260 GCTGGTCAACAAATGTATTGACGGTGTCCTGAAAAGTTTAGAGATGTATCCACAGGACGA 1319
|||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1260 GCTGGTCAACAATTGTGTTGATGGTGTCCTAAAAAGTTTAGAGATGTATCCACAGGACGA 1319
Query 1320 ACCTGATATCTTGTCTGCTCTGTTCCATTTCGGACAAAACCACACAAATTTCTTAGTCAG 1379
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1320 ACCTGATATCTTATCTGCTCTGTTCCATTTCGGACAAAAACACCCAAATTTCTTAGTCAG 1379
Query 1380 TATGGTCAAGAGATTTAGTGAAAAGTTAGGGACAGCTTCTGGAAGTAAAGC-GGAATTCA 1438
||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||
Sbjct 1380 TATGGTCAAGAGATTTAGTGAAAAGTTAGGGACAGCTTCCGGAAATAAA-CTGGAATTCA 1438
Query 1439 ATAGCCGGCAGTTATCTGCTTCTCTGACGCTGATAATCTCAGCCCCTCTCTCAAACAAAC 1498
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1439 ATAGCCGACAGTTATCTGCTTCTCTGATGCTGATAATCTCAGCCCCTCTCTCAAACAAAC 1498
Query 1499 AAAGCATCACTTCGATACCACCTCTGGCATTTTCATATTCACTTGCAATGCTGGGGAAAT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AAAGCATCACTTCGATACCACCTCTGGCATTTTCATATTCACTTGCAATGCTGGGGAAAT 1558
Query 1559 TCTCTAGTGGACTTCATGATATGATGGACCAGGATATGCTTCTGGCTTACTTGACTCATT 1618
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1559 TCTCTAGTGGACTTCATGATATGATGGACCAGTATATGCTTCTGGCTTACTTGACTCATT 1618
Query 1619 GCGCTATTCTTTCTTCTTCTTCTGGGACAGAATTCAACAAAGGAGATGTATTTTTTCATG 1678
||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 1619 GCGCTATTCTTTCGTCTTCTTCGGGGACAGAATTCAACAAAGGAGATATATTTTTTCAGG 1678
Query 1679 CATATAGAGACAGTAATGCAGATCTTGCGGGAAACCCCGTCCTACTACC-AGGTAAAGAT 1737
||||||| |||||||||||||||||| | ||||||||||||||| |||| || ||||||
Sbjct 1679 CATATAGGGACAGTAATGCAGATCTTTCCGGAAACCCCGTCCTATTACCCAGC-AAAGAT 1737
Query 1738 ATACCTGCTGAGAGCAAATACATGGCTTGCAAAGCAGAACTGGAAATTGGAAATCAAGCA 1797
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1738 ATACCTTCTGAGAGCAAATACATGGCTTCCAAAGCAGAACTGGAAATTGGAAATCAAGCA 1797
Query 1798 CTTAAGTTTGTTAACCATATACTGTTGAAAATAAAGGCTGCCTGGCTGTTATCACAATCA 1857
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1798 CTTAAGTTTCTTAACCATATACTGTTGAAAATAAAGGCTGCCTGGTTGTTATCACAATCA 1857
Query 1858 GGGTGCTCGAAAGAAGCACTCCGAGCATTGAGGGCTTGCAAACAGGAGTTAGCAACTTTG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GGGTGCTCGAAAGAAGCACTCCGAGCATTGAGGGCTTGCAAACAGGAGTTAGCAACTTTG 1917
Query 1918 ACAGCCGATTCTTCAATCTCCAAAGGTACATTGGACTTTATTTGTCAGTACGTTCACGTT 1977
||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||||||
Sbjct 1918 ACAGCCGATTCTTCAATCTCCAACGGTACATTAGAATTTATCTGTCAGTATGTTCACGTA 1977
Query 1978 ATAGAACTTCTCGTTCAAGTATGGCCTCATTTT-AATTACTCAAGACACATCAGCACGTG 2036
||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 1978 ATAGAACTTCTCGCTCAAGTATGGCCTCATTTTGAAT-ACGCAAGACACATCAGCACGTG 2036
Query 2037 TAGTTCTGTAGAAGTGGAACTACTGATGGAAGAGGTAGAGATAAAACTCATGGAGATAAG 2096
||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2037 TAGATCTGTAGAACTGGAACTACTGATGAAAGAGGTAGAGATAAAACTGATGGAGATAAG 2096
Query 2097 GTGTAGATTCACAGGCCTGTCTACGGAGGAGTCATTAGTATTGGAGCTAGTAATTTTTGG 2156
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 2097 GTGTAGATTCACAGGCCTGTCTACGGAGGAGTCATTAGTAATAGAGTTAGTAATTTTTGG 2156
Query 2157 TTGCTTGTTAAGGCTATATAAATTTGAGATTTGCTGCCGCCTTAGCTGCATGGAGAAGCT 2216
