BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08980.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478206 jgi|Araly1|478206|fgenesh2_kg.3__907__AT3G08980.1 894 0.0
> Ahg478206 jgi|Araly1|478206|fgenesh2_kg.3__907__AT3G08980.1
Length=624
Score = 894 bits (484), Expect = 0.0
Identities = 561/596 (94%), Gaps = 14/596 (2%)
Strand=Plus/Plus
Query 96 ATAGATGGTTCTATGAATGTTGCTGAGAATCAG-ATATTAGTTAGGCCATCTTGGACATG 154
|||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||
Sbjct 1 ATAGATGGTTCTATGAATTTTGCTGAGAATC-GTTTATTAGATAGGCCATCTTGGACATG 59
Query 155 GGAATCCAGAATATTTTATGGCAAGTGGCGAAGAAATCATTCACTGGAAGTATTATAGGG 214
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 60 GGAATCCAGAATATTTTATGGCAAGTGGCAAAGAAATCATTCACTGGAAGTATTATAGGG 119
Query 215 CTTACCATTTCAGATAGATGTTGTAGCGTTGTTCCAGTGAGAGGAGATTCCATGTCTCCC 274
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 120 CTTACCATTTCAGATAGATGTTGTAGCGTTGTTCCGGTCAGAGGAGATTCCATGTCTCCC 179
Query 275 ACATTTAATCCCCAGCGGAATTCTTATTTAGATGATTATGTACTTGTGGACAAATTTTGC 334
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 ACATTCAATCCCCAGCGGAATTCTTATTTAGATGATTATGTACTCGTGGACAAATTTTGC 239
Query 335 CTTAAGGATTACAAGTTTGCGCGTGGTGATGTTGTAGTGTTCAGCTCTCCGACACATTTC 394
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CTTAAGGATTATAAGTTTGCACGTGGTGATGTTGTAGTGTTCAGCTCTCCGACAAATTTC 299
Query 395 GGAGATAGATACATAAAGAGGATAGTCGGGATGCCTGGTGAATGGATAAGTAGTTCTCGG 454
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 300 GGGGATAGATACATAAAGAGGATCGTCGGGATGCCTGGCGAATGGATAAGTAGTTCTCGG 359
Query 455 GATGTGATCAGAGTCCCAGAAGGTCATTGTTGGGTAGAAGGAGATAACAAAACTTCCAGC 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATGTGATCAGAGTCCCAGAAGGTCATTGTTGGGTAGAAGGAGATAACAAAACTTCCAGC 419
Query 515 TTAGACTCAAGATCCTTTGGCCCTATTCCTTTGGGTTTAATTCAAGGAAGGGTCACTCGT 574
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTAGACTCAAGAACCTTTGGCCCTATTCCTTTGGGTTTAATTCAAGGAAGGGTCACTCGT 479
Query 575 GTCATGTGGCCTCCTCAAAGAATAAGCAAGATCGGTC-GATAATGCTAATGGAGAA---- 629
||| |||||||||||||||||||||||||||| |||| | ||| ||||||||||||
Sbjct 480 GTCTTGTGGCCTCCTCAAAGAATAAGCAAGATTGGTCAG-TAAAGCTAATGGAGAAGAAG 538
Query 630 -----TGAAAAGGACGTCTCCATGTTCCTCAAGATCT-CTATGGGAATTCTCAAAT 679
|||||||||| ||||||||||||||||||| | ||||||||| ||||||||
Sbjct 539 AAGAATGAAAAGGACTTCTCCATGTTCCTCAAGATTTTCTATGGGAACTCTCAAAT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5