BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08910.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928542 jgi|Araly1|928542|scaffold_300999.1 1552 0.0
Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1 287 2e-76
Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1 211 1e-53
> Ahg928542 jgi|Araly1|928542|scaffold_300999.1
Length=1016
Score = 1552 bits (840), Expect = 0.0
Identities = 961/1019 (94%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 65 AAGAAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTTCAGGTGGATCGGA 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGGAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTTCAGGTGGATCGGA 60
Query 125 ATGCGAAAGACGACGACTTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAG 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGCGAAAGACGACGACTTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAG 120
Query 185 ACAAGAACCCTAACAACAAAAAAGACGCCGAAGCCAAATTCAAGCAGATCTCCGAAGCTT 244
||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 121 ACAAGAACCCTAATAACAAAAAGGACGCCGAATCCAAATTCAAGCAGATCTCTGAAGCTT 180
Query 245 ACGATGTTTTGAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATGGAGAAGAAGGTC 304
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 181 ACGATGTTTTGAGTGATCCTCAAAAGCGAGCAATCTATGATCAATACGGAGAAGAAGGTC 240
Query 305 TAACAAGCCAGGCTCCGCCTCCCGGAGCAGGC-GG----CGGGT-TTTCGGATGGAGGGG 358
|||||||||||| ||||||||| || || ||| || ||||| ||| ||||||||||
Sbjct 241 TAACAAGCCAGGTTCCGCCTCCTGGTGCCGGCGGGTTTTCGGGTGGTTCAGATGGAGGGG 300
Query 359 CTTCGTTCCGGTTCAACGGTAGAAGCGCAGATGATATCTTCTCGGAGTTCTTTGGCTTCA 418
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 301 CTTCGTTCCGGTTCAACGGCAGAAGCGCAGATGACATCTTCTCCGAGTTCTTTGGCTTCA 360
Query 419 CAAGACCATTTGGTGACTCACGTGGTGCAGGTCCCTCTAATGGGTTCCGGTTCGCGGAAG 478
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 CAAGACCCTTCGGTGACTCACGTGGTGCAGGTCCCTCTAATGGCTTCCGGTTCGCGGAAG 420
Query 479 ACGTTTTCTCGTCAAATGTTGTTCCACCGAGGAAAGCTGCCCCTATTGAGAGACAACTTC 538
||||||| || || || |||| || ||||||||||||||||||||||||||||||||
Sbjct 421 ACGTTTTTTCCTCGAA---TGTTACAATGAGGAAAGCTGCCCCTATTGAGAGACAACTTC 477
Query 539 CTTGTAGTTTGGAAGATCTCTACAAAGGAGTCAGTAAGAAGATGAAGATCTCTCGGGACG 598
||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 478 CTTGTAGTTTGGAGGATCTCTACAAAGGAATCACTAAGAAGATGAAGATCTCTCGGGACG 537
Query 599 TCCTCGATTCAAGCGGGAGACCCACAACAGTTGAGGAGATCTTGACGATAGAAATCAAGC 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 TCCTCGATTCAAGCGGGAGACCCACAACAGTTGAGGAGATCTTGACAATAGAAATCAAGC 597
Query 659 CAGGGTGGAAGAAAGGGACGAAGATTACCTTCCCGGAGAAAGGAAACGAGCAGCGAGGAA 718
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 598 CAGGGTGGAAGAAAGGGACGAAGATAACCTTCCCAGAGAAAGGAAACGAGCAGCGAGGAA 657
Query 719 TCATACCATCAGATCTTGTATTCATAGTTGATGAGAAGCCACATGCGGTGTTCAAGCGAG 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 658 TCATACCATCAGATCTTGTATTCATAGTTGATGAGAAGCCACATGCTGTGTTCAAGCGAG 717
Query 779 ACGGGAATGACCTTGTGATGACACAGAAGATCCCTCTTGTGGAAGCCCTCACGGGATACA 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 718 ACGGGAATGACCTTGTGATGACACAGAAGATCCCTCTCGTGGAAGCCCTCACGGGATACA 777
Query 839 CTGCTCAGGTCTCGACTCTGGATGGAAGATCAGTAACGGTTCCAATTAACAACGTGATCA 898
| ||||||||| | |||||||| ||||||||||||||||||||| | |||| |||||| |
