BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09032.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478212 jgi|Araly1|478212|fgenesh2_kg.3__913__AT3G09032.1 785 0.0
> Ahg478212 jgi|Araly1|478212|fgenesh2_kg.3__913__AT3G09032.1
Length=612
Score = 785 bits (425), Expect = 0.0
Identities = 539/588 (92%), Gaps = 31/588 (5%)
Strand=Plus/Plus
Query 22 ctctTCACCGCAATTTCAGACAACAAAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG 81
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTTCACCGCAATTTCAG---AC-AAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG 56
Query 82 CTTTAACCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACACGACGGTTTAAG 141
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 CTTTAATCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACATGACGGTTTAAG 116
Query 142 CTCGTCACATCACAGCCGGAGAAGGGTGGTTCTCGTCGGAATTCTCAGTTTTGGTCTAAG 201
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 117 CTCATCACATCACAGCCGGAGAAGGGTGGTTCTCTTCGGAATTCTCAGTTTTGGTCTAAG 176
Query 202 GAGCTCGCCGGCCGCGAGGAAATTGATCCAACGTATTGGAGCAAGATTCGCCAAAACGCT 261
||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 177 GAGCTCGCCGGCCGCCAGGAAATTGATCCACCGTATTGGAGCTAGAGTCGCCAAAACGCT 236
Query 262 GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAAGAAAAACGTCATCGTTTTTGTT 321
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 237 GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAA-AAA--CGTCATCGTTTTTGTT 