BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09030.1
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478211 jgi|Araly1|478211|fgenesh2_kg.3__912__AT3G09030.1 2259 0.0
> Ahg478211 jgi|Araly1|478211|fgenesh2_kg.3__912__AT3G09030.1
Length=1660
Score = 2259 bits (1223), Expect = 0.0
Identities = 1486/1610 (92%), Gaps = 29/1610 (2%)
Strand=Plus/Plus
Query 23 CGGTTCAAGCTGAAATCGAAACTCGAACCGGACTGTGATGGTGGTTTCCGATGGCGGCAA 82
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 CGGTTCAAGCTGAAATCGAAACTCGAACCGGACTGTGATGGTGGTTTCCGATGGCGGCGA 60
Query 83 ACGAGTGAAGCTCAACGTCGGCGGCGAGATCTTCGAAACCAACGCGTCGACCATTCAATC 142
||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||
Sbjct 61 GCGAGTGAAGCTCAACGTTGGCGGCGAAATCTTCGAAACCAACGCGTCAACAATTCAGTC 120
Query 143 ATCTTGCCCAGACTCTCTCCTCGCAGCTCTATCGACTTCAACCTCCCATGGATCGAATCC 202
|||||||||||||||||| || || |||||||||||| ||||||||||||| || |||||
Sbjct 121 ATCTTGCCCAGACTCTCTTCTTGCGGCTCTATCGACTCCAACCTCCCATGGCTCAAATCC 180
Query 203 GGTTTTCATCGATCGTGACCCGGAGATTTTCGCCGTCATTCTCAATCTCCTCCGTACTGG 262
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTTTCATCGATCGTGACCCGGAAATTTTCGCCGTCATTCTCAATCTCCTCCGTACTGG 240
Query 263 TCGACTCCCAGCTAATTCCTCCGGCGTTTTTTCCAAGCAAGAGCTACTAGATGAGGCTAT 322
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 241 TCGACTTCCAGCTAATTCCTCCGGCGTTTTCTCCAAGCAAGAGCTACTCGATGAGGCTAT 300
Query 323 GTATTACGGCGTCGAATCACTCCTCAGATTGGCGATGTTACCGCCGCCGCTGCTAGGTTT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTATTACGGCGTCGAATCACTCCTCAGATTGGCGATGTTACCGCCGCCGCTGCTAGGTTT 360
Query 383 CGATGCGTCTCTTGTCTCCACAATCGTACCGGCTGCTGATGGAGTCCCGTCTGCTTTAAC 442
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CGATGCGTCTCTAGTCTCCACAATCGTACCGGCTGCTGATGGAGTTCCGTCTGCTTTAAC 420
Query 443 CGCTACTGCTGGAGACGCCTCTCTGTGGATCGCTCACGGTGGTCAGATCTCCGTCTACGA 502
||| || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 421 CGCCACCGCTGGAGACGCTTCTCTGTGGATCGCTCACGGCGGTCAGATCTCCGTTTACGA 480
Query 503 TTGGAGTCTTTCCCATGCTGGAACCGTCCGTACACATCTCAACGATATCACATCGATCTG 562
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 481 TTGGAGTCTTTCTCATGCTGGAACCGTCCGTACGCATCTCAATGATATCACATCGATCTG 540
Query 563 CCGTGTCTGGGGCGAAGCTGCTGCAATTGGATCTGGATCCGCGTCGGGACTTCATTTCTA 622
|||||| ||| | ||||| |||||||| |||||||||||||||||||| ||||| |||||
Sbjct 541 CCGTGTGTGGAGTGAAGCGGCTGCAATCGGATCTGGATCCGCGTCGGGGCTTCACTTCTA 600
Query 623 CGATCTCTCTGGAGGTCGATACATCGGATCTACGCACTGGACGGATCCGGAAGATCCGAG 682
|||||| ||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||
Sbjct 601 CGATCTGTCTGGAGGTCGATACGTCGGATCTACGCATTGGACTGATCCGGAGGATCCGAG 660
Query 683 GATCCATAAGGCACGCGTCGCCGCCG-TTGCTGATTCGGAAGGTGGAGTATTCGCATCCT 741
|||||||||||||||||| || || | ||||||||||||| |||||||| ||||||||||
Sbjct 661 GATCCATAAGGCACGCGTGGCTGC-GATTGCTGATTCGGACGGTGGAGTTTTCGCATCCT 719
Query 742 TTGATTGCCTGCACAGAGAGAACAGTGTTCTCCAGATCGACAAATCCACTCTTCAAGTCG 801
||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 720 TTGATTGCCTGCATAGAGAGAACAGTGTTCTCCAGATCGACAAATCCACGCTCCAAGTAG 779
Query 802 CCGCCGTGATCGGTCAGCAATCTGGAAACTCGGCTAAAACCACAGTACCGGAGAAACTCC 861
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCGCCGTGATTGGCCAGCAATCTGGAAACTCGGCTAAAACCACAGTACCGGAGAAACTCC 839
Query 862 GGTGGCTGCCAGCGAAAGGTCTTTTGGTGGGATCAGCCGTTCAACGTGGAGTGTTTGGTT 921
||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 840 GGTGGCTGCCAACGAACGGTCTTTTGGTCGGATCAGCCGTTCAACGCGGAGTGTTTGGTT 899
Query 922 GCTCTGGCTACATCCGGATTTGGGACCCAAGGTCCAGGAACATCGTATGGGAAACGAACG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 GCTCTGGCTACATCCGGATTTGGGACCCAAGGTCCAGGAACATCGTATGGGAAACGAGTG 959
Query 982 AGCCAGGATCGGGACGAAGCACTAGGTTTGGAGACGCCTTAGCTGATATGGACGTGGACG 1041
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 AGCCAGGATCGGGACGAAGCACTAGGTTTGGAGACGCCTTAGCTGATATGGACGTGGATG 1019
Query 1042 TTGAAGACTCGATCCTTTTCAAGGTATGTTCCAAGTCAGGAGACCTCGGAATGGCAGACA 1101
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1020 TTGAAGACTCGATCCTCTTCAAGGTATGTTCCAAGTCAGGAGACCTTGGAATGGCTGACA 1079
Query 1102 TTCGTAAATTAGGTGAAGATCCATGGGTATATATGTCAGACGAGAATCCCGGTGCCTGGA 1161
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1080 TCCGTAAATTAGGTGATGATCCATGGGTATATATGTCAGACGAGAATCCCGGGGCGTGGA 1139
Query 1162 AAGCCGGCGACGGAGGTGGTTACAGCGTGGTACATTGTTACAGAAAGCAAGTGTTGGCCG 1221
| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1140 AGGCCGGTGACGGAGGCGGTTACAGCGTTGTACATTGTTACAGAAAGCAAGTGTTGGCGG 1199
Query 1222 CCAGAGGTGGTGCATTAGAGGTATGGTCAAGTGTTAAGGAGAAGACAAGTGGTGATCCAA 1281
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1200 CGAGAGGTGGTGCATTAGAGGTATGGTCAAGTGTTAAGGGGAAGACAAGTGGTGATCCGA 1259
Query 1282 TTCGCAGGAGAAACTTTGTAGACAAGGAAGATGATTCCAAGAGAGGGATGATTTCGAAAA 1341
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCGCAGAAGAAACTTTGTAGACAAGGAAGATGATTCCAAGAGAGGGATGATTTCGAAAA 1319
Query 1342 TTGAAGCAGGAGGTGACCGGCTCTTTGTTTCTCGGGAATGTATGGAAGGTGTGGAGGTCT 1401
||||||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 1320 TTGAAGCCGGAGGTGACCGGCTCTTTGTTTCTCGGGAATTTATGGAAGGTGTTGAAGTCT 1379
Query 1402 GGGAAACTTCTAGTTTCTCCGGTGTGGTATCCGTCGAGTAATG---GTTTCCCGAAGAAC 1458
|||||||||||| |||||| |||||| |||| || ||||||| |||||| |||||||
Sbjct 1380 GGGAAACTTCTAATTTCTCAGGTGTGATATCGGTTGAGTAATAATAGTTTCCAGAAGAAC 1439
Query 1459 GGTGATCGATCACCCTCTGTTTTCCCGGGAAAATCTTGTTAATTTCGCAGGAAAGTAACA 1518
||||| | |||||||||||||||||||||||||||| || |||| || | |
Sbjct 1440 GGTGA-C---CACCCTCTGTTTTCCCGGGAAAATCTTGATAGTTTC--AG-A---T---- 1485
Query 1519 AATCTTCAAACTTTCCAGGGTCTAGTAGAAGACTAGTAGTACTGATTGTCT-CT-ACCCA 1576
| ||||||||||||||||||||||||| ||||| ||||||||||||| | | |
Sbjct 1486 --T-TTCAAACTTTCCAGGGTCTAGTAGA---CTAGTGGTACTGATTGTCTGCAGAATGA 1539
Query 1577 GGTCCACACTTGAACAGAATGAAGAACATCATCAAGATTCACACTTTACC 1626
| || || |||||||||||||||||||||||||||||| ||||||||
Sbjct 1540 AGAACAG-CT-GAACAGAATGAAGAACATCATCAAGATTCAAACTTTACC 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5