BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08870.1
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478190 jgi|Araly1|478190|fgenesh2_kg.3__891__AT3G08870.1 3192 0.0
Ahg486919 jgi|Araly1|486919|fgenesh2_kg.6__53__AT5G01560.1 778 0.0
Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1 52.8 1e-05
> Ahg478190 jgi|Araly1|478190|fgenesh2_kg.3__891__AT3G08870.1
Length=2152
Score = 3192 bits (1728), Expect = 0.0
Identities = 2022/2163 (93%), Gaps = 23/2163 (1%)
Strand=Plus/Plus
Query 1 ATGGGCATAGCAAGATCCATAAACTCGTTCATGTTCTTCTTCTTTCTAATGATATTATCA 60
|||||||||||||||||||||| |||||||||||||||| | ||| || ||| ||||
Sbjct 1 ATGGGCATAGCAAGATCCATAACCTCGTTCATGTTCTTC--C--TCT--TGGTATCATCA 54
Query 61 AACGCT-TCTAA-AAGCTCTGTTCTTGCTGAGGCCACGACAGCGAAATTCACATTCATAG 118
||| || | ||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 55 AACTCTGT-TAACAA-TTCTGTTCTTGCTCAGGCCACGACAGCGAAATTCACATTCATAG 112
Query 119 GTTTCAAAGAAAACCAAACGGATATTCAAACAGAAGGAGCTTCCACAATCCAACACGACA 178
||||||||| ||||||||| || |||||||||||||||||||| || ||||||| |||||
Sbjct 113 GTTTCAAAGGAAACCAAACAGAAATTCAAACAGAAGGAGCTTCGACGATCCAACTCGACA 172
Query 179 ATGATCTTCTTAGACTAACTAATCGGAAACAAAACGTCACTGGAACAGCGTTTTACCGCA 238
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 173 ATGATCTTCTGAGACTAACTAATCGGAACCAAAACGTCACTGGAACCGCGTTTTACCGCA 232
Query 239 AACCAATCAGATTGCGTGAGTTAACCAATTCCTCCGATATCAAAGTTTGTTCCTTTAGCA 298
|||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 233 AACCGATTAGATTGCGTGACTTCACCAATTCCTCCGATATCAAAGTCTGTTCCTTTAGCA 292
Query 299 CTTCTTTCGTCTTCGTCATACTCCCTTCAAGTCCCGGCAA-CGGTGGTTTTGGTTTCACG 357
|||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 293 CTTCTTTCGTGTTCGTCATAATCCCTTCAAGTCCCGG-AACCGGTGGTTTTGGTTTCACG 351
Query 358 TTCACACTTTCTCCGACCCCGAATCGTCCAGGAGCCGAATCTGCACAGTATTTGGGTCTG 417
||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||
Sbjct 352 TTCACACTTTCTCCGACCCCGAATCGTCCTGGAGCCAAATCTGCACAGTACTTGGGGCTT 411
Query 418 TTGAACAGAACCAACAACGGTAATCCATCGAATCACGTATTCGCAGTGGAATTCGACACG 477
||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
Sbjct 412 TTGAACAGAACCAACAACGGTGATCCATCGAATCACGTATTCGCTGTTGAATTCGACATG 471
Query 478 GTACAAGGATTTAAAGACGGCGCAGACAGAAGAGGAAACCACATCGGTCTTAATTTCAAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTACAAGGATTTAAAGACGGCGCAGACAGAAGAGGAAACCACATCGGTCTTAATTTCAAC 531
