BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08970.1
Length=2036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478205 jgi|Araly1|478205|fgenesh2_kg.3__906__AT3G08970.1 2891 0.0
> Ahg478205 jgi|Araly1|478205|fgenesh2_kg.3__906__AT3G08970.1
Length=1957
Score = 2891 bits (1565), Expect = 0.0
Identities = 1822/1943 (94%), Gaps = 29/1943 (1%)
Strand=Plus/Plus
Query 18 AAAAGAGAAAAAGATTGAGAGGTTGTACTTTCGGGATGGTGAGAACAAGATTGGCGATAT 77
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAAAAAGAAGAAGATTAAGAGGTTGTACTTTCGGGATGGTGAGAACAAGATTGGCGATTT 60
Query 78 CTGTTGTTCTTGTGTCGACATTGTTGTTGTTGAATGTGAAAG-CGAAGAGCGTTGATCCT 136
|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 61 CTGTTGTTCTTGTGTCCACATTGTTGTTGTTGAATGTG-GAGTCGAAGAGCGTTGATCCT 119
Query 137 TACAAGGTTCTTGGAGTATCTAAGGATGCAAAGCAGCGTGAAATCCAGAAAGCTTTCCAC 196
|| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 120 TATAAGGTTCTTGGAGTATCTCGGGATGCAAAGCAGCGTGAAATTCAGAAAGCTTTTCAC 179
Query 197 AAGCAATCTCTGAAATATCATCCAGATAAAAACAAAGATAAGGGTGCTCAGGAGAAGTTT 256
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AAGCTCTCTCTGAAATATCATCCAGATAAAAACAAAAATAAGGGTGCTCAGGAGAAGTTT 239
Query 257 GCTGAGATTAATAATGCGTATGAGATCTTATCTGATGAAGAGAAGAGGAAAAACTATGAT 316
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTGAGATTAATAATGCTTATGAGATCTTATCTGATGAAGAGAAGAGGAAAAACTATGAT 299
Query 317 CTTTATGGAGATGAGAAAGGACAGCCTGGATTTGATTCGGGGTTTCCCGGAGGTAATGGT 376
||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 300 CTTTATGGAGACGAGAAAGGACAGCCAGGATTTGACTCGGGTTTTCCCGGAGGTAATGGT 359
Query 377 GGGTATTCTTACTCCTC---------A-A--GTGGTGGTGGTTTCAACTTTGGAGGGCCT 424
|||||||| |||||||| | | |||||||||||||||| |||||||||||
Sbjct 360 GGGTATTCATACTCCTCAAATGGTGGACATGGTGGTGGTGGTTTCAATTTTGGAGGGCCA 419
Query 425 GGTGGTTGGCAAAATATGGGCGGTGGGGGAGGTTCCAAATCGTTTTCTTTCTCGTTTGGC 484
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GGTGGATGGCAAAATATGGGGGGTGGGGGAGGCTCCAAATCGTTTTCTTTCTCGTTTGGC 479
Query 485 GGTCCTAGTGAAAGCTCCTTTGGTTTTGGTATGGATGATATCTTTTCCATGTTTTCGGGC 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GGTCCTAGTGAAAGCTCCTTTGGTTTTGGGATGGATGATATCTTTTCCATGTTTTCGGGC 539
Query 545 GGTAGTTCTAAAGGAAAGGAGCAGTTTGGTGGCTTTGGTAGCTCATCGAATGCTGAATCT 604
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GGTAGTTCTAAAGGAAAGGAGCAGTTTGGTGGCTTTGGTAGCTCATCGAAGGCTGAATCT 599
Query 605 AAATCAAAGAGCAGTACTGTAGCAGCTATCAAAACCATTAACTCTCAGGTCTATAAGAAG 664
||||||||||||||||| |||||| |||||| |||||| || ||||||||||||||||||
Sbjct 600 AAATCAAAGAGCAGTACGGTAGCAACTATCAGAACCATAAATTCTCAGGTCTATAAGAAG 659
Query 665 GACGTTGTGGACCAAGGGATGACTTGGCTTTTGTTGTCGTATCTTCCATCTCAGAGGGGA 724
|| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 660 GAAATTATGGACCAAGGGATGACTTGGCTTGTGTTGTCGTATCTTCCATCTCAAAGGGGA 719
Query 725 AGC-CAGTACCATGAATCCATCATAGAGGAAGTTGCTGAGTCGTTGCAAGGAGCTTTAAA 783
| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 A-CTCAGTACCATGAATCGATCATAGAGGAAGTTGCTGAGTCGTTGCAAGGAGCTTTAAA 778
Query 784 GGTTGGGCGAT-TAAATTGTGAAACAGAATCCTCTCTTTGCAAACAACTAGGCATAGTTC 842
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTTGGGCG-TATAAATTGTGAAACAGAATCCTCTCTTTGCAAACAACTAGGCATAGTTC 837
Query 843 CTCGTAGGGCTCCAAGGATGTTTGTTTATTCATACACATCAAGTGGCAAAGCTACCTTAG 902
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCGTAGGGCTCCAAGGTTGTTTGTTTATTCATACACATCAAGTGGCAAAGCTACCTTAG 897
Query 903 CAGAATATACTGAAGAGCTTGTTGCAAAGAAGGTGAAAAGCTTCTGCCAGGAACATCTAC 962
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 CAGAATATACTGAAGAGCTTGTTGCAAAGAAGGTGAAAAGTTTCTGCCAGGAACATCTAC 957