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2157 TTGCTTGTTAAGGCTATATAAATTTGAGATTTGCTGCCGCCTTAGCTGCACGGAGAAGCT 2216
Query 2217 ATCTTCAACAATATCTCAATTAGAGCTCCACCATGAACAACAATGCACCAAACCATCAGA 2276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 ATCTTCAACAATATCTCAATTAGAGCTCCACCATGAACAACAATGCACCAAACCATCAGA 2276
Query 2277 -TTTTCTAACTGAAACTAAGAAGTCATTGGAAGAGTTTGGGAGCTCTGACGATATAAATA 2335
|||| |||| |||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 2277 ATTTT-TAACCGAAACTAAGAAGTCATTGAAAGAGATTGGGAGCTCTGATGATATAAATA 2335
Query 2336 GCTGTAGACTGCTTGATCTCATCAAGATATTCAAATGCTTCTCTCCGGAACAGTTTACGT 2395
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2336 GCTGTAGACTGCTTCATCTCATCAAGATATTCAATTGCTTCTCTCCGGAACAGTTTACGC 2395
Query 2396 TTTCTGTTAATCTGCAGTGTGTCAGTGCAGAGGTAGAGGTTCCTGGTAATGGTCCTTACA 2455
|||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 2396 TTTCTGGTAATCTGCAGTGTGTCAGCGCAGAGCTAGAGATTCCTGGTAATGGTCCTTACA 2455
Query 2456 GTCCGATTTCCTTTGTGCCTGGTCTCCCGGTGGCTATACCGTGTGAGATCACACTGCTTA 2515
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 2456 GTCCGATTTCCTTTGTGCCTGGTCTTCCGGTGGCTATACCGTGTGAGATCATGCTGCTTA 2515
Query 2516 ATGTGCCAAGAGATACCTGTTTATGGCTGAGAATATCAAGAAACGATGAAACTTGCCAAT 2575
|||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |
Sbjct 2516 ATGTGCCAAGAGATACCTGTTTGTGGCTGAGAATATCTAGAAGCGATGAAACTTGCCAGT 2575
Query 2576 TTGTGTACTTGGATCCAAACCTCTACAATGGAAATGGGAGAGAGAAGAGGTTCATGTTTA 2635
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2576 TTGTGTACTTGGATCCAAACCTCTACAATGGAGATGGGAGAGAGAAGAGGTTCATGTTTA 2635
Query 2636 CTGCAGTAACGTACATGACCCCAAGGGCTGTTGTGTTCACATTGCGGGTCTCAATAGGCA 2695
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2636 CTGCAGTAACGTACATGACCCCGAGGGCTGTTGTGTTCACATTGCGGGTCTCAATAGGCA 2695
Query 2696 TTGAGTGTTTGTTTGAAGACATTTGTTACAGAAAACAGCGTCATGGTCCCAAGCATCCAG 2755
| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2696 TAGAGTGTCTGTTTGAAGACATTAGTTACAGAAAACAGCGTCATGGTCCCAAGCATCCAG 2755
Query 2756 TGGCCTATCTGTGTAAGGAAAGAGAAATTCACCTTTCTCTTGTTTCAAGAACCTAAAATG 2815
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2756 TGGCCTATCTGTGTAAGGAAAGAGAAGTTCACCTTTCTCTTGTTTCAAGAACCTAA--TG 2813
Query 2816 TCAGTAAACGTACTATGTGAGGTATTCTTCACATTAATGAGTCTCCAGAGAGAACCCGTC 2875
| | | | | ||| | |||||||||||||||||| |||||| ||| ||||
Sbjct 2814 T--G-A---G-A-TAT-T--------CTTCACATTAATGAGTCTGCAGAGAAAACTCGTC 2856
Query 2876 ATGGCTTTAAAAGAGCTGGTAATT-TGGCTAAACGACTAAGAGGGTTGACATGGGATGTG 2934
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 2857 ATGGCTTTAAAAGAGCTGCTAATTGTGGCTAAAGGACTAAGAGGGTTGACATGGGATG-- 2914
Query 2935 CGATGCTGCCGAACATAGAGTTTGGAAGAAGATTTAAAGTGTTACTACTTTTGTAGCT-A 2993
| ||| | ||||||||| ||||||||||||||| ||||||||||| ||||||||| |
Sbjct 2915 C--TGC--C-GAACATAGATTTTGGAAGAAGATTTTGAGTGTTACTACCTTTGTAGCTTA 2969
Query 2994 CTCATTGAGACAAGTTTTTGCGAAAA-TGCA--AA--GGCCAATGCCAGTAACCAA 3044
||||||||||||| |||||| |||| |||| || ||||||||| |||||||||
Sbjct 2970 CTCATTGAGACAAAATTTTGC-AAAACTGCATCAAAAGGCCAATGCTAGTAACCAA 3024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116975142395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5