BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09020.1
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478210 jgi|Araly1|478210|fgenesh2_kg.3__911__AT3G09020.1 1836 0.0
> Ahg478210 jgi|Araly1|478210|fgenesh2_kg.3__911__AT3G09020.1
Length=1239
Score = 1836 bits (994), Expect = 0.0
Identities = 1161/1242 (93%), Gaps = 9/1242 (1%)
Strand=Plus/Plus
Query 1 ATGGATCATGACATCACGACGAAAGTCAGGGCGATGTTTGATCACCGTAGGTTAAACCGC 60
|||||| |||| ||| ||| |||||||| |||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGATAATGAAATCGCGAAGAAAGTCACGGCGATATTTGATCACCGGAGGTTAAACCGC 60
Query 61 TCTGGATCATCACTCTTCACAGCGTTTGCTTCCACGGTTATAGCTCTGGTCGTTTTCACC 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGGATCATCACTCTACACAGCGTTTGCTTCCACGGTTATAGCTCTGGTCGTTTTCACC 120
Query 121 ATCGTTCTCGTCTCTAATTTATCGGTGAGAGAAGATTTCTCAGCGAAGGTGGTGACAATA 180
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 121 ATCGTTCTCGTCTCTAATTTATCGGTGAGAGGAGATTTCTCGGCGAAGGTGGTGACAATA 180
Query 181 GAGATCAAGACAATTGTTCCTTACTTA---CCTCTAAGCTCAGAGAAGGAGGTAAGTGAT 237
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GAGATCAAGACAGTTGTTCCTTACTTATTACCTCTAAGCTCAGAGAAGGAGGTAAGTGAT 240
Query 238 CAAGTCAACAATAACTATTCGATCAAGCAACAAATCACAGTCAAAGAAGA--GATTAACA 295
|||| ||||| ||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 241 CAAGGCAACAGTAACTATTCGATCAAACAACAAATCACAGTCAAAGA-GATTGAT-AACA 298
Query 296 AACTGCAAGTTCTTGAAGTTTTTGGAGGCAAAGACGTGTCGGAGAAGTTTCAACAGAGAG 355
| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 ATCTTCAAGTTATTGAAGTTTTTGGAGGCAAAGGCGTGTCGGAGAAGTTTCAACAGAGAG 358
Query 356 CAACAGAGTTTTTGAGAGATGATTGTGAGGTCAAGTTCATGATGACATGGATCTCACCTG 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAACAGAGTTTTTAAGAGATGATTGTGAGGTCAAGTTCATGATGACATGGATCTCACCTG 418
Query 416 CGGAATTGTTCGGTAAGAGAGAGATATTATCTGTAGAAAGCGTATTCAAATCTCATGCTA 475
||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| ||
Sbjct 419 CGGAATTGTTCGGTAAGAGAGAGATTTTGTCTGTCGAAAGCGTCTTTAAATCTCATCCTC 478
Query 476 GAGGTTGTTTGATGATTTTATCATCCACAATGGATTCTCTTCAAGGGTTTAGAATCCTGA 535
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct 479 GAGGTTGTTTGATGATTTTATCATCCACAATGGATTCTCCTCAAGGGTTTAGTATCTTGA 538
Query 536 AACCGTTTCTTGATCGAGGTTACAGAGTTATGGCGGTCACGCCGGATTTGCCTTTTCTTC 595
|||| ||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 539 AACCATTTCTTGATGGAGGTTACAGAGTAATGGCGGTCACACCGGATTTGCATTTTCTTC 598
Query 596 TCAAGGACACAGCCGGAGAATCTTGGCTTGAAGAGATTCAGACCGGTAAAAGAGATCCAG 655
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 599 TCAAGGACACAGCCGGAGAATCAAGGCTTGAAGAGATTCAGACAGGTAAAAGAGATCCCG 658
Query 656 GAAAGATCTCTCTAGCTCAGAATCTATCAAACCTCATGAGACTTGCTTATTTGT-TCAAA 714
||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| | |||
Sbjct 659 GAAAGATCTCTCTAGCTCAAAATCTATCAAACCTCATGAGACTCGCTTATCTGTAT-AAA 717
Query 715 TTCGGAGGTGTTTATCTAGACACAGACATGATTGTTTTAAAGAGCTTTAAAACTCTAAGG 774
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 718 TTCGGAGGTGTTTATTTAGACACGGACATGATTGTTTTAAAGAGCTTTAAAACTCTTAGG 777
Query 775 AACGTGATCGGTGCGCAGACTCTGGAGCCGGTTTCGAGAAACTGGACAAGATTGAACAAT 834
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 778 AACGTGATCGGTGCACAGACTCTCGAACCGGTTTCGAGAAACTGGACAAGATTGAACAAT 837
Query 835 GCGGTATTGATCTTCGACAAGAATCATCCATTCTTGCTCAAATCCATTGAAGAATTTGCG 894
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 838 GCGGTTTTGATCTTCGACAAGAATCATCCTTTCTTGCTCAAATCCATTGAAGAATTCGCG 897
Query 895 TTGACTTTTAATGGAAACGTTTGGGGACATAACGGACCGTATCTTGTTTCACGAGTGGCT 954
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 898 TTGACTTTTAATGGAAACGTTTGGGGTCATAACGGACCGTATCTTGTTTCTCGAGTGGCT 957
Query 955 CGAGCCGTGGAAGGAACCGATGGCTATAACTTCACCATCTTGACACCTCCTGCGTTTTAT 1014
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 958 CGAGCCGTGGAAGGAACCGATGGCTATAACTTTACAATCATGACACCTCCTGCGTTTTAT 1017
Query 1015 CCAGTGAATTGGGTTGAGATTGAGAAGCTATTCAAGGTTCCAAGAACAGAGAAAGATTCA 1074
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 CCAGTGAATTGGGTTGAGATTGAGAAGCTATTCAAGGTTCCAAGAACCGAGAAAGATTCA 1077
Query 1075 AAGAGAGTTCAAGTCAAGGTTCTTGAAATGCAGAAGAGAAGCTATGGATTGCATTTGTGG 1134
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1078 AAGAGGGTTAAAGTCAAGGTTCTTGAAATGCAAAAGAGAAGCTATGGATTGCATTTGTGG 1137
Query 1135 AATAAGTTTAGCAGAAAATTCGAAATTGAACAAGGAAGTGCCATGGATAAATTGGTTTCA 1194
|||||||||||||| ||||| |||||||||||||||||| |||||||| || | |||||
Sbjct 1138 AATAAGTTTAGCAGTAAATTTGAAATTGAACAAGGAAGTACCATGGATCAACTAATTTCA 1197
Query 1195 AATCAATGTATAATTTGTGACAGTGTTGTATCTGTATCATGA 1236
|||| |||||||| ||||| |||||||| |||||||| |||
Sbjct 1198 GATCACTGTATAATCTGTGATAGTGTTGTCTCTGTATCGTGA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49178562930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5