BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08900.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708 970 0.0
Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1 717 0.0
Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1 660 0.0
Ahg949616 jgi|Araly1|949616|scaffold_801503.1 438 4e-122
> Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708
Length=1125
Score = 970 bits (525), Expect = 0.0
Identities = 564/583 (97%), Gaps = 2/583 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCAATTGTATTCTTCCGTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCAATTGTATTCTTCCGTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATT 60
Query 61 GTGATACCTACGATTCGAAACCTCGACTTCCTTGAGATGTGGCGACCTTTCTTTGAGCAG 120
|||||||| || ||||||||||| ||||||||| ||||||||||||| |||||||| |||
Sbjct 61 GTGATACCCACCATTCGAAACCTTGACTTCCTTCAGATGTGGCGACCCTTCTTTGAACAG 120
Query 121 TATCATTTGATCATTGTTCAAGATGGTGATCCTTCGAAAGTCATCAACATTCCAGTAGGG 180
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 121 TACCATCTGATCATTGTTCAAGATGGTGATCCTTCGAAAGTCATCAACATTCCAG-AAGG 179
Query 181 TTT-GACTACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCGACTACGAGCTCTACAACAGGAACGACATCAATCGAATCTTGGGTCCCAAGGCCTC 239
Query 240 TTGCATTTCCTTCAAGGACTCTGCTTGTCGTTGCTTCGGTTACATGGTCTCCAAAAAGAA 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 TTGCATTTCCTTCAAGGACTCTGCTTGCCGTTGCTTCGGTTACATGGTCTCCAAAAAGAA 299
Query 300 GTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACAGGGAAAGAGAT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACTGGGAAAGAGAT 359
Query 360 CAATGCGCTTGAGCAGCATATCAAGAACCTCTTATCTCCATCAACTCCGCATTTCTTTAA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CAATGCGCTTGAGCAGCATATCAAGAACCTCTTATCTCCATCAACCCCGCATTTCTTTAA 419
Query 420 CACACTTTATGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTCAGTAT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CACACTTTATGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTTAGTAT 479
Query 480 GCGCGAAGGTGCCATAACCGCGGTCTCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GCGCAAAGGTGCCATAACTGCGGTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGA 539
Query 540 TGCTCCCACTCAGCTTGTGAAACCTCTTGAGAAAAATTCCAGG 582
||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 TGCTCCCACTCAGCTTGTGAAGCCTCTTGAGAAAAATTCCAGG 582
Score = 828 bits (448), Expect = 0.0
Identities = 491/512 (96%), Gaps = 2/512 (0%)
Strand=Plus/Plus
Query 582 GTATGTTGATGCAGTCATGACCATTCCCAAAGGAACTCTTTTTCCTATGTGTGGTATGAA 641
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 GTATGTTGATGCAGTCATGACCATTCCCAAAGGAACACTTTTTCCTATGTGTGGTATGAA 674