Query 538 AACCTCTCCTCCAATGTACAAGAACCACTCATTTACTACGACACAGAGGATCGAAAGGAA 597
|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 532 AACCTCTCCTCCGATGTACAAGAGCCACTCATTTATTACGACACAGAGGATCGAAAAGAA 591
Query 598 GATTTTCAGCTCGAGAGCGGCGAACCAATCCGAGTTCTTATCGATTACGACGGATCCAGC 657
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 GATTTTCAGCTCGAGAGCGGCGAACCAATCCGAGTTCTTGTCGATTACGACGGATCCAGC 651
Query 658 GAAACCTTAAACGTTACAATCTATCCGACGAGATTAGAGTTTAAACCCAAGAAGCCTCTA 717
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 652 GAAACCTTAAACGTCACAATCTATCCGACGAGATTAGAGTTTAAACCCAAAAAGCCCCTG 711
Query 718 ATCTCGCGACGAGTTTCAGAGCTGTCGGAGATTGTGAAGGATGAAATGTACGTCGGATTC 777
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 ATCTCGCGGCGAGTTTCAGAGCTGTCGGAGATTGTGGAGGATGAAATGTACGTCGGATTC 771
Query 778 ACCGCCGCGACTGGAAAAGACCAGTCGAGTGCTCACTATGTAATGGGTTGGAGTTTTTCA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ACCGCCGCGACTGGAAAAGACCAGTCGAGTGCTCACTATGTAATGGGTTGGAGTTTTTCA 831
Query 838 AGCTGCGGAGAAAATCCAATGGCGGATTGGCTCGAGATCTCGCGGCTTCCTCCTCCACCT 897
||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 832 AGCTGTGGAGAAAATCCAATGGCGGATTGGCTCGATCCCTCGAAGCTTCCTCTTCCACCT 891
Query 898 CGCTTGAGTAACAAGAAAGGTTACAATTCTCAAGTCATTGTTTTGATTGTTGCTTTATCG 957
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 892 CGCTTGAGTAACAAGAAAGGTTACGATTCTCAAGTCATTGCTTTGATTGTTGCTTTATCG 951
Query 958 ATCGTCACACTGGTCTTGCTTGTGTTACTATTTATATTTGTGATGTACAAAAGGCGAATC 1017
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 952 ATCGTCACATTGGTCTTGCTTGTGTTACTGTTTATATTTGTGATGTACAAAAGGCGAATC 1011
Query 1018 CAAGAAGAAGATACTCTAGAGGATTGGGAGATTGATTATCCTCATAGGTTTAGATACAGA 1077
||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1012 CAAGAAGAAGATATTCTAGAGGACTGGGAGATTGATTATCCTCATAGATTCAGATACAGA 1071
Query 1078 GATCTCTACTTAGCAACGAAGAAATTCAAAGAGAGTGAGATTATCGGTACTGGAGGATTT 1137
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1072 GATCTCTACTTAGCAACGAAGAAATTCAAAGAGAGTGAGATCATCGGTACCGGAGGATTT 1131
Query 1138 GGAATCGTTTACAGAGGAAATCTATCTTCTTCGGGTCCAATCGCAGTGAAGAAGATAACC 1197
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1132 GGAATCGTTTACAGAGGAAATCTATCTTCCTCGGGTCCAATCGCAGTGAAGAAGATTACT 1191
Query 1198 TCAAATAGCTTACAAGGTGTTCGAGAATTTATGGCAGAGATCGAGAGTTTAGGAAGATTA 1257
