BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08860.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928536 jgi|Araly1|928536|scaffold_300993.1 2242 0.0
> Ahg928536 jgi|Araly1|928536|scaffold_300993.1
Length=1481
Score = 2242 bits (1214), Expect = 0.0
Identities = 1402/1492 (94%), Gaps = 16/1492 (1%)
Strand=Plus/Plus
Query 52 GTTTTAACGTCGGTGAAAAAATGCGGAAGTTAACGGCGGTTAATTCACTACTGAAACGGA 111
||||||||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 1 GTTTTAACGGCGGTGAAAAGATGCGGAGGTTAACGGCTATTAATTCACTACTGAAACGGA 60
Query 112 ACAATTATCTTCTTCCGCGCCATGGCTCCTCACAAACAGCAGCTCAGAGAACATCCTCCG 171
||||| ||||||||| ||| ||||||| ||| || |||| ||||||||||||| ||||||
Sbjct 61 ACAATCATCTTCTTCAGCGTCATGGCTTCTCTCAGACAGTAGCTCAGAGAACAACCTCCG 120
Query 172 TCCGCGAGACCGAGACCGAAACAAAACTTCCGAAAATGCCCCCGTTCAATTATTCTCCGC 231
| | |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 121 T----TTG--CGAGACCGAAACAAAAATTCCGAAAATGCCCCCGTTCAGTTATTCTCCGC 174
Query 232 CGCCTTACGACGGTCCATCTACGGCAGAGATCATCGCAAAGCGGCGAGAGTTCCTCAGCC 291
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 175 CGCCTTACGACGGTCCATCCACGGCAGAGATCATCGCAAAACGGCGAGAGTTCCTCAGCC 234
Query 292 CCGCTCTTTTTCACTTCTACAACACACCCTTAAACATTGTGGAGGCAAAGATGCAGTATG 351
| ||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 235 CAGCTCTGTTTCACTTCTACAACACAGCCTTAAACATTGTGGAGGGAAAGAGGCAGTATG 294
Query 352 TGTTCGACGAGAATGGACGTCGATATTTAGATGCCTTTGGAGGAATAGCGACGGTTTCGT 411
|||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 295 TGTTTGACGAGAATGGACGGCGATATTTAGATGCCTTCGGAGGAATAGCTACGGTTTCCT 354
Query 412 GCGGCCATTGCCACCCGGAAGTAGTTAACTCCGTCGTCAAACAGTTGAAA-CTTATT-AA 469
|||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||| ||
Sbjct 355 GCGGCCATAGCCACCCGGAAGTAGTTAACTCCGTCATCAAACAGTT-AAAGCTTATTCAA 413
Query 470 CCACTCCACCATC-CTTTACCTTAACCACACCATCTCCGATTTCGCTGAAGCCCTTGTCT 528
|||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 414 -CACTCCACCA-CGCTTTACCTTAACCACACCATCTCCGATTTCGCTGAAGCCCTAGTCT 471
Query 529 CCACTCTTCCGGGAGATCTCAAGGTGGTGTTTTTCACGAATTCGGGTACGGAGGCGAATG 588
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CCAATCTTCCCGGAGATCTCAAGGTGGTGTTTTTCACGAATTCGGGTACGGAGGCGAATG 531
Query 589 AACTTGCGATGATGATGGCTAGACTGTATACAGGATGTAACGACATCGTTTCGCTTAGGA 648
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGCTTGCGATGATGATGGCTAGACTGTATACAGGATGTAACGACATCGTTTCGCTTAGGA 591
Query 649 ACTCTTATCATGGAAACGCAGCTGCTACTATGGGTGCCACTGCTCAGTCCAACTGGAAAT 708
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 592 ACTCTTATCATGGAAACGCAGCTGCTACTATGGGAGCCACTGCTCAGTCCAACTGGAAAT 651
Query 709 TCAACGTCGTTCAGAGTGGAGTTCATCACGCCATAAATCCAGATCCTTACAGAGGAATAT 768
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 652 TTAACGTCGTTCAGAGTGGAGTTCACCACGCCATAAATCCAGATCCATACAGAGGAATAT 711