Query 642 CCTTGCTTTTGACCGTGAGCTGATTGGTCCGGCTATGTACTTTGGGCTTATGGGTGATGG 701
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||
Sbjct 675 CCTCGCTTTTGACCGTGAGTTGATTGGTCCGGCCATGTACTTTGGGCTTATGGGTGACGG 734
Query 702 ACAGCCAATTGGACGCTATGACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGA 761
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACAGCCAATCGGACGCTATGACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGA 794
Query 762 CCACATGGGATGGGGAGTGAAGACGGGTTTGCCTTACATATGGCACAGCAAAGCCAGCAA 821
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 795 CCATATGGGATGGGGAGTGAAGACGGGTTTGCCTTACAAATGGCACAGCAAAGCCAGCAA 854
Query 822 CCCATTCGTGAACCTGAAAAAGGAATACAACGGAATATTTTGGCAGGAAGAGGCGATTCC 881
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 855 CCCATTCGTGAACCTGAAAAAGGAATACAACGGAATCTTTTGGCAGGAAGAGGCGATACC 914
Query 882 GTTCTTTCAATCCGTGACTCTTCCTAAAGAGTGCACTTCGGTGCAGCAATGCTACCTCGA 941
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 915 GTTCTTTCAATCTGTGACTCTTCCTAAAGAATGCACTTCGGTGCAGCAATGCTACCTCGA 974
Query 942 GCTGGCCAAGCTCGTGAGAGAGAAACTTGGGAAGGTTGATCCTTACTTCATCACACTTGC 1001
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GCTGGCCAAGCTCGTGAAAGAGAAACTTGGGAAGGTTGATCCTTACTTCATCACACTTGC 1034
Query 1002 AACTGGAATGGTCACCTGGATCGAAGCTTGGGAGGAGCTTAACTCCGCGGAGGGAACTGA 1061
||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1035 AACTGGAATGGTCACTTGGATCGAAGCTTGGGAGGAGCTTAACTCCGAGGAGAGAACTGA 1094
Query 1062 GGCTGAGGCACCAAAAGGCAA-AAATTAGTAA 1092
|||| |||||||||| ||||| ||| |||||
Sbjct 1095 GGCTAAGGCACCAAACGGCAATAAAG-AGTAA 1125
> Ahg477458 jgi|Araly1|477458|fgenesh2_kg.3__159__AT3G02230.1
Length=1381
Score = 717 bits (388), Expect = 0.0
Identities = 838/1051 (80%), Gaps = 47/1051 (4%)
Strand=Plus/Plus
Query 18 TTCC-GTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCTACGATTC 76
|||| ||||| | || ||| ||||||| |||||||| || || ||||| || ||||| |
Sbjct 95 TTCCGGTGAATCACATTCCATTGTTGAAGGATGAGCTCGATATCGTGATCCCCACGATCC 154
Query 77 GAAACCTCGACTTCCTTGAGATGTGGCGACC-TTTCTTTGAGCAGTATCATTTGATCATT 135
| |||||||| ||||| ||||||||| | || |||| || ||| || ||| |||| ||
Sbjct 155 GTAACCTCGATTTCCTGGAGATGTGGAGGCCTTTTC-TTCAGCCTTACCATCTGATTATC 213
Query 136 GTTCAAGATGGTGATCCTTCGAAAG-TCATCAACAT-T-CCAGTAGGGTTTGACTACGAG 192
|| |||||||| ||||| ||| ||| ||| | | | || | |||||| || |||||
Sbjct 214 GTCCAAGATGGAGATCCATCG-AAGACCAT-TGC-TGTCCCTGAAGGGTTCGATTACGAA 270
Query 193 CTCTACAACAGGAACGACATCAATCGAAT-CTTGGGTCCCAAGGCCTCTTGCATTTCCTT 251
