BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08880.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478191 jgi|Araly1|478191|fgenesh2_kg.3__892__AT3G08880.1 586 1e-166
> Ahg478191 jgi|Araly1|478191|fgenesh2_kg.3__892__AT3G08880.1
Length=868
Score = 586 bits (317), Expect = 1e-166
Identities = 443/498 (89%), Gaps = 32/498 (6%)
Strand=Plus/Plus
Query 375 ATTGTAAGACGAAACTCTATGCTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATATTG 434
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 399 ATTGTAAGAAGAAACTCGATGTTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATGTTG 458
Query 435 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGACGAAGAGATGGAACGGGAGT 494
||||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 459 CGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGAC---GA-A--G-A---GA-- 506
Query 495 TCAAGCTAAAAGACGAGCTTAGACTAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 554
| | || || | || ||||||||||||||||||||||||||||||||||||
Sbjct 507 T---G----GAG-CG-G----GA-TAGTCGCTGATGAACTCAAGGACCTGAATGCTCAAT 552
Query 555 TG-TCATCGATAGATGAACATAAGCAATCTACAAAGAGAAAAGTGAGGGACGACTTGAGA 613
|| | |||||| ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 553 TGAT-ATCGATTGATGAACATAAGCAATCTACAAAGAGAAAAGAGCGGGACGGCTTGAGA 611
Query 614 GCTGAGAAAAAGCTATCAATGTATGCTTCTGTCACGAACGTTATACCGGACATTGATGAT 673
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 612 GCTGAGAAAAAGCTGTCTATGTATGCTTCTGTCACGAAAGTTATACCGGACATTGATGGT 671
Query 674 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGCTAATTGAGAAGTTTCAA 733
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 672 CCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGGTAATTGAAAAGTTTCAA 731
Query 734 TTCGAGACAAATAAGATGACGGCATACGAGACATGTAACAGTATCTGGAGCATCATAAAC 793
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 732 TTCGAGACGAATAAGATGACAGCCTACGAGACATGTAACAGTATCTGGAGCATCATAAAC 791
Query 794 AAACAATAAACAT-ACTTGGCACCACTTCATTTGTATGATATAT--GTGTGAGCAGTCTT 850
|||||||| || | | |||||| || |||||||||||||||||| |||||| |||||||
Sbjct 792 AAACAATAGAC-TGATTTGGCATCAGTTCATTTGTATGATATATCTGTGTGATCAGTCTT 850
Query 851 GGTTTTAGCTTAGCAACC 868
||||||||||||||||||
Sbjct 851 GGTTTTAGCTTAGCAACC 868
Score = 351 bits (190), Expect = 4e-96
Identities = 263/296 (89%), Gaps = 14/296 (5%)
Strand=Plus/Plus
Query 98 TGGTATCAGAAATCTACGATTTTTC-TGGTGAGGGTTTTGA-G-GT-G------TGGAGC 147
||||||||||||||||||| | | | ||||||||||||||| | || | ||||||
Sbjct 61 TGGTATCAGAAATCTACGACTCTCCTTGGTGAGGGTTTTGAGGTGTGGATAATCTGGAGC 120
Query 148 TAGGGCTTTTGCTGCTAGATAGTTGATTTTTCAATTTTCCG---CAG-CAGAAATGGGAA 203
|||||||||| |||||||||||| ||||| ||||||||||| ||| ||||||||||||
Sbjct 121 TAGGGCTTTTACTGCTAGATAGTGGATTTATCAATTTTCCGCATCAGACAGAAATGGGAA 180
Query 204 ATGCGTCGGAGAATTTCGATATTGAAGATCTCATGTCTTATGGAGACGATTTGATCAACT 263
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATGCGTCGGAGAATTTCGATATCGAAGATCTCATGTCTTATGGAGACGATTTGATCAATT 240
Query 264 TATTGAATGTTAAGAATGGTTTTGATATTATATCTCAAAGTTCTGAGCAGTTCAAAGCTC 323
||||| ||||||||||||| |||||| | ||||||||||||| ||||||||| |||||||
Sbjct 241 TATTGGATGTTAAGAATGGGTTTGATGTGATATCTCAAAGTTTTGAGCAGTTTAAAGCTC 300
Query 324 TCAATTTTGCTTGCCATGAGGATTTCAATCAGATACAAGGCTCTATTGAAGATTGT 379
||||||| |||||| | | ||||||||||||||||||| |||||||||||||||||
Sbjct 301 TCAATTTCGCTTGCGACGGGGATTTCAATCAGATACAATGCTCTATTGAAGATTGT 356
Score = 89.8 bits (48), Expect = 4e-17
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 12 aaaaaaatcaaaaatcaaaaTTCAGATCTTTCCTCTTCATATCTCCCTCCT 62
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAAATCAAAAATCAAAATTCAGATCTTTCCTCTTCATATCTCCCTCCT 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5