BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08810.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700 699 0.0
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 329 2e-89
Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1 278 8e-74
Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828 165 6e-40
Ahg921494 jgi|Araly1|921494|scaffold_102775.1 97.1 2e-19
> Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700
Length=1047
Score = 699 bits (378), Expect = 0.0
Identities = 493/545 (90%), Gaps = 22/545 (4%)
Strand=Plus/Plus
Query 32 ATGTCTTACCCGGAAAGAAAGAGGAAGAGGAGTCGGTGGTCAAAGCCGCATTCGAC-CCA 90
|||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||
Sbjct 1 ATGTCTTACCCGGAAAGAAAGAGGAAGAAGACACGGTGGTCAACGCCGCATTCGACTCC- 59
Query 91 AAACCCGTCACCGTCACTTCCCGATGATGTGCTATTGAGCATCTTCGCACGCGTCTCAAG 150
||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 60 AAA-----C-CCGTCACTTCCCGATGATTTGCTATTGAGCATCTTCGCACGCGTGTCAAG 113
Query 151 ATTGTACTATCCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACC 210
||| |||||||| ||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 114 ATTATACTATCCTACTCTCT--CAC---T-C---AGCTTTCGATCTCTCCTAGCTTCACC 164
Query 211 AGAGCTTTACAAAGCCAGGTCACTCTCGGGAAACACCGAGA-TCTGTCTCTACGTGTGCT 269
|||||||||||| |||||||||||||||| ||||||||||| | |||||||| || ||||
Sbjct 165 AGAGCTTTACAAGGCCAGGTCACTCTCGGCAAACACCGAGAGT-TGTCTCTATGTATGCT 223
Query 270 TACGGTGCTCTACTGGTTATCGCTGGTTTAGCCTCAGCCGTAAACCTGATCAAACCCTAA 329
||||||||| | |||||||||||||||| | |||| |||||||||||||||||||| |||
Sbjct 224 TACGGTGCTGTTCTGGTTATCGCTGGTTCACCCTCTGCCGTAAACCTGATCAAACCATAA 283
Query 330 CC--T-ATGAGGAGAGGAAGTCAAGTGGTTATGCTTTGGCTAGAGTCCCAATTCCCGGTG 386
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CCAATAATAAGGAGAGGAAGTCAAGTGGTTATGCTTTGGCTAGAGTCCCAATTCCCGGTG 343
Query 387 GTTCTCCTAATGTACGATCTTCGAGTCTCGTGGCGGTTGGTTCTGATATCTATAACATTT 446
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 344 GTTCTCCTAATGTACGATCTTCGAGTCTCGTGGCCGTTGGTTCTGATATCTACAACATTT 403
Query 447 GCGGATCCATCAACAAAGCGTCCTCCTCCTCTAGCGTCTCAATTCTGGATTGTCAGTCTC 506
||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||
Sbjct 404 GCGGATCCATCAACAAAGCGTCCCCCTCCTCTAGCGTCTCGATTCTGGATTGCCGGTCTC 463
Query 507 ACACGTGGCGGGAGGCTCCAAGCTTGCCGGTGGAGCTAAGTTCAATTTCTGCTAGCGTCC 566
||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 464 ACAAGTGGCGAGAGGCTCCAAGCTTGCCGGTGGAGCTATGTTCAGTTTCTGCTAGCGTCC 523
Query 567 GTGAT 571
||||
Sbjct 524 TTGAT 528
Score = 497 bits (269), Expect = 5e-140
Identities = 422/491 (86%), Gaps = 30/491 (6%)
Strand=Plus/Plus
Query 588 ATGGGTATTCTGATTCCCGGAAAAACTCCTTT-A---A-G--GT--GTTTGCTTACAATT 638