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1192 TCAAATAGCTTACATGGTGTTCGAGAATTTGTGGCAGAGATCGAGAGTTTAGGAAGATTA 1251
Query 1258 GGTCATAAGAACCTCGTGAATCTTCAAGGATGGTGCAAACACAAGAACGAGCTCTTGTTA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GGTCATAAGAACCTCGTGAATCTTCAAGGATGGTGCAAACACAAGAACGAGCTCTTGTTA 1311
Query 1318 ATTTACGATTATATACCCAACGGAAGTCTCGACTCGTTGCTGTACCAAACGCCGAGAAGA 1377
|||||||||||||| ||||||||||| || ||| || |||||||| ||||||||||||||
Sbjct 1312 ATTTACGATTATATCCCCAACGGAAGCCTTGACGCGCTGCTGTACAAAACGCCGAGAAGA 1371
Query 1378 AACGGCATCGTGTTGCCGTGGGACGTGCGTTTCGAGATCATAAAGGGAATCGCGTCGGGA 1437
|||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1372 AACGGCGTTGTGTTGCCGTGGGACGTGCGTTTCCAGATCATCAAGGGAATCGCGTCGGGA 1431
Query 1438 CTGTTGTACCTTCATGAGGAATGGGAACAGAT-CGTGGTTCATAGAGACGTGAAACCGAG 1496
|||||||| |||||||| ||||||||||| || | ||||||||||||| |||||| ||||
Sbjct 1432 CTGTTGTATCTTCATGAAGAATGGGAACAAATTC-TGGTTCATAGAGATGTGAAAGCGAG 1490
Query 1497 CAATGTTCTTATTGATGAAGATATGAACGCTAAATTAGGCGATTTTGGACTCGCGAGGCT 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1491 CAATGTTCTTATTGATGAAGATATGAACGCTAAATTAGGCGATTTTGGACTCGCTAGGCT 1550
Query 1557 TTATGAACGCGGAACGTTAACGCAGACCACGAAAATCGTTGGCACTTTAGGGTACATGGC 1616
||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1551 TTACGAACGCGGAACCTTAACGCAGACCACGAAAGTCGTTGGGACTTTAGGGTACATGGC 1610
Query 1617 GCCTGAGCTCACACGTAACGGTAAAGGCTCAACCGCGTCTGACGTTTTCGCGTTTGGCGT 1676
||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 1611 ACCTGAGCTCACACGTAACGGTAAAGGCTCGACAGCGTCTGATGTTTTTGCGTTTGGCGT 1670
Query 1677 TTTGTTGTTAGAAATAGTGTGTGGGAATAAACCAACGAATGCAGAGAACTTCTTCTTAGC 1736
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1671 TTTATTGTTGGAAATAGTGTGTGGGAATAAACCAACGAACGCAGAGAACTTCTTCTTAGC 1730
Query 1737 TGATTGGGTAATGGAATTTCATACTAATGGTGGAATCCTTTGCGTCGTGGATCAGAATCT 1796
||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||| ||
Sbjct 1731 TGATTGGGTAATGGAGTTTCACACTAATGGTGGAATCCTTAGCGCCGTGGATCAGAAACT 1790
Query 1797 CGGGTCTAGTTTCAATGGCAGAGAGGCTAAACTAGCTCTTGTTGTGGGGTTACTATGTTG 1856
||| |||||||| |||||||||||||||||| |||||||| ||||||| ||||| |||||
Sbjct 1791 CGGATCTAGTTTTAATGGCAGAGAGGCTAAATTAGCTCTTATTGTGGGATTACTCTGTTG 1850
Query 1857 CCATCAGAAACCAAAATTTAGGCCATCGATGAGAATGGTGCTTAGATATTTGAATGGTGA 1916
