BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08920.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478195 jgi|Araly1|478195|fgenesh2_kg.3__896__AT3G08920.1 1227 0.0
> Ahg478195 jgi|Araly1|478195|fgenesh2_kg.3__896__AT3G08920.1
Length=821
Score = 1227 bits (664), Expect = 0.0
Identities = 781/835 (94%), Gaps = 17/835 (2%)
Strand=Plus/Plus
Query 1 ATTGGTTAAATTCCTCTGAAAATCCAAAAGAATTAAAGATGACAGTTCTTCTTCCTCAGC 60
|||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1 ATTGGTTAAATTCCTCAGAAAATCCAAAAGAATTAGAGATGACACTTCTTCTTCCTCAAC 60
Query 61 TAAACCATATCCACAAGCTACCAGTAGTACTAAACCGACGCCTCCGACAATCATACAGAT 120
||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||
Sbjct 61 CAAACCATATCCACAAGCCACCAGTAGTACTATACCGACGCCTCCGAAAACCATACAGAT 120
Query 121 TACCAGTGATCTCCGCCGTTTCCGGTAAAGAGCTGATACTTTCCGGCAAGGTACGGGCGG 180
||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 121 TACCAGTGATCTCCGCCGTGTCCGGTAAGGAACTGATACTTTCCGGCAAGGTCCGGGCGG 180
Query 181 TGGAGCCCAAAGAAGCCAATG-CGGTTGTGGCGTCGGAGGGATATATACTGTTAGACGTG 239
||||||| ||||||||||| | |||||||||||||||||||||| | || |||||||||
Sbjct 181 TGGAGCCGAAAGAAGCCAA-GACGGTTGTGGCGTCGGAGGGATACGTGCTCTTAGACGTG 239
Query 240 AGGCCGGCTTGGGAAAGAGAAAAGGCACGCGTGAAAGGTTCCTTACACGTGCCACTGTTC 299
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 240 AGGCCGGCTTGGGAAAGAGAAAAGGCACGTGTGAAAGGGTCCTTACACGTGCCACTGTTC 299
Query 300 GTGGAAGATCCAGACAATGGGCCGATCACGTTGCTGAAGAAATGGATTCATTTGGGATAT 359
||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GTGGAGGATACAGACAATGGGCCGATTACGTTGCTGAAGAAATGGATTCATTTGGGATAC 359
Query 360 ATTGGGCTTTGGACGGGCCAGAGATTCACCATGATCAATGACGAATTCGCCCTCCGTGTT 419
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 360 ATTGGGCTTTGGACGGGCCAGAGATTCACCATGTTCAATGACGAATTCACCCTCCGTGTT 419
Query 420 GTGGAGGCTGTCCCGGACAAAGAGAGTAAAGTGCTCGTCGTGTGCGGTGAAGGACTCAGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGGAGGCTGTCCCGGACAAAGAGAGTAAAGTGCTCGTCGTGTGCGGTGAAGGACTCAGG 479
Query 480 TCGTTGGCGGCTGTATCAAAGCTCCACGGAGAAGGGTACAAAAGCTTAGGGTGGTTAACC 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 480 TCGTTGGCGGCTGTATCAAAACTCCACGGAGAAGGGTACAAAAGCTTAGGGTGGTTAGCC 539
Query 540 GGAGGGTTTAACCGAGTATCCGAGGGAGATTTTCCAGAGATCGAAGGGACCGAAGAGCTT 599
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GGAGGGTTTAACCGAGTAACCGAGGAAGATTTTCCAGAGATCGAAGGGACCGAAGAGCTT 599
Query 600 CGGTTCGCCACGATAGGAGGTGTATCATTTTATTTACTCAAACTACTTGTACTGTTACCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTTCGCCACGATAGGAGGTGTATCATTTTATTTACTCAAACTACTTGTACTGTTACCG 659
Query 660 TCTTTTGGCCAGAAGAGTCGTTAAATTGGTTTTTTGGAGCCAAGTGTGAAGA--CAtttt 717
||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||
Sbjct 660 TCTTTTGGCCAGAAGAGTCGTTAAATTGGTTTTTTA-AGCCAAGTGTGGAGATTCTTTTT 718
Query 718 ttgtttttAAAATTGTGTCCGGTTTACACAATTGGTCACTGGTTTATTACTTACAGATGT 777
||||| ||||||||||||||||||| | | ||| | || |||| ||||||||||
Sbjct 719 TTGTTCTTAAAATTGTGTCCGGTTT-C----T-GGTT--TA-TT-ATTA-TTACAGATGT 767
Query 778 CTTTCATTAGTTGAAATATTTTGTCCGAATCATTTGCTTCGGACAGCTAATCTCC 832
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 768 CTTTCATTAGTTGAAATATTT-GTCCGAATCATATGCTTCGGACAGCTAATCTCC 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5