||||||||||||||||||||||| || || ||| ||||| || || || |||||||||||
Sbjct 271 CTCTACAACAGGAACGACATCAACCGTATCCTT-GGTCCTAAAGCTTCCTGCATTTCCTT 329
Query 252 CAAGGACTCTGCTTGTCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATCTACAC 311
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 330 CAAGGACTCTGCTTGTCGTTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACATCTTCAC 389
Query 312 CATTGATGATGATTGCTTTGTTGCAAAGGATCCAACAGGGAAAGA-GATCAATGCGCTTG 370
||||| || |||||||| ||||| ||||||||| | || |||| | | || || ||||
Sbjct 390 TATTGACGACGATTGCTTCGTTGCCAAGGATCCATCTGGAAAAGCTG-TGAACGCTCTTG 448
Query 371 AGCAGCATATCAAGAACCTCTTATCT-CC-ATCAACTCCGCATTTCTTTAACACACTT-T 427
|||| || ||||||||||| | ||| || ||||||||| |||||| ||||| ||| |
Sbjct 449 AGCAACACATCAAGAACCT-TC-TCTGCCCATCAACTCCATTTTTCTTCAACAC-CTTGT 505
Query 428 ATGATCCATACAGAGATGGGGCAGACTTTGTTCGTGGATACCCTTTCAGTATGCGCGAAG 487
| || |||||| | || || || ||||| || |||||||||||||||||| | || || |
Sbjct 506 ACGACCCATACCGTGAAGGTGCTGACTTCGTCCGTGGATACCCTTTCAGTCTCCGTGAGG 565
Query 488 GTGCCATA-ACCGCGGTCTCTCATGGCCTCTGGCTCAACATTCCTGACTATGATGCTCCC 546
||| | ||||| || ||||| || || ||||||||||| ||||| || ||||| |||
Sbjct 566 GTGTT-TCCACCGCTGTTTCTCACGGTCTGTGGCTCAACATCCCTGATTACGATGC-CCC 623
Query 547 -ACTCAGCTTGTGAAACCTCTTGAGAAA--AATTCCAGGTATGTTGATGCAGTCATGACC 603
|| || |||||||| ||| | |||| || | |||||||| ||||| |||||||||
Sbjct 624 TACCCAACTTGTGAAGCCTAA-G-GAAAGGAACACAAGGTATGTGGATGCTGTCATGACC 681
Query 604 ATTCCCAAAGG-AACTCTTTTTCCTATGTGTGGTATGAACCTTG-CTTTTGACCGTGAGC 661
|| |||||||| ||| || || ||||||||||| |||||| ||| | |||||||||||||
Sbjct 682 AT-CCCAAAGGGAACACTCTTCCCTATGTGTGGCATGAAC-TTGGCCTTTGACCGTGAGC 739
Query 662 TGATTGGTCCGGCTATGTACTTTGGGCTTATGGGTGATGGACAGCCAATTGGACGCTATG 721
| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||| |
Sbjct 740 TCATTGGTCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACG 799
Query 722 ACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGACCACATGGGATGGGGAGTGA 781
|||| ||||||||||| |||||| |||||||||| |||||||| |||||| ||||||||
Sbjct 800 ACGATATGTGGGCTGGATGGTGTATCAAGGTGATCTGTGACCATTTGGGATTGGGAGTGA 859
Query 782 AGACGGGTTTGCCTTACATATGGCACAGCAAAGCCAGCAACCCATTCGTGAACCTGAAAA 841
|||| |||||||| ||||| | |||||||||||||| ||||| || |||||| |||| |
Sbjct 860 AGACAGGTTTGCCCTACATTTACCACAGCAAAGCCAGTAACCCGTTTGTGAACTTGAAGA 919
Query 842 AGGAATACAACGGAATATTTTGGCAGGAAGAGG-CGATTCCGTTCTTTCA-ATCCGTGAC 899
|||| ||||| ||||| || |||||||| || | ||||| ||||| || | | | |
Sbjct 920 AGGAGTACAAGGGAATCTTCTGGCAGGAGGATATC-ATTCCTTTCTTCCAGAGC-GCAAA 977