Query 769 TTGGATCCGACGGTGAAAAGTACGCGAGTGATGTACACGATCTTATCCAATTCGGAACGT 828
||||||||||||||| ||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 712 TTGGATCCGACGGTGGAAAGTACGCAAGTGATGTACATGACCTTATCCAATTCGGAACTT 771
Query 829 CCGGTCAAGTCGCCGGTTTCATTGGCGAATCAATCCAGGGTGTTGGAGGAATCGTAGAGC 888
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 772 CCGGTCAAGTCGCCGGTTTCATTGGCGAATCAATCCAGGGAGTTGGAGGAATAGTAGAGC 831
Query 889 TTGCTCCCGGATACTTACCGGCGGCT-TACGACATCGTGAGGAAAGCCGGAGGAGTTTGC 947
||||||| |||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 832 TTGCTCCGGGATACTTACCGGCGG-TGTATAACATCGTGAGGAAAGCCGGAGGAGTTTGC 890
Query 948 ATCGCCGATGAAGTCCAATCCGGTTTTGCTCGTACCGGAACCCATTTCTGGGGGTTTCAA 1007
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 891 ATCGCCGATGAAGTCCAATCCGGTTTCGCTCGTACCGGTACCCATTTCTGGGGGTTTCAA 950
Query 1008 TCCCATGGTGTTATCCCTGACATCGTCACCATGGCCAAGGGGATCGGTAACGGTATACCA 1067
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 951 TCCCATGGTGTTATCCCTGACATCGTCACCATGGCCAAGGGGATCGGGAACGGTATACCA 1010
Query 1068 CTTGGAGCGGTTGTGACGACACCGGAGATTGCCGGCGTTTTAAGCCGTCGGAGTTACTTT 1127
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1011 CTTGGAGCGGTTGTGACGACACCGGAGATCGCCGGCGTTTTAAGCCGCCGGAGTTACTTT 1070
Query 1128 AATACTTTCGGCGGAAATCCAATGTGCACGGCCGCAGGACACGCAGTACTTAGAGTCCTT 1187
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1071 AATACTTTCGGCGGAAACCCAATGTGCACGGCCGCAGGACATGCAGTACTAAGAGTCATT 1130
Query 1188 CACGAAGAGAAGCTCCAAGAGAATGCTAACCTCGTTGGCTCACATCTTAAACGTAGACTT 1247
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1131 AACGAAGAGAAGCTCCAAGAGAATGCTAACCTCGTTGGCTCACATCTCAAACGTAGACTT 1190
Query 1248 ACGCTACTCAAAAACAAATACGAACTCATTGGAGACGTGAGAGGGAGAGGATTGATGCTA 1307
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 1191 ACGCTACTCAAAAACAAACATGAACTCATTGGAGACGTGAGAGGAAGAGGATTGATGCTA 1250
Query 1308 GGAGTTGAGTTTGTCAAAGACCGCGACTTAAAAACTCCTGC-AAAAGCAGAGACCCTTCA 1366
||||||||| |||||| |||| | ||||||||||||||||| |||| | |||||||||||
Sbjct 1251 GGAGTTGAGCTTGTCACAGACGGTGACTTAAAAACTCCTGCTAAAA-CTGAGACCCTTCA 1309
Query 1367 TTTAATGGATCAAATGAAAGAAATGGGAGTGTTGGTGGGGAAAGGTGGATTCTATGGGAA 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TTTAATGGATCAAATGAAAGAAATGGGAGTGTTGGTGGGGAAAGGTGGATTCTATGGGAA 1369
Query 1427 TGTCTTCAGAATCACTCCTCCTCTCTGCTTCACCCTCTCCGACGCTGATTTCCTCGTGGA 1486
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1370 CGTCTTCAGAATCACTCCTCCTCTCTGTTTCACCCTCTTCGACGCTGATTTCCTCGTGGA 1429
Query 1487 TGTGATGGATCACGCCATGTCCAAGATGTGATTTACTATCTTTATCCGTTCT 1538
||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1430 TGTGATGGATCACGCCATGTCCAAGATGTGATTTACTATATTTACCCGATCT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5