|||| ||| ||||||||||||||||||||||| | | | || | ||||||||||||
Sbjct 572 ATGGCTATCCTGATTCCCGGAAAAACTCCTTTGAGGTAGGAAGTGAGGTTGCTTACAATT 631
Query 639 CCAAGGAAGGTAGATGGGATCACCTAGTTGGACTTGGGGCGGGTAGTTTTATGCTTCCAG 698
|||||||||||||||||||| || || | ||||||| |||| |||||||| || |||
Sbjct 632 CCAAGGAAGGTAGATGGGAT-TCCAAG--GAACTTGGGATGGGTGGTTTTATGTTTTCAG 688
Query 699 ATTCTTATTGCGTGATAGATAACGTTTCGTACTCTGTATCCGATGGAATGTTCAGATGGT 758
|||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 689 ATTCTTATTGCGAGATAGATAACGTTTTGTACTCTTTATCCGATGGAGCGTTCAGATGGT 748
Query 759 ATGACACTGAGGTAAGAAG-GTGGAAAGATTTGAGGGGTTTGTTTCAGCTACCTAAGTTC 817
|||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
Sbjct 749 ATGACACTGAGGTAAG-AGAGTGGAAAGATTTGAATGGTTTGTTTCAGCTGCCTAAGTTC 807
Query 818 TCTGCGGGTGCTTGTGTTATATTGGCTGATTATGGTGGAAAGATGGCGGTCTTGTGGGAT 877
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 808 TCTGCTAGTGCTTGTGTTAGATTGGCTGATTATGGTGGAAAGATGGCGGTCTTGTGGGAC 867
Query 878 CAATTGCCTTATCATCATGGCTTTCATAAG-ACGATTCAGTGTGCGGTGATTGCGCTTGA 936
||||||||||||||| |||||| ||| ||| | |||||| ||||||||| | ||||
Sbjct 868 CAATTGCCTTATCATTATGGCTATCAAAAGGA-GATTCATTGTGCGGTG---G---TTGA 920
Query 937 AAGGCGCACAAGTTTTGTATT-TCGGGAGAAAAGTTGTCAAATTTGGGGGAAGGTTGAGT 995
||||| |||||| | || | | | ||| |||||||||| ||||||||||||| |||||||
Sbjct 921 AAGGCCCACAAGATATGAAATGTGGGG-GAAAAGTTGTGAAATTTGGGGGAAAGTTGAGT 979
Query 996 GGGTTGATGAT-TTA--CTTACAGTCCCTACATCGTATGATCTTGTGAAGGTTCTTGTTG 1052
|| | | |||| ||| |||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 980 GG-T-G-TGATCTTATGCTTACAGTCCCTACATCGTATGTTCTTGTTAAGGTTCTTGCTG 1036
Query 1053 CTACTCTTTGA 1063
|||| ||||||
Sbjct 1037 CTACGCTTTGA 1047
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 329 bits (178), Expect = 2e-89
Identities = 399/500 (80%), Gaps = 38/500 (8%)
Strand=Plus/Plus
Query 102 CGTCACTTCCCGATGATGTGCTATTGAGCATCT-TCGCACGCGTCTCAAGATTGTACTAT 160
||||||||||||||||| || ||||||| | | | ||||| ||||||||||||||||||
Sbjct 75 CGTCACTTCCCGATGATTTGATATTGAG-TTGTGTGGCACGGGTCTCAAGATTGTACTAT 133
Query 161 CCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGCTTTAC 220
||||||||||| | ||| ||| ||||||||||||| ||||| |||||||| |||||||||
Sbjct 134 CCGACTCTCTCTCTCGTCTCCAAGAGCTTTCGATCACTCCTGGCTTCACCGGAGCTTTAC 193
Query 221 AAAGCCAGGTCACTCTCGGGAAACACCGAGA-TCTGTCTCTACGTGTGCTTACGGT-G-C 277
|| || || ||||||| |||| ||| |||| | |||||||| || |||||| ||| | |
Sbjct 194 AAGGCTAGATCACTCTTGGGACGCACGGAGAGT-TGTCTCTATGTTTGCTTAAGGTTGAC 252
Query 278 TC-TACTG---GTTATCGCTGGTTTAGCCTCAGCCGTAAACCTGATCAAACCCTAACC-- 331
| | | | || ||||||| | |||| |||| |||||| ||||||||||||||
