BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G08990.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478207 jgi|Araly1|478207|fgenesh2_kg.3__908__AT3G08990.1 1083 0.0
> Ahg478207 jgi|Araly1|478207|fgenesh2_kg.3__908__AT3G08990.1
Length=815
Score = 1083 bits (586), Expect = 0.0
Identities = 687/734 (94%), Gaps = 13/734 (2%)
Strand=Plus/Plus
Query 68 cattttcCACTCGGC-GTCTTGCGAACTACGCAAG-TTTCTTAGTTACTACTATTTCGTT 125
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 32 CATTTTCCACTCGGCGGTCTTGCGAACTACGCAAGTTTTCTTAGTTGCTACTATTTCGTT 91
Query 126 ACC---tttttttGGCATTTTGATCGAAAGCCTTTTCTCGAGATTAACGCTCTCCGCCCT 182
||| |||||||| |||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 92 ACCTTTTTTTTTTGACATTTTGATCGAAAGCTTTTTCTCGAGATTAACGCTCT-CTCCTT 150
Query 183 TTTTTCCATTTTATACCAATTAAATGTTGTGTTTCGTGAAACGCGAACTATTCTCTGGTA 242
||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||
Sbjct 151 TTTTTCCATTTTATACCAATTTAATGTTGTATTTCGTGAAACGCAAACTATTTTCTGGTT 210
Query 243 GGTGGGTTTGTTCGAAATGGGAAGACTATTCGTGATAGACCTCGAAGGACTGGTTTATAG 302
||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 211 GGTGGATTTGTTCGAAATGGGAAGACCATTTGTGATAGACCTCGAAGGACTGGTTTATAG 270
Query 303 CTGCAAGTATTGTCAGACACATTTCGCAGTTACTAATGATATTATCTCAAAGTCATTTCA 362
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 271 CTGCAAGCATTGTCAGACACATTTCGCAGTTACTAATGACATTATCTCAAAGTCATTTCA 330
Query 363 CTGCAAACACGGAAGGGCTTATCTTTTCGACAATGTTGTCAATGTGACGGTTGGAGAGAA 422
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 CTGCAAGCACGGAAGGGCTTATCTTTTCGACAATGTTGTCAATGTAACGGTTGGAGAGAA 390
Query 423 GGAGCATCGCGTCATGATAACTGGTTGGCACACTGTAGCTGACATCTTCTGTGTTAGCTG 482
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GGAGCATCGCGTCATGCTGACTGGTTGGCACACTGTAGCTGACATCTTCTGTGTTAGCTG 450
Query 483 TGGCTCTCTTGTCGGCTGGAAATACGAAATCGCTTACGATAAGTCTCAGAAATACAAGGA 542
|||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 451 TGGCTCTCTTGTTGGCTGGAAATACGAATTCGCTTACGACAAGTCTCAGAAGTACAAGGA 510
Query 543 AGGAAAATTCATCTTAGAAAGGTTTAAGGTGCTTGGGCCCTATGGAGGAGGATACGACAT 602
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 511 AGGAAAATTCATCATAGAAAGGTTTAAGGTGCTTGGGCCCGATGGAGGAGGATACGACAT 570
Query 603 GAACCAGAACGAGCCTATGACTGGAAGCGATGATGAAGAATAAAAATATGGTATCTCTGT 662
||||||| ||||||||||||||||||||||||| | ||||||||||||||||| ||| |
Sbjct 571 GAACCAGGACGAGCCTATGACTGGAAGCGATGA--A-GAATAAAAATATGGTATATCTCT 627
Query 663 TATTT-AACGACCCATTGGAAATACTTGGAAAGTGGTCAATGCTTCGTATAGACTATCGG 721
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 628 TATTTTAACGACCCATTGGAAATATTTGGCAAGTGGTCAATGCTTCGTATAGACTATCGG 687
Query 722 -TGACCGGGAAACTCGCCGGGAA-AAAATTCAACATTTTTTCGTGTAAGCGTTCAAAAGA 779
| ||||| |||||||||||||| |||| |||||||||||||| ||||||||||| ||||
Sbjct 688 CT-ACCGGCAAACTCGCCGGGAAGAAAAATCAACATTTTTTCGGGTAAGCGTTCACAAGA 746
Query 780 AACCAAATATTCAT 793
||||||||||||||
Sbjct 747 AACCAAATATTCAT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5