|||||||||||| | || | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1851 CCATCAGAAACCGACATATCGGCCATCGATGAGAATGGTGCTTAGATATCTGAATGGTGA 1910
Query 1917 AGAGAATGTTCCACAGATTGATGAAAATTGGGGATTCTC-GGATTCTTCGAGAGACGATC 1975
||||||||||||||||||||||| |||||||||||| || || |||||| ||||||||||
Sbjct 1911 AGAGAATGTTCCACAGATTGATGGAAATTGGGGATT-TCCGGGTTCTTCAAGAGACGATC 1969
Query 1976 ATAAATCGAATGTTGTAGGTTATGTTTCGTCTGATAGAGCCTCGAGCTCGAATACTTTTT 2035
|||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1970 TTAAAACGAATGTGGTAGGTTATGTTTCGTCCGATAGAGCCTCGAGCTCGAATACTTTTT 2029
Query 2036 CGTCTTTCTCCAATGTTTCTTCAAGCTCTATCGTTAGTGGTAGATAGTTTCAT--A--GC 2091
||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2030 CGTCTTTCTCCGAGGTTTCTTCAAGCTCTATCGTTAGTGGTAGATAGTTTCATTCATAGC 2089
Query 2092 ACTTTTAGCATAGCTTATTTATTTTCTAGAAACAGAACATTTTGTATGTTTTTACTATTT 2151
|||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2090 ACTTTTAGCATAGC--ATT-ATTTTCTAGAAACAGAACATTTTGTATGTATTTACTATTT 2146
Query 2152 ATG 2154
|||
Sbjct 2147 ATG 2149
> Ahg486919 jgi|Araly1|486919|fgenesh2_kg.6__53__AT5G01560.1
Length=2299
Score = 778 bits (421), Expect = 0.0
Identities = 1180/1529 (77%), Gaps = 121/1529 (8%)
Strand=Plus/Plus
Query 283 GTTTGTTCCTTTAGCACTTCTTTCGTCTTCGTCATACTCCCTTCAAG-TC--CCGGCAAC 339
||| |||||||||||||||||||||||||||| | | |||||||||| || | |||||
Sbjct 515 GTTCGTTCCTTTAGCACTTCTTTCGTCTTCGT-A-A-TCCCTTCAAGCTCAACAAGCAAC 571
Query 340 GGTGGTTTTGGTTTCACGTTCACACTTTCTCCGACCCCGAATCGTCCAGGA-GCCGAAT- 397
|| |||||||| ||||| |||||||| ||||| ||||| || ||| || || || | ||
Sbjct 572 GGAGGTTTTGGCTTCACATTCACACTCTCTCCAACCCCAAACCGTACA-GACGCAG-ATC 629
Query 398 CTGCA-CAGTAT-TTGGGTCTGT-TGAACAG-AACCAACAACGGTAA-TCCATCGAATCA 452
| | | |||| | ||||| || | | ||| | || ||| |||| || || | | |||||
Sbjct 630 CCG-AGCAGT-TCTTGGGGCT-TCTCAAC-GAAAGAAACGACGGGAATTCAAGC-AATCA 684
Query 453 CGTATTCGCAGTGGAATTCGACACGGTACAAGGATTTAAAGACGGCGCAGA-CAGAAGAG 511
||| || || |||||||||||||||||||||||||| |||||||| || | | ||| ||
Sbjct 685 CGTTTTTGCTGTGGAATTCGACACGGTACAAGGATTCAAAGACGGTACAAATC-GAATAG 743
Query 512 GAAACCACATCGGTCTTAATTTCAACAACCTCTCCTCCA-ATGTACAAGAACCACTCATT 570
| |||||||||||||| |||||||||| ||||| || | |||| |||||||| | |
Sbjct 744 GCAACCACATCGGTCTAAATTTCAACAGTCTCTCTTC-AGATGTCCAAGAACCGGTGGCT 802
Query 571 TACTACGACA-CAGAGGAT---C-GAAAGGAAGATTTTCAGCTCGAGAGCGGCGAACCAA 625
|| ||| ||| || | ||| | ||||| | || || || || | ||||||||| ||||