Query 963 CGAGATTCTCAAAAAAG-ATTGATCTGAATACATTCGATGTATCTGCCGTTAGCTCACAA 1021
|||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 958 CGAGATTCTC-AAAAAGAATTGATCTGAATACATTCGATGTTTCTGCTGTTAGCTCACAA 1016
Query 1022 AAGACTCCTAAAGTTTTGCTTCTGTCAACAAAGAAAGACACTCCTGTCATCTGGCGGGTT 1081
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1017 AGGACTCCTAAAGTTATGCTTCTGTCAACAAAGAAAGACACTCCTGTTATCTGGCGTGTT 1076
Query 1082 CTAAGTGGCTTGTACAATGGACGATTTGTCTTTTACAACACAGAGGTCCATGATACTTCT 1141
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1077 CTGAGTGGCTTGTACAATGGACGCTTTGTCTTTTACAATACAGAGGTCCATGATACTTCT 1136
Query 1142 GATCCAAAGATACAAAAGTTGGGGGTAGACAAGTTTCCGGCAATAGTTGGTTGGTTATCG 1201
|||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 1137 GATCCAAAGATACAAAAGTTGGGGGTTGACGCGTTTCCGGCAATAGTTGGCTGGTTATCG 1196
Query 1202 AATGGGGAGAAGCAAGTCTTGAAAACAGGTATCACTGTGAAAAATCTGAAATCAGCTGTC 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AATGGGGAGAAGCAAGTCTTGAAAACAGGTATCACTGTGAAAAATCTGAAATCAGCTGTC 1256
Query 1262 CAGGAACTTGGTAAATTGCTTGAAGGATTAGAGAAGAAGAACAAGAAGGTCTCTTCTAAG 1321
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 1257 CAGGAACTTGGTAAATTACTTGAAGGATTTGAGAAAAAGAACAAGAAGGTCTCTTCT-AG 1315
Query 1322 -AGTCAGGCGGGCCAAGCCCCTAACGAGTCCTCAGAAAAGATACCTCTTCTGTCAAGACC 1380
|||||| |||||||| | |||| ||||| | |||| |||||||||||||| || |
Sbjct 1316 TAGTCAGCCGGGCCAATCACCTAGGGAGTCTTTGGAAAGGATACCTCTTCTGTTGAGGGC 1375
Query 1381 AAATTTTGACTCCATTTGTGGGGAGAACACTCCTGTTTGTATCATTGGTGCCTTCAGATC 1440
||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1376 AAATTTTGATTCTATTTGTGGGGAGAACACTCCTGTTTGTATCATCGGTACCTTCAGATC 1435
Query 1441 GTCAAATGGTAAAGAGAAGCTGCAGTCAATAATGTCCAAGGTATCCCAGAAATCACTCTC 1500
||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1436 TTCACATGGTAAAGAGAAGTTGCAGTCAGTAATGTCCAAGGTATCCCAGAAATCACTCTC 1495
Query 1501 TCGACGACAAGCTTCAACCACAGGTTCTCAGGACACAGTATCCTATTCGCTTCTAGACGC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TCGACGACAAGCTTCAACCACAGGTTCTCAGGACACAGTATCCTATTCGCTTCTAGACGC 1555
Query 1561 AACAAAACAATCTGCGTTCTTGAGCTCCCTTGACAAATCAGAGTTCAAAACTTCTTCTGA 1620
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1556 AACAAAACAATCTGCGTTCTTGAGCTCTCTTGACAAATCAGAGTTCAAAACTTCT---GA 1612
Query 1621 TAAGCTCCTAATAGCTTACAAGCCTCGACGAGGTAAGTTTGCTACATTCAAAGGCGATAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TAAGCTCCTAATAGCTTACAAGCCTCGACGAGGTAAGTTTGCTACATTCAAAGGCGATAT 1672
Query 1681 GACTATTGAGGAAGTTGAGAAATTCGTAGCAGCTGTTCTTAACGGAGACATACAGTTCAC 1740
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1673 GACTATGGAGGAAGTTGAGAAATTCGTAGCAGCTGTTCTCAACGGAGACATACAGTTCAC 1732
Query 1741 AAAGACAAGACAGAAACCCCAGATCAAATGA-AA-Gttttt-tttCATCAGACATTAGTT 1797
||||||||||||||||| |||||||||||| || | |||| |||||||| ||| |||||
Sbjct 1733 GAAGACAAGACAGAAACCTCAGATCAAATGAGAAAGGTTTTATTTCATCATACACTAGTT 1792
Query 1798 TCAGAGATGTACATCGTTTTGGAGGAGAAAAGGGTGATTTTTCACGTTTCCTGTGTTGCA 1857
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1793 TCAGAGATGTACATCGTTTTGGAGGAGAAA-GGGTTATTTTTCACGTTTCCTGTGTTGCA 1851
Query 1858 ATCTGCTTTTGACAGTAAGTTTGTGTATTGTCAAGAGACGTGAAACAGTTCTATAGGACT 1917
|||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1852 ATCTGCTTTTGAGTGAAAGTTTGTGTATTGTCAAGAGACGTGAAATAGTTCTATAGGACT 1911
Query 1918 AGAATTATGTCATTGTACTGAGT 1940
||| ||| |||||||||||||||
Sbjct 1912 AGATTTACGTCATTGTACTGAGT 1934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76561392450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5