BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08950.1
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478203 jgi|Araly1|478203|fgenesh2_kg.3__904__AT3G08950.1 1840 0.0
> Ahg478203 jgi|Araly1|478203|fgenesh2_kg.3__904__AT3G08950.1
Length=1192
Score = 1840 bits (996), Expect = 0.0
Identities = 1095/1143 (96%), Gaps = 5/1143 (0%)
Strand=Plus/Plus
Query 28 GAAATCAGCGAATTTGTGAACTTCAGAGAAAAATTGGTCGTCAATGGCGTCTGCTCTATG 87
|||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1 GAAAGCAGCGAATTTGTGAACTTGAGAGAAAAAGCGGTCGTCAATGGCGTCTGCTCTATG 60
Query 88 TAGAACTGCAAGCCGTCTTCGTTCCGTTCAACTTTTTCGTCGGATTCGCGTCTCCAGCGA 147
||||||||||||||||||||||||| | ||| ||| |||||||||||||||||| |||||
Sbjct 61 TAGAACTGCAAGCCGTCTTCGTTCCATCCAAATTTGTCGTCGGATTCGCGTCTCGAGCGA 120
Query 148 TCTACTATCGGCATCGTCTCCTTCTCCGGCGTGCATCTCCGACGCGCTTCGTCATGGAGA 207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTACTATCGGCATCGTCTCCTTTTCCGGCGTGCATCTCCGACGCGCTTCGTCATGGAGA 180
Query 208 TTTCTCTCTTCCTCGATCGtttttttCACTTAACTGTGGAATCGAAATGCTGAAAATGGA 267
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 181 TTTCTCTCTTCCTCGATCGTTTTTTTCACTTAACTGTGGAATTGAAATGATGAAGATGGA 240
Query 268 TCAGAGATGTTTGCTGAGTACTTCTGCTTCTGATACTACCTCGAAACATGACTCAGGTAA 327
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 241 TCAGAGATGTTTGCTGAGTACTTCTGCTTCTGATACTACCTCGAAACCTGACTCCGGTAA 300
Query 328 ACCGGAAACAAAATCTTCGGAGAAAAATGAGAAATCTGGAGGATC-GGAGAGTTCTGATG 386
| |||||||||||||||| || ||||||||||| ||||||||||| || |||||||||||
Sbjct 301 ATCGGAAACAAAATCTTCCGATAAAAATGAGAATTCTGGAGGATCAGG-GAGTTCTGATG 359
Query 387 GTGGTTCAGATCATAAAAACGAGCGTGCTTCTGGAAAAGACGTTCGTGGAGGGCCGGTTT 446
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGGTTCAGATCAGAAAAACGAGCGTGCTTCTGGAAAAGACGTTCGTGGAGGGCCGGTTT 419
Query 447 CATGGATGAGCTTTTTCTTGCTGTTTGCTACTGGAGCTGGATTGGTCTACTATTATGACA 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CATGGATGAGCTTTTTCTTGCTGTTTGCTACTGGAGCTGGATTGGTCTACTATTATGATA 479
Query 507 CACAAAAGAAACGTCATATCGAAGATATAAATAAGAACTCTATAGCCGTCAAGGAGGGGC 566
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 480 GAGAAAAGAAACGTCATATCGAAGATATAAATAAGAATTCTATAGCCGTCAAGGAGGGAC 539
Query 567 CATCTGCTGGAAAAGCAGCCATTGGAGGACCATTCAGCCTTATAAGAGACGATGGGAAAC 626
||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 540 CATCTGCAGGAAAAGCAGCCATTGGAGGACCATTCAACCTTATAAGAGACGATGGAAAAC 599
Query 627 GTGTGACGGAGAAAAACTTGATGGGAAAATGGACCATTTTATACTTTGGTTTCACTCATT 686
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 GTGTGACGGAGAAAGACTTGATGGGAAAATGGACCATCTTATACTTTGGTTTCACTCATT 659
Query 687 GTCCCGATATCTGTCCTGACGAACTTATTAAGTTAGCTGCTGCCATTGACAAAATAAAGG 746
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCCCGATATCTGTCCTGACGAGCTTATTAAGTTAGCTGCTGCCATTGACAAAATAAAGG 719
Query 747 AAAATTCGGGAGTAGACGTGGTGCCAGTGTTTATCTCTGTGGACCCTGAAAGAGACACAG 806
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 AAAATTCGGGAGTAGACGTGGTGCCAGTGTTTATCTCTGTGGATCCTGAAAGAGACACAG 779
Query 807 TTCAGCAAGTACATGAATATGTCAAAGAATTTCACCCGAAATTGATCGGGTTAACTGGGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCAGCAAGTACATGAATATGTCAAAGAATTTCACCCGAAATTGATCGGGTTAACTGGGA 839
Query 867 GCCCTGAAGAAATCAAATCGGTGGCCCGATCTTACCGGGTTTACTACATGAAGACCGAAG 926
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 GCCCTGAAGAAATTAAATCGGTGGCCCGATCTTACCGGGTTTACTACATGAAGACTGAAG 899
Query 927 AGGAAGATTCAGACTATCTCGTTGATCACTCTATAGTCATGTACTTGATGAGTCCGGAGA 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGAAGATTCAGACTATCTCGTTGATCACTCTATAGTCATGTACTTGATGAGTCCGGAGA 959
Query 987 TGAATTTTGTGAAATTCTACGGGAAGAATCACGATGTTGACTCGTTGACAGACGGCGTTG 1046
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TGAATTTTGTGAAATTCTACGGGAAGAATCACGATGTTGACTCGTTGACCGACGGCGTTG 1019
Query 1047 TAAAAGAGATCCGTCAGTACCGGAAGTAAAGAACCTTC---GAAGTACACTTAGGTGATT 1103
||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1020 TAAAAGAGATCCGACAGTACCGGAAGTAAAGAGCCTTCTTCGAAGTACACTTAGGTGATT 1079
Query 1104 AATATACATTATTCCCATTTTTGGAAGCTCATCATTAATAAGGATTTCTCAGAACACGGA 1163
||| ||||||||||||||||||||||| ||| |||||||||| ||||||||| || ||||
Sbjct 1080 AATTTACATTATTCCCATTTTTGGAAGGTCACCATTAATAAGAATTTCTCAGTACGCGGA 1139
Query 1164 GCT 1166
|||
Sbjct 1140 GCT 1142
Score = 54.7 bits (29), Expect = 2e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 1182 AAAAAACATCAGTTTTTGTTGTGGCCGAG-CAT 1213
||||||||||||||||||||||||||||| |||
Sbjct 1143 AAAAAACATCAGTTTTTGTTGTGGCCGAGGCAT 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5