Sbjct 778 CCGCTCAGGTCACAACTCTGGACGGAAGATCAGTAACGGTTCCAGTCAACATCGTGATTA 837
Query 899 GCCCTTCTTATGAAGAGGTGGTGAAAGGTGAAGGCATGCCAATCCCTAAAGACCCATCAA 958
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 838 GCCCTTCTTATGAAGAGGTGGTGAAAGGCGAAGGCATGCCAATCCCTAAAGACCCATCAA 897
Query 959 AGAAAGGGAACTTGAGAATCAAGTTCACTGTTAAGTTCCCATCGAGGCTAACAACAGAGC 1018
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 898 AAAAAGGGAACTTGAGAATCAAGTTCAATGTTAAGTTCCCATCAAGGCTAACAACAGAGC 957
Query 1019 AGAAATCTGGAATCAAACGAATGTTTTCGTCTTCCTAGTCTGTCTCTTTCTATCTTACT 1077
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 958 AGAAATCTGGAATCAAACGAATGTTTTCGTCTTCGTAGTCTGTCTCTTTCTCTCTTACT 1016
> Ahg486937 jgi|Araly1|486937|fgenesh2_kg.6__71__AT5G01390.1
Length=1255
Score = 287 bits (155), Expect = 2e-76
Identities = 289/351 (82%), Gaps = 20/351 (6%)
Strand=Plus/Plus
Query 85 ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-TGCGAAAGACGACGA-C 141
|||||||| |||| | || ||||||||| | || |||| ||| ||| || |||||||| |
Sbjct 90 ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC 147
Query 142 TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAACAAC 201
|| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 148 TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC 206
Query 202 AAAAAAGACGCCGAAGCCAAATTCAAGCAGATCTCCGAAGCTTACGATGTTTTGAGTGAT 261
|||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 207 AAAAAACAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 266
Query 262 CCTCA-AAAGAGAGCCATCTATGATCAATATGGAGAAGAAGGTCTAA-C-AAGCCAGGCT 318
||||| ||| |||| ||||| || ||||| |||||||||||| ||| | |||| |||
Sbjct 267 CCTCAGAAAC-GAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGC--GGCC 323
Query 319 CCGCCTCCCGGAGCAGGCGGCGGGTTTTC-GGATG-GA-G--GG-GCTTCGTTCCGGTTC 372
|| ||||| || || || || | |||| || | || ||||| |||||||||
Sbjct 324 CCACCTCCTGGCGCCGGTGGTTACCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTTC 383
Query 373 AA-CGGTAGAAGCGCAGATGATATCTTCTCGGAGTTCTTTGGCTTCACAAG 422
|| | |||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 384 AATCCC-AGAAGCGCTGATGACATCTTCTCCGAGTTCTTTGGTTTCACAAG 433
> Ahg491921 jgi|Araly1|491921|fgenesh2_kg.7__1354__AT4G28480.1
Length=1466
Score = 211 bits (114), Expect = 1e-53
Identities = 207/250 (83%), Gaps = 14/250 (6%)
Strand=Plus/Plus
Query 59 AAGA-AGAAGAAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTT-CAGGT 116
|||| |||||| | || |||| || ||||| || ||||||||||||| | || |||||
Sbjct 228 AAGAGAGAAGACGAAGAAGGT-GAG--ATGGGAGTGGATTATTACAAGG-TGTTACAGGT 283
Query 117 GGATCGGAATGCG--AAAGACGACGA-CTTGAAGAAAGCTTATCGCAAACTCGCCATGAA 173
||| ||| ||| || ||||| || ||| |||||||||||| | |||||||| |||||
Sbjct 284 TGAT-AGAA-GCGCTAACGACGATGACCTT-AAGAAAGCTTATAGAAAACTCGCTATGAA 340
Query 174 GTGGCATCCAGACAAGAACCCTAACAACAAAAAAGACGCCGAAGCCAAATTCAAGCAGAT 233
|||||||| ||||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 341 ATGGCATCCCGACAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGCAGAT 400
Query 234 CTCCGAAGCTTACGATGTT-TTGAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATG 292
||| ||||| ||||||||| || || ||||||||||||||||| | ||||||||||| |
Sbjct 401 CTCTGAAGCCTACGATGTTCTT-AGCGATCCTCAAAAGAGAGCGGTATATGATCAATACG 459
Query 293 GAGAAGAAGG 302
| || |||||
Sbjct 460 GTGAGGAAGG 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5