Query 900 TCTTC-CTAAAGAGTGCACTT-CGGTGCAGCAATGCTACCTCGAGCTGGCCAAGCTCGTG 957
|| | | ||||| || | | || || ||||||||| | |||||| ||||| | |||
Sbjct 978 GCT-CACGAAAGAA-GCTGTGACAGTTCAACAATGCTACATGGAGCTGTCCAAGTTGGTG 1035
Query 958 AGAG-AGAAACTTGGGAAGGTTGATCCTTACTTCATCACA--CTTGCA-ACTGGAATGGT 1013
| || |||| || | ||||||||||||| | ||| |||||| || | |||||
Sbjct 1036 A-AGGAGAAGCTAAGCCCCATTGATCCTTACTT--TGACAAGCTTGCAGAC-GCTATGGT 1091
Query 1014 CACCTGGATCGAAGCTTGGGAGGAGCTTAAC 1044
||||||||| ||||||||||| |||||||||
Sbjct 1092 CACCTGGATTGAAGCTTGGGATGAGCTTAAC 1122
> Ahg488410 jgi|Araly1|488410|fgenesh2_kg.6__1544__AT5G15650.1
Length=1476
Score = 660 bits (357), Expect = 0.0
Identities = 832/1056 (79%), Gaps = 53/1056 (5%)
Strand=Plus/Plus
Query 16 TCTTCC-GTGAAACCCACGCCAATGTTGAAAGATGAGCTAGACATTGTGATACCTACGAT 74
||| || ||||| || ||||| || ||||||||||||| || || ||||| || || |
Sbjct 73 TCTCCCGGTGAATCCGACGCCCTTGCTGAAAGATGAGCTCGATATCGTGATTCCGACTA- 131
Query 75 TC-GAAACCTCGACTTCCTTGAGATGTGGCGACC-TTTCTTTGAGCAGTATCATTTGATC 132
|| |||||||||| ||||| ||||||||| | || |||| || ||| || ||| |||||
Sbjct 132 TCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCTTTTC-TTCAGCCTTACCATCTGATC 190
Query 133 ATTGTTCAAGATGGTGATCCTTCGAAAG-TCATCAACAT-T-CCAGTAGGGTT-TGACTA 188
|| || || || || ||||| ||| ||| ||| ||| | || | | |||| |||||
Sbjct 191 ATCGTCCAGGACGGAGATCCGTCG-AAGAAGATC--CATGTCCCTG-AAGGTTACGACTA 246
Query 189 CGAGCTCTACAACAGGAACGACATCAATCGAATC-TTGGGTCCCAAGGCCTCTTGCATTT 247
|||||||||||||||||||||||| || || ||| |||| || || || ||||| || |
Sbjct 247 CGAGCTCTACAACAGGAACGACATTAACCGGATCCTTGGA-CCTAAAGCTTCTTGTATCT 305
Query 248 CCTTCAAGGACTCTGCTTGTCGTTGCTTCGGTTACATGGTCTCCAAAAAGAAGTACATCT 307
|||| ||||| ||||||||||| ||||| || |||||||| || || |||||||| ||||
Sbjct 306 CCTTTAAGGATTCTGCTTGTCGGTGCTTTGGGTACATGGTGTCTAAGAAGAAGTATATCT 365
Query 308 ACACCATTGATGATGATTGCTTTGTTGCAAAGGATCCAACAGGGAAAG-AGATCAATGCG 366
|||||||||||| |||||||| ||||| ||||||||| | || |||| || | |||||
Sbjct 366 TCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCATCTGGCAAAGCAGTT-AATGCT 424
Query 367 CTTGAGCAGCATATCAAGAACCTCTTATCT-CC-ATCAACTCCGCATTT-CTTTAACACA 423
|||||||| || ||||||||||| | ||| || ||| |||| | ||| ||| |||||
Sbjct 425 CTTGAGCAACACATCAAGAACCT-TC-TCTGCCCATCGTCTCC-CTTTTTCTTCAACAC- 480
Query 424 CTT-TATGATCCATACAGAGATGGGGCAGACTTT-GTTCGTGGATACCCTTTCAGTATGC 481
||| |||||||| ||| | || || || || ||| || |||||||||||||||||| | |
Sbjct 481 CTTGTATGATCCTTACCGTGAAGGTGCTGA-TTTCGTCCGTGGATACCCTTTCAGTCTCC 539
Query 482 GCGAAGGTGCCATA-ACCGCGGTCTCTCATGGCCTCTGGCTCAACATTCCTGACTATGAT 540
| ||||||| | || || || || ||||| |||||||||||||| |||||||| |||
