BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G08880.1 Length=1002 Score E Sequences producing significant alignments: (Bits) Value Ahg478191 jgi|Araly1|478191|fgenesh2_kg.3__892__AT3G08880.1 586 1e-166 > Ahg478191 jgi|Araly1|478191|fgenesh2_kg.3__892__AT3G08880.1 Length=868 Score = 586 bits (317), Expect = 1e-166 Identities = 443/498 (89%), Gaps = 32/498 (6%) Strand=Plus/Plus Query 375 ATTGTAAGACGAAACTCTATGCTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATATTG 434 ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||| Sbjct 399 ATTGTAAGAAGAAACTCGATGTTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATGTTG 458 Query 435 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGACGAAGAGATGGAACGGGAGT 494 ||||||||||||||||||||||||||||||||||||||||| || | | | || Sbjct 459 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGAC---GA-A--G-A---GA-- 506 Query 495 TCAAGCTAAAAGACGAGCTTAGACTAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 554 | | || || | || |||||||||||||||||||||||||||||||||||| Sbjct 507 T---G----GAG-CG-G----GA-TAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 552 Query 555 TG-TCATCGATAGATGAACATAAGCAATCTACAAAGAGAAAAGTGAGGGACGACTTGAGA 613 || | |||||| ||||||||||||||||||||||||||||||| | |||||| ||||||| Sbjct 553 TGAT-ATCGATTGATGAACATAAGCAATCTACAAAGAGAAAAGAGCGGGACGGCTTGAGA 611 Query 614 GCTGAGAAAAAGCTATCAATGTATGCTTCTGTCACGAACGTTATACCGGACATTGATGAT 673 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| | Sbjct 612 GCTGAGAAAAAGCTGTCTATGTATGCTTCTGTCACGAAAGTTATACCGGACATTGATGGT 671 Query 674 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGCTAATTGAGAAGTTTCAA 733 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 672 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGGTAATTGAAAAGTTTCAA 731 Query 734 TTCGAGACAAATAAGATGACGGCATACGAGACATGTAACAGTATCTGGAGCATCATAAAC 793 |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 732 TTCGAGACGAATAAGATGACAGCCTACGAGACATGTAACAGTATCTGGAGCATCATAAAC 791 Query 794 AAACAATAAACAT-ACTTGGCACCACTTCATTTGTATGATATAT--GTGTGAGCAGTCTT 850 |||||||| || | | |||||| || |||||||||||||||||| |||||| ||||||| Sbjct 792 AAACAATAGAC-TGATTTGGCATCAGTTCATTTGTATGATATATCTGTGTGATCAGTCTT 850 Query 851 GGTTTTAGCTTAGCAACC 868 |||||||||||||||||| Sbjct 851 GGTTTTAGCTTAGCAACC 868 Score = 351 bits (190), Expect = 4e-96 Identities = 263/296 (89%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 98 TGGTATCAGAAATCTACGATTTTTC-TGGTGAGGGTTTTGA-G-GT-G------TGGAGC 147 ||||||||||||||||||| | | | ||||||||||||||| | || | |||||| Sbjct 61 TGGTATCAGAAATCTACGACTCTCCTTGGTGAGGGTTTTGAGGTGTGGATAATCTGGAGC 120 Query 148 TAGGGCTTTTGCTGCTAGATAGTTGATTTTTCAATTTTCCG---CAG-CAGAAATGGGAA 203 |||||||||| |||||||||||| ||||| ||||||||||| ||| |||||||||||| Sbjct 121 TAGGGCTTTTACTGCTAGATAGTGGATTTATCAATTTTCCGCATCAGACAGAAATGGGAA 180 Query 204 ATGCGTCGGAGAATTTCGATATTGAAGATCTCATGTCTTATGGAGACGATTTGATCAACT 263 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 181 ATGCGTCGGAGAATTTCGATATCGAAGATCTCATGTCTTATGGAGACGATTTGATCAATT 240 Query 264 TATTGAATGTTAAGAATGGTTTTGATATTATATCTCAAAGTTCTGAGCAGTTCAAAGCTC 323 ||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| ||||||| Sbjct 241 TATTGGATGTTAAGAATGGGTTTGATGTGATATCTCAAAGTTTTGAGCAGTTTAAAGCTC 300 Query 324 TCAATTTTGCTTGCCATGAGGATTTCAATCAGATACAAGGCTCTATTGAAGATTGT 379 ||||||| |||||| | | ||||||||||||||||||| ||||||||||||||||| Sbjct 301 TCAATTTCGCTTGCGACGGGGATTTCAATCAGATACAATGCTCTATTGAAGATTGT 356 Score = 89.8 bits (48), Expect = 4e-17 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 12 aaaaaaatcaaaaatcaaaaTTCAGATCTTTCCTCTTCATATCTCCCTCCT 62 ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 51 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37246089909 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5