Sbjct 253 ACCTTTTAAAAGCAATAGCTGGTTCACCCTCTGCCGGAAACCTCATCAAACCCTAACCAG 312
Query 332 TATGAGGAGAG-GAAGTCAAGTGGTTATGCTTTGGCTAGAGTCCCAATTCCCGGTGGTTC 390
|| || || | |||||||||||| |||| |||||| | ||||||||| ||| | | |
Sbjct 313 TAAGAAGAAAAAGAAGTCAAGTGGGTATGTTTTGGCAACAGTCCCAATCCCCCAT--T-C 369
Query 391 TCCTAATGTACGATCTT--CGAG-TCTCGTGGCGGTTGGTTCTGATATCTATAACATTTG 447
|||| || | | ||| | || ||||||||| ||||||||||||||||| |||||| |
Sbjct 370 TCCTCGTGCGC-A-CTTGTC-AGGTCTCGTGGCTGTTGGTTCTGATATCTACAACATTGG 426
Query 448 CGGATCCA------TCAAC-AAAGCGTCCTCC-TCCTCTAGCGTCTCAATTCTGGATTGT 499
||||| || || || ||| || || || ||||||||||||| |||||||||||
Sbjct 427 CGGATGCAGAAAAATCTACGAAA-CG-CCGCCCTCCTCTAGCGTCTGGATTCTGGATTG- 483
Query 500 CA-GTCTCACACGTGGCGGGAGGCTCCAAGCTTGCCGGTGGAGCTAAGTTCA-A-TTTCT 556
|| ||||||||| ||||| ||||||||||||||||||||||||| || | | | |||||
Sbjct 484 CATGTCTCACACATGGCGCGAGGCTCCAAGCTTGCCGGTGGAGCCAA-TG-AGACTTTCT 541
Query 557 GCTAGCGTCCGTGATGGAAA 576
|||||||||| |||||||||
Sbjct 542 GCTAGCGTCCTTGATGGAAA 561
> Ahg492252 jgi|Araly1|492252|fgenesh2_kg.7__1685__AT4G25710.1
Length=1389
Score = 278 bits (150), Expect = 8e-74
Identities = 389/498 (78%), Gaps = 42/498 (8%)
Strand=Plus/Plus
Query 101 CCGTCACTTCCCGATGATGTGCTATTGAGCATCTTCGCACGCGTCTCAAGATTGTACTAT 160
|||||||||||||||||| |||||||| |||| ||||||||||| ||| ||| | ||||
Sbjct 109 CCGTCACTTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAATATTATTCTAT 168
Query 161 CCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACCAGA-GCTTTA 219
|||| |||||||| ||| ||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 169 CCGATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC-GAGGCTTTA 227
Query 220 CAAAGCCAGGTCACTCTCGGGAAACACCGAGA-TCTGTCTCTACGTGTGC-T---TACG- 273
||| ||| ||||||||| ||| || |||| || ||||||| |||||| | || |
Sbjct 228 CAAGGCCCGGTCACTCTTGGGCCGCAGGGAGAGTC-GTCTCTATGTGTGCATAAATATGT 286
Query 274 GTGC-TCT----ACTGGTTATCGCTGGTTTAGCCTCAGCCGTAAACCTGATC--A-AACC 325
| | | | || || | ||||||| | |||| |||| |||||||| | | ||||
Sbjct 287 ATCCTTATAAAAAC-GGCCCTAGCTGGTTCACCCTCTGCCGGAAACCTGACCGAACAACC 345
Query 326 -CTAACCT-ATGAGGAG-AGG--AAGTCAAGTGGTTATGCT-TTGGCTAGAGTCCCAATT 379
| | | || ||||| ||| |||||||||||||||| | ||||| ||||| ||||||
Sbjct 346 AGT-A-GTAATAAGGAGCAGGACAAGTCAAGTGGTTATG-TCTTGGCAAGAGTTCCAATT 402
Query 380 CCCGGTGGTTCTCC-TAATGT-ACGATCTTCGAGTCTCGTGGCGGTTGGTTCTGATATCT 437
||| |||||| | | | | ||| | || |||||||||||||||||||||||||
Sbjct 403 CCC---CATTCTCCTTTGTCTCAGGATAAT--AGCCTCGTGGCGGTTGGTTCTGATATCT 457
Query 438 ATAACATTTGCG-GATCC-AT-CAACAAAGCGTCCTCCTCCTCTAGCGTCTCAATTCTGG 494
|||||||| ||| | ||| || | | ||||| ||||||||||| |||| |||||||
Sbjct 458 ATAACATTGGCGTGGTCCGATCCTGCGAAGCG---TCCTCCTCTAGTGTCTGGATTCTGG 514