Sbjct 540 GTGAAGGTGTT-TCCACTGCTGTTTCCCATGGTCTCTGGCTCAACATCCCTGACTACGAT 598
Query 541 GCTCCC-ACTCAGCTTGTGAAACCTCTTGAGAAAAATTCCAGGTATGTTGATGCAGTCAT 599
|| ||| || || || ||||| ||| |||| || |||||||||| ||||| |||||
Sbjct 599 GC-CCCTACCCAACTCGTGAAGCCTAAGGAGAGGAACACCAGGTATGTGGATGCTGTCAT 657
Query 600 GACCATTCCCAAAGG-AACTCTTTTTCCTATGTGTGGTATGAACCTTG-CTTTTGACCGT 657
|||||| |||||||| ||| ||||| || ||||||||||||||| ||| |||| ||||||
Sbjct 658 GACCAT-CCCAAAGGGAACACTTTTCCCAATGTGTGGTATGAAC-TTGGCTTTCGACCGT 715
Query 658 GAGCTGATTGGTCCGGCTATGTACTTTGGGCTTATGGGTGATGGACAGCCAATTGGACGC 717
|| ||||||| || |||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct 716 GATTTGATTGGCCCAGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGC 775
Query 718 TATGACGACATGTGGGCTGGTTGGTGTGTCAAGGTGATATGTGACCACATGGGATGGGGA 777
|| ||||| ||||||||||||||||| |||||||||| ||||||||| || | | ||||
Sbjct 776 TACGACGATATGTGGGCTGGTTGGTGCATCAAGGTGATCTGTGACCACTTGAGCTTGGGA 835
Query 778 GTGAAGACGGGTTTGCCTTACATATGGCACAGCAAAGCCAGCAACCCATTCGTGAACCTG 837
|||||||| |||||||| || || | ||||||||||| |||||||| || |||||| ||
Sbjct 836 GTGAAGACCGGTTTGCCGTATATCTACCACAGCAAAGCGAGCAACCCTTTTGTGAACTTG 895
Query 838 AAAAAGGAATACAACGGAATATTTTGGCAGGAAGAGG-CGATTCCGTTCTTTCA-ATCCG 895
|| ||||||||||| ||||| || |||||||| ||| | ||||||||||| || | | |
Sbjct 896 AAGAAGGAATACAAGGGAATCTTCTGGCAGGAGGAGATC-ATTCCGTTCTTCCAGAAC-G 953
Query 896 TGACTCT-TCCTAAAGAGTGCACTT-CGGTGCAGCAATGCTACCTCGAGCTGGCCAAGCT 953
| || || ||||| ||| | | || |||||||||||| | ||||| | ||| |
Sbjct 954 CAAAGCTATCG-AAAGAA-GCAGTAACTGTTCAGCAATGCTACATTGAGCTCTCAAAGAT 1011
Query 954 CGTGAGAG-AGAAACTTGGGAAGGTT-GATCCTTACTTCATCACA--CTTGCA-ACTGGA 1008
|||| || |||| ||| | || || || ||||| | ||| |||||| || |
Sbjct 1012 GGTGA-AGGAGAAG-TTGAGCTCCTTAGACCCGTACTT--TGACAAGCTTGCAGAC-GCC 1066
Query 1009 ATGGTCACCTGGATCGAAGCTTGGGAGGAGCTTAAC 1044
||||| || ||||| ||||||||||| |||||||||
Sbjct 1067 ATGGTTACATGGATTGAAGCTTGGGATGAGCTTAAC 1102
> Ahg949616 jgi|Araly1|949616|scaffold_801503.1
Length=1120
Score = 438 bits (237), Expect = 4e-122
Identities = 630/813 (77%), Gaps = 53/813 (7%)
Strand=Plus/Plus
Query 58 ATTGTGATACCTACGATTC-GAAACCTCGACTTCCTTG-AGATGTGGCGACCTTTCTTTG 115
|||||||| || || | || ||| ||||||||| || | | | ||| |||| || ||||
Sbjct 78 ATTGTGATCCCAACCA-TCAGAAGCCTCGACTTTCTAGAACA-ATGGAGACCATT-TTTG 134
Query 116 -AGCAGTATCATTTGATCATTGTTCAAGATGGTGATCCTTCGA--AAGTCATCAACA-TT 171
|||| || || ||||||||||| |||||||| || ||||||| ||| || || | ||
Sbjct 135 CAGCATTACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAG--ATTAA-AGTT 191