Sbjct 803 TATTACAACAACA-ACGATAGTCAGAAAG-AGGAATTCCAACTGGTGAGCGGCGAGCCAA 860
Query 626 TCCGAGTTCTTATCG-ATTA-CGACGGATCCAGCG-AAAC-CTTAAACGTTACAATCTAT 681
||| ||| ||| | | |||| | ||||| ||| | ||| ||||| | | || | ||
Sbjct 861 TCCAAGT-CTTCTTGGATTATC-ACGGA-CCAACCCAAATGCTTAACC-TCACTGTTTAC 916
Query 682 CCGACGAGATTAGAGTT-TAAACCCAAGAAGCCTCTA-ATCTCGCGACGAGTTTC-AGAG 738
|| || ||| | | | | |||||| ||||| || || ||||| ||| ||| ||| | |
Sbjct 917 CCAACCAGACTGG-GATATAAACC-AAGAATCCCCTTGATCTCACGA-GAGGTTCCAAAA 973
Query 739 CTGTCGGAGATTGTGA-AGGATGAAATGTACGTCGGATTCACCGCCGCGACTGGAA-A-A 795
||||| || |||||| || ||||||||| |||||||||||| || |||||||| | | |
Sbjct 974 CTGTCAGATATTGTGGTAG-ATGAAATGTTCGTCGGATTCACAGCAGCGACTGGGAGACA 1032
Query 796 -G-ACCAGTCGAGTGCTCACTATGTAATGGGTTGGAGTTTTTCAAGCTGCGGAGAAAATC 853
| || | ||||||||||| ||||| |||||||||||||| ||||| |||||||| |||
Sbjct 1033 CGGACAA-TCGAGTGCTCATTATGTGATGGGTTGGAGTTTCGCAAGCGGCGGAGAACATC 1091
Query 854 CAATGGCGGAT-TGGCTCGAGATCTCGCGGCTTCCTCCTCCACCTCGCT--TGAGTA-AC 909
|| | || | | || ||||| |||| | ||||||||||| |||| | | || | |
Sbjct 1092 CACTTGCAGCTATG-CTCGACCTCTCCCAACTTCCTCCTCCGCCTC-CAAATAAGGAGAA 1149
Query 910 -AAGAAAGGTTACAATTCTCAAG-TCATTGTTTTGATTGTTGCTTTATCGA-TCGTCACA 966
|||| ||| |||||| | ||| |||| | | |||| || |||||||||| | || | |
Sbjct 1150 GAAGAGAGGCTACAATGGT-AAGGTCATCGCTCTGATCGTGGCTTTATCGACT-GTTATA 1207
Query 967 CTGG-TCTTGCTTG-TGTTACTATTTATATTTGTGATGTACAAAAGGCGAATCCAAG-AA 1023
| | || || ||| |||| | ||| | || |||||||||||| |||||| || | ||
Sbjct 1208 -TCGATCATG-TTGGTGTTGTTGTTTCTCTTCATGATGTACAAAAAGCGAATGCA-GCAA 1264
Query 1024 GAAGATACTCTAGAGGATTGGGAGATTGATTATCCTCATAGGTTTAGATACAGAGATCTC 1083
||||| | |||||| |||||||| || ||| ||||||| || ||| |||||||||| |||
Sbjct 1265 GAAGAGATTCTAGAAGATTGGGAAATCGATCATCCTCACAGATTTCGATACAGAGACCTC 1324
Query 1084 TA--CTTAGCAAC-GAAGAAATTCAAAGAGAGT-GAGATTATCGGTACTGGAGGATTTGG 1139
|| || || || || | | ||||| |||| | | |||| |||| || |||||||| ||
Sbjct 1325 TATGCT--GCTACTGATGGA-TTCAAGGAGAATCG-GATTGTCGGAACCGGAGGATTCGG 1380
Query 1140 AATCGTTTACAGAGGAAA--TCT-ATCTTCTTCGGGTC--CAA-TCGCAGTGAAGAAGAT 1193
| | |||||||||||||| ||| ||| ||||| | ||| ||||||||||||||||
Sbjct 1381 AGTTGTTTACAGAGGAAACATCTCATCATCTTCCTCTGAACAAATCGCAGTGAAGAAGAT 1440
Query 1194 AACCTCA-AATAGCTTACAAGGTGTTCGAGAATTTATGGCAGAGATCGAGAGTTTAGGAA 1252
||| || |||||| | ||||||||||||||||| | |||||||| |||||||| |||
Sbjct 1441 AAC-TCCGAATAGCATGCAAGGTGTTCGAGAATTCGTCGCAGAGATAGAGAGTTTGGGAC 1499
Query 1253 GATTA-GGTCATAAGAACCTCGTGAATCTTCAAGGATGGTGCAAACACAAGAA-CGAGCT 1310
||||| || |||||||| || ||||| || ||||||||||| ||||||| ||| ||| ||
Sbjct 1500 GATTAAGG-CATAAGAATCTGGTGAACCTCCAAGGATGGTGTAAACACA-GAAACGATCT 1557
Query 1311 CTTGTTAATTTACGATTATATACCCAACGGAAGTCTC-GACTCGTTGCTGTACC--AAAC 1367
|||||| |||||||||||||||||||||||||| || |||||| |||| ||| ||||
Sbjct 1558 CTTGTTGATTTACGATTATATACCCAACGGAAG-CTTAGACTCGCTGCTCTACAGTAAAC 1616
Query 1368 GCCGAGAAGAAACGGCATCG-TGTTGCCGTGGGACGTGCGTTT-CGAGATCATAA-AGGG 1424
| |||||||| |||| || | ||| ||||| ||| |||||| | ||||| | |||
Sbjct 1617 -C-GAGAAGAAGCGGCG-CGGTTTTGTCGTGGAACGCGCGTTTTC-AGATCGCCAGAGG- 1671
Query 1425 AATCGCGTCGGGACTGTTGTACCTTCATGAGGAATGGGAACAGATCGTGGTTCATAGAGA 1484
||||||||| || ||||||| || || |||||||||||| |||| ||| |||| |||||
Sbjct 1672 AATCGCGTCTGGTTTGTTGTATCTACACGAGGAATGGGAAAAGATTGTGATTCACAGAGA 1731
Query 1485 CGTGAAACCGAGCAATGTTCTT-ATTGATGAAGATATGAACGCTAAATTAGGCGATTTTG 1543
||||||||| ||||| ||| || ||||| || ||||||||| ||| ||| || ||||| |
Sbjct 1732 CGTGAAACCTAGCAACGTT-TTGATTGACGACGATATGAACCCTAGATTGGGAGATTTCG 1790
Query 1544 GACTCGCGAGGCTTTATGAACGCGGAACGTTAA-CGCAGA-CCAC-GAAAATCGTTGGCA 1600
| || ||||||||||| ||||||||| | | || ||| || |||| | | |||| ||||
Sbjct 1791 GGCTAGCGAGGCTTTACGAACGCGGATC-TCAATCGC-GAACCACCGTAG-TCGTCGGCA 1847
Query 1601 CT-TTAGGGTACATGGCGCCTGAGCTCA-CACGTAACGGTAAAGGC-TCAACCGCGTCTG 1657
| || ||||| |||||||| ||||| | | || ||||| ||| | ||| | || || |
Sbjct 1848 CGATT-GGGTATATGGCGCCGGAGCT-AGCCCGCAACGG-AAACTCCTCATCAGCTTCCG 1904
Query 1658 ACGTTTTCGCGTTTGGCGTTTTGTTGTTAGAAATAGTGTGTGGGA-ATAAACCAACGAA- 1715
||||||||||||||||||||||| |||||||||| || | |||| | ||||| ||| |
Sbjct 1905 ACGTTTTCGCGTTTGGCGTTTTGCTGTTAGAAATCGTCTCCGGGAGA-AAACCGACGGAC 1963
Query 1716 TGCAGAGAACTTCTTCT-TAGCTGATTGG 1743
| | | || |||||| | |||| ||||||
Sbjct 1964 T-CTGGGACCTTCTT-TATAGCGGATTGG 1990
> Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1
Length=2411
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1528 AAATTAGGCGATTTTGGACTCGCGAGGC 1555
||||||||||||||||||||||||||||
Sbjct 1647 AAATTAGGCGATTTTGGACTCGCGAGGC 1674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83836629245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5