Query 495 ATTGTCAGTCTCACACGTGGCGGGAGGCTCCAAGCTTGCCGGTGGAGCTAAGTT-CAATT 553
|||| | ||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct 515 ATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTAT-TTACAGTT 573
Query 554 TCTGCTAGCGTCCGTGAT 571
||| ||| |||| ||||
Sbjct 574 ACTGTTAGTGTCCTTGAT 591
> Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828
Length=879
Score = 165 bits (89), Expect = 6e-40
Identities = 141/165 (85%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 101 CCGTCACTTCCCGATGATGTGCTATTGAGCAT-CTTCGCACGCGTCTCAAGATTGTACTA 159
|||||||||||||||||| || |||||||| | | ||||||| ||||||| |||||| ||
Sbjct 25 CCGTCACTTCCCGATGATTTGATATTGAGC-TGCGTCGCACGGGTCTCAAAATTGTATTA 83
Query 160 TCCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGCTTTA 219
|||||||||||| | ||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 84 TCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGATTTA 143
Query 220 CAA-AGCCAGGTCACTCTCGGGAAA-CACCGAGA-TCTGTCTCTA 261
||| | || | ||||||| || | |||||||| | ||||||||
Sbjct 144 CAAGACCC-GATCACTCTTGG-ACCGCACCGAGAGT-TGTCTCTA 185
> Ahg921494 jgi|Araly1|921494|scaffold_102775.1
Length=1283
Score = 97.1 bits (52), Expect = 2e-19
Identities = 269/369 (73%), Gaps = 33/369 (9%)
Strand=Plus/Plus
Query 623 GTGTTTGCTTACAATTCCAAGGAAGGTAGATGGGATCACCTAGTTGGACTTGGGGCGGGT 682
||| ||||||||||||||||||||||||||||||| || ||||| | | |||
Sbjct 840 GTGGTTGCTTACAATTCCAAGGAAGGTAGATGGGA-CA--GAGTTGAAAAACAGATTGGT 896
Query 683 AGTTTTA-TGCTTCCAGATTCTTATTGCGTGATAGATAACGTTTCGTACTC-TG-TATCC 739
|| | || | || || | ||||| |||| |||| |||| |||| |||||| || || |
Sbjct 897 AGGTATATTTATT-CAAAATCTTACTGCGAGATACATAATGTTTTGTACTCTTGCGAT-C 954
Query 740 GATGG-AATGTTCAG-ATGGTATGACACTGAGGTAAGAAG-GTGGAAAGATTTGAGGGGT 796
| || ||| || | |||||||||||||||| ||| || |||| ||| |||| ||||
Sbjct 955 -ACGGAAAT-ATC-GTTTGGTATGACACTGAGGCAAG-AGATTGGAGAGAGTTGAAGGGT 1010
Query 797 TT-GTTTCAGCTACCTAAGTTCTCTGCGGGT--GCTTGTG-TTATATTGGCTGATTATGG 852
|| || | |||||| ||||| || | | | | | | | |||||||||||||||
Sbjct 1011 TTGGTAGGA-CTACCTGAGTTCCCTTCTGATAAAAAAGGGATAAGATTGGCTGATTATGG 1069
Query 853 TGGAAAGATGGCGGTCTTGTGGGATC-A--ATTG-CCTTATCATCAT---GGCTTT-CAT 904
||||||||||||||| |||||| || | | || |||| | || | ||| || |
Sbjct 1070 TGGAAAGATGGCGGTTTTGTGGC-TCGAGGAGTGGCCTTTTAATTTTTACGGCCTTACG- 1127
Query 905 AAGACGATTCAGTGTGCGGTGATTGCGCTTGAAAGGCGCACAAGTTTTGTA-TTTCGGGA 963
|||| |||| |||||| | |||| ||||||||| ||||| |||| || | ||| |||
Sbjct 1128 AAGATGATTTGGTGTGCAGAGATTACGCTTGAAAAGCGCAAAAGTGGTGAAATTTGGGG- 1186
Query 964 GAAAAGTTG 972
|||| ||||
Sbjct 1187 GAAA-GTTG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5