Query 172 CCAGTAGGGTT-TGACTACGAGCTCTACAACAGGAACGACATCAATC-GAAT-CTTGGGT 228
|| | |||||| ||||||||||||||||||| | || || ||||| | | || ||| |||
Sbjct 192 CCCG-AGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAA-CAGGATCCTT-GGT 248
Query 229 CCCAAG-GCCT-CTTGCATTTCCTTCAAGGACT-CTGCTTGTCGTTGCTTCGG-TTACAT 284
|| || | || ||| || || | ||| || | || ||||||||||||||| || |||
Sbjct 249 -CCTAGAG-CTAATTGTATCTCATACAAAGA-TGGTGGTTGTCGTTGCTTCGGCTT-CAT 304
Query 285 GGTCTCCAAAAAGAAGTACATCTACACCATTGATGATGATTGCTTTGTTGCAAAGGATCC 344
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 305 GGTTTCGAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCC 364
Query 345 AACAGGGAAAGAGATCAATGCGCTTGAGCAGCATATCAAGAACCTCTTAT-CTCCATCAA 403
|| |||||||||||||||| | | | ||||| || |||||||| | | | || ||||
Sbjct 365 AAGTGGGAAAGAGATCAATGTGATAGCTCAGCACATAAAGAACCT-TGAAACACCTTCAA 423
Query 404 CTCCGCATTTCTTTAACACACTTTATGATCCATACAGAGATGGGGCAGACTTT-GTTC-G 461
| || || | ||||||||| || ||||| || | ||||| || | || ||| || | |
Sbjct 424 CACCACACTACTTTAACACTCTCTATGACCCTTTTAGAGAAGGAACTGA-TTTCGT-CAG 481
Query 462 TGGATACCCTTTCAGTATGCGCGAAGGTG-CCATAACCGCGGTCTCTCATGGCCTCTGGC 520
|| || ||||||||| | | ||||||| ||| ||| || | |||||||| || ||||
Sbjct 482 AGGGTATCCTTTCAGTTTAAGGGAAGGTGTCCA-AACTGCCATATCTCATGGGCTTTGGC 540
Query 521 TCAACATTCCTGACTATGATGCTCCCACTCAGCTTGTGAAACCTCTTGA--GAAAAATTC 578
||||||| ||||| || |||||||| || || || ||||| || | || | || | |
Sbjct 541 TCAACATCCCTGATTACGATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACA--C 598
Query 579 CAGGTATGTTGATGCAGTCATGACCATTCCCAAA-GGAACTCTTTTTCCTA-TGTGTGGT 636
||||||||||||||||| ||||| || |||||| ||| | || | || | |||||||
Sbjct 599 GAGGTATGTTGATGCAGTGATGACAAT-CCCAAAAGGAG-TATTGTACCCAATGTGTGGC 656
Query 637 ATGAACCTTGCTTTTGACCGTGAGCT-GATTGGTCCGGCTATGTACTTTGGGCTTATGGG 695
||||| |||||||| | | ||||| | |||| || |||||||||||||| ||||||||
Sbjct 657 ATGAATCTTGCTTTCAATAGAGAGCTTG-TTGGGCCTGCTATGTACTTTGGCCTTATGGG 715
Query 696 TGATGGACAGCCAATTGGACGCTATGACGACATGTGGGCTGGTTGGTGT-GTCAAGGTGA 754
||| || ||||| ||| || || || |||||||||||||||||| | | |||||||
Sbjct 716 TGAAGGCCAGCCCATTTCTCGGTACGATGACATGTGGGCTGGTTGG-GCAGCCAAGGTGG 774
Query 755 TATGTGACCACATGGGATG-GGGAGTGAAGAC-GGGTTTGCCTTA-CATATGGCACAGCA 811
| |||||||| | || | ||| || ||||| ||||| ||| || | | ||||||||||
Sbjct 775 TGTGTGACCAGTTAGGCTTTGGG-GTCAAGACTGGGTT-GCCGTATC-TGTGGCACAGCA 831
Query 812 AAGCCAGCAACCCATTCGTGAACCTGAA-AAAG 843
||||||| ||||| |||||||||||||| ||||
Sbjct 832 AAGCCAGTAACCCGTTCGTGAACCTGAAGAAAG 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5