BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08930.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478196 jgi|Araly1|478196|fgenesh2_kg.3__897__AT3G08930.1 3053 0.0
Ahg939518 jgi|Araly1|939518|scaffold_600062.1 1954 0.0
> Ahg478196 jgi|Araly1|478196|fgenesh2_kg.3__897__AT3G08930.1
Length=1845
Score = 3053 bits (1653), Expect = 0.0
Identities = 1754/1804 (97%), Gaps = 2/1804 (0%)
Strand=Plus/Plus
Query 128 AAATCTCTCGAATTGGGGACGTTGTACATTGCACACGATGGGCGATTTCAACCTCGCTCT 187
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 43 AAATCTCTCGAATTGGGGACCTTGTACATTGCGCACGATGGGCGATTTCAACCTCGCTCT 102
Query 188 CGTGATTGTCGCGATCGTTGTTTGCGTCATCGTATTCATCTCTAGCATCTATCTTCTCGT 247
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 103 CGTGATTGTCGCGATCGTTGTTTGCGTCATCGTTTTCATCTCTAGCATCTATCTCCTCGT 162
Query 248 CAACTATCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTT 307
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CAACTACCAGCATCCAGATGATGCAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTT 222
Query 308 TGGCCTTTCTATTGCTATGATCTCGATTCTCATGTTACCGGCTGATGTGGCCAATCGGCA 367
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 223 TGGGCTGTCTATTGCTATGATCTCGATTCTCATGTTACCGGCGGATGTGGCCAATCGGCA 282
Query 368 TGCTTGTCGACATGCTATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TGCTTGTCGACATGCTATATACAATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCT 342
Query 428 TTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAAT 487
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 343 TTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCATTCGCAAT 402
Query 488 GTTTTTCTATGAAGGCGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAAT 547
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GTTTTTCTATGAGGGCGACCAGGACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAAT 462
Query 548 TTGGGTAGTTACCACGGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCAT 607
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTGGGTGGTAACCACGGCTGTTGTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCAT 522
Query 608 TGGAAAGGTGGACTTCTCGGTCAGGCATTTGGCTTCTGCCACATCCACTTTCCCTACTTC 667
|||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 523 TGGAAAGGTGGACTTCTCTGTCAGGCACTTGGCTTCTGCCACTTCCACTTTCCCTACTTC 582
Query 668 CTGGCAGTTTTCAAATACTCAACCATGCATAGGTAACACTGCTCGCCAGTGCTCAGCATT 727
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 583 CTGGCAATTTTCAAATACTCAACCATGCATCGGTAACACCGCTCGCCAGTGCTCAGCATT 642
Query 728 TACAGCTAATCCCACATCTGAGAAAACATGGACTATGCGTACTACTTTTCCAGAATATGT 787
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 643 TACAGCCAATCCCACATCTGAGAAAACATGGACCATGCGTACTACTTTTCCAGAGTATGT 702
Query 788 TGTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTAT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGTTGCTCTTGCGACAATTGTTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTAT 762
Query 848 TGCATGTCTACCAT-TAGGACTTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCA 906
|||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 763 TGCATGTCTACC-TCTGGGACTTATCACTGCATTCATCAGGCGGCCAAAGGCTGTTATCA 821
Query 907 CTCGATCACAATATATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGA 966
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTAGATCACAATATATAAAGGAGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGA 881
Query 967 AAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGA 1026
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 882 AAGCAGCTGATGGACTTCATCAGGAAGAGAGAAGTGGTGCTAAGGGCAGGAAGTGGAGGA 941
Query 1027 AAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAG 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AAAATGTGAAAGCAGTTGAAAAGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAG 1001
Query 1087 AAGAGATGTATCCTCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTCGGAT 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1002 AAGAGATGTATCCTCAAGGAGAGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTTGGAT 1061
Query 1147 ACTTGGCCAAGTTTATTCTTGGAATCGTAGGATTGATCGTTTCCATTGCTTGGGTTGCAC 1206
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1062 ACTTGGCCAAGTTCATTCTTGGAATCTTAGGATTGATCGTTTCCATTGCTTGGGTTGCAC 1121
Query 1207 ACATCATCATATATCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ACATCATCATATATCTACTCGTCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCA 1181
Query 1267 TTAAGCTTGATGATGTTTGGGGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TTAAGCTTGATGATGTTTGGGGTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCT 1241
Query 1327 ACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ACCTTCTACTTGCTGTTATCGCTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTA 1301
Query 1387 CCATTCATCCAATGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCC 1446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1302 CCATTCATCCAATGAAATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGGC 1361
Query 1447 TCATTCTTCTTTGTTCAATCAGCGTGATTCAATTTTGTGCCACTGCATTTGGATATTACG 1506
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1362 TCATTCTTCTTTGTTCAATCAGTGTGATTCAATTTTGTGCCACTGCATTTGGATATTATG 1421
Query 1507 CTCAAGCCACTGCTGCCCAGGAGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTA 1566
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1422 CTCAAGCCACTGCTGCCCAGGAGATATTTGGTCACACATTGCAGTCGCTTAGAGGAATTA 1481
Query 1567 AGTACCTTTACAAGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGACTT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AGTACCTTTACAAGTACAATGTGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGACTT 1541
Query 1627 TCCTATATTACATTGCCTTTGGATGGAGAAGaaaaaaaaCTAGTGGCCGTTTCCAGCTCT 1686
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1542 TCCTATATTACATTGCCTTTGGATGGAGAAGAAAAAAACCTAGTGGCCGTTTCCAGCTCT 1601
Query 1687 CTTCTTAATGTAAAACGTTTTCACGGGGATCTGATTGAGTGCTGTCGACAAAGTTTCTAC 1746
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1602 CTTCTTAATGTAAAACGTTTTCACGGGGATCTGATTGAGTGCTGTCGACAGAGTTTCTAC 1661
Query 1747 TTGTTTCTGGATCATCATCGATTCCAGAAGTATCTAGAGACTCTGCTTCTGAGGTTTATT 1806
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1662 TTGTTTTTGGATCATCATCGATTCCAGAAGTATCTAGTGACTCTGCTTCTGAGGTTTGTT 1721
Query 1807 TTCCTGAATGTATTATTAAATTTCTTGTGAGTGTGCTGTTTGGTTGCGCAACAGTTAGCT 1866
||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||
Sbjct 1722 TTCCTGAATGTATTATTAAATTTTTTGTGAGTGTACTGTTTGGTTGTGCAACACTTAGCT 1781
Query 1867 GTCCTGTCTTGGTCTATTGTACTGTCTCGGATGCGATCATGTAATCATATTTTCTTAATG 1926
|||| || ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1782 GTCCGGTGTTGGTCTATTGTACTGTTTCGGATGCGATCATGTAATCATATTTTTTTAATG 1841
Query 1927 AGAA 1930
||||
Sbjct 1842 AGAA 1845
> Ahg939518 jgi|Araly1|939518|scaffold_600062.1
Length=1674
Score = 1954 bits (1058), Expect = 0.0
Identities = 1390/1554 (89%), Gaps = 8/1554 (1%)
Strand=Plus/Plus
Query 151 GTACATTGCACACGATGGGCGATTTCAACCTCGCTCTCGTGATTGTCGCGATCGTTGTTT 210
||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||
Sbjct 7 GTACATTGCACGCGATGGGGGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAGTTT 66
Query 211 GCGTCATCGTATTCATCTCTAGCATCTATCTTCTCGTCAACTATCAGCATCCAGATGATG 270
|||| || || |||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 67 GCGTAATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATGATG 126
Query 271 CAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTTTGGCCTT-TCTATTGCTATGATC 329
| |||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 127 CGAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGG-TTTATCGATTGCTATGATC 185
Query 330 TCGATTCTCATGTTACCGGCTGATGTGGCCAATCGGCATGCTTGTCGACATGCTATATAC 389
|| ||||||||||||||||| |||||||| || |||||||||||||||||| | || ||
Sbjct 186 TCCATTCTCATGTTACCGGCGGATGTGGCAAACCGGCATGCTTGTCGACATTCGATTTAT 245
Query 390 AATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCTTTGGCTTGCTATTTATATCGTG 449
||||| ||||| ||||||||||| || |||||||| ||||||||||| |||| || ||
Sbjct 246 AATGGCGCTTGTAATCTCACCTTACCTATGAAGGAGCTTTGGCTTGCCGTTTACATTGTC 305
Query 450 GACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAG 509
|||||| | || || ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 306 GACGCTGTGCTTGTATTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAG 365
Query 510 GACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAATTTGGGTAGTTACCACGGCTGTT 569
|||||| ||||||| ||||||||||||||||| || |||||||| ||||| || ||||||
Sbjct 366 GACAAGGCTCTTGGGAAGAGGATAAAAAGTGCTTTGATTTGGGTGGTTACTACAGCTGTT 425
Query 570 GTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCATTGGAAAGGTGGACTTCTCGGTC 629
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 426 GTTTGTGCTCTGGTGCTTGGAATTTTATACGGAGTCATTGGAAAGGTGGACTTCTCTGTA 485
Query 630 AGGCATTTGGCTTCTGCCAC-ATCCACTTTCCCTACTTCCTGGCAGTTTTCAAATACTCA 688
||||| || |||||||||| | | |||||||||||||| |||||||||||||||| |||
Sbjct 486 AGGCACTTATCTTCTGCCACGA-CGACTTTCCCTACTTCATGGCAGTTTTCAAATAATCA 544
Query 689 ACCATGCATAGGTAACACTGCTCGCCAGTGCTCAGCATTTACAGCTAATCCCACATCTGA 748
||| ||||| |||||||||||||| ||||||||||||| |||||||||| | | |||||
Sbjct 545 ACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTGA 604
Query 749 GAAA-ACATGGACTATGCGTACTACTTTTCCAGAATATGTTGTTGCTCTTGCGACAATTG 807
||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 605 -AAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 663
Query 808 TTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTATTGCATGTCTACCATTAGGAC 867
|||||||||| || ||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 664 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 723
Query 868 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGATCACAATATATAAAGG 927
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 724 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 783
Query 928 AGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATC 987
| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 784 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 843
Query 988 AGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAA 1047
|||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 844 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 903
Query 1048 AGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAGAAGAGATGTATCCTCAAGGAG 1107
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 904 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 963
Query 1108 AGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTATTCTTG 1167
|||||||||| ||||| ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 964 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTATTCTTG 1023
Query 1168 GAATCGTAGGATTGATCGTTTCCATTGCTTGGGTTGCACACATCATCATATATCTACTCG 1227
||||| ||||||| || ||||| | |||||| |||| |||||||||||||||||||| |
Sbjct 1024 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1083
Query 1228 TCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCATTAAGCTTGATGATGTTTGGG 1287
| |||||||| ||||| ||||||||||| || |||||||| || || ||||| || ||||
Sbjct 1084 TTGACCCTCCCCTCTCTCCTTTTCTTAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1143
Query 1288 GTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCG 1347
||||| | ||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1144 GTCTTCTGGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1203
Query 1348 CTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGG 1407
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1204 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCTATGAAATGGG 1263
Query 1408 GAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCA 1467
|||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||
Sbjct 1264 GAGCCACTCTTATGAACTCTTTTCTCTTCAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1323
Query 1468 GCGTGATTCAATTTTGTGCCACTGCATTTGGATATTACGCTCAAGCCACTGCTGCCCAGG 1527
| ||||||||||| || |||||||||||||||||||| ||||||||||| || || ||||
Sbjct 1324 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1383
Query 1528 AGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTAAGTACCTTTACAAGTACAATG 1587
|||||||||||||||| |||||||||||| | || ||||||||||| |||||||||||||
Sbjct 1384 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1443
Query 1588 TGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGAC-TTTCCTATATTACATTGCCTTT 1646
||||||| |||||||||||| |||| ||||||||||| ||| |||||||||| ||||||
Sbjct 1444 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGACTGACCTTTT-TATATTACATAGCCTTT 1502
Query 1647 GGATGGAGAAGaaaaaaaaCTAGTGGCCGTTTCCAGCTCTCTTCTTAATGTAAA 1700
||||||||||||||||| | || || | |||||||||||| | |||||||||
Sbjct 1503 GGATGGAGAAGAAAAAAGCCGAGCGGTAGATTCCAGCTCTCTACCTAATGTAAA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5