BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08890.1
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928539 jgi|Araly1|928539|scaffold_300996.1 911 0.0
> Ahg928539 jgi|Araly1|928539|scaffold_300996.1
Length=554
Score = 911 bits (493), Expect = 0.0
Identities = 530/548 (97%), Gaps = 1/548 (0%)
Strand=Plus/Plus
Query 55 GATCTGTGAGAGAGAATGGATCAGATCTTGAACAAGGTAGGCTCGTACTGGTTAGGTAAG 114
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 GAT-TGTGAGAGAGAATGGATCAGATCTTGAACAAGGTAGGCTCGTACTGGTTAGGTAAG 66
Query 115 AAGGCGAACAAGCAGCTCGATTCCGTCGGTGACGATATCAACTCTTTGTCTTCGAGCATC 174
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 67 AAAGCGAACAAGCAGCTCGATTCCGTCGGTGACGATATCAACTCTTTGTCTACGAGCATC 126
Query 175 GAAGGAGGAACAAAATGGTTGGTGAACAAAATCAAAGGAAAAATGCAGAAGCCATTGCCC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GAAGGAGGAACAAAATGGTTGGTGAACAAAATCAAAGGAAAAATGCAGAAGCCATTGCCC 186
Query 235 GAGTTACTAAAGGAGTTTGGTTTGCCTGTGGGGATCTTTCCACGTGATGCAACCAACTAC 294
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 GAGTTACTAAAGGAGTATGGTTTGCCTGTGGGGATCTTTCCACGTGATGCCACCAACTAC 246
Query 295 GAGTTCAATGAACAGACGAGGAAGTTAACTGTCTTTATTCCATCAATCTGCGAAGTTGGT 354
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 247 GAGTTCAATGAACAGACGAGGAAGTTAACCGTCTTTATTCCATCAATCTGCGAAGTTGGC 306
Query 355 TACAAAGATACATCAGTCTTGAGATTCACCACTACAGTTACCGGATTTCTCGAGAAGGGA 414
||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 307 TACAAAGATTCATCAGTCTTGAGATTCACCACAACAGTTACCGGATTTCTAGAGAAAGGA 366
Query 415 AAGCTAGCTGATGTTGAAGGGATGAAGACAAAAGTAATGATATGGGTTAAAGTCACAAGT 474
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 367 AAGCTAGCCGATGTTGAAGGGATGAAGACAAAAGTAATGATTTGGGTTAAAGTCACAAGT 426
Query 475 ATCTCTGCTGATTCTTCAAAGGTACATTTCACGGCAGGGATGAAGAAAAGCAGAAGCCGA 534
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 427 ATTTCTGCTGATTCTTCAAAGGTTCATTTCACAGCAGGGATGAAGAAAAGCAGAAGCCGG 486
Query 535 GATGCTTATGAGGTTTTAAGAGATGGCGTTGAGATTGATAAATTCTAGCTCTGTTTTGCT 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 487 GATGCTTATGAGGTTTTAAGAGATGGCGTTGAGATTGATAAATTCTAGCCCTGTTTTGCT 546
Query 595 GGTAATTC 602
||||||||
Sbjct 547 GGTAATTC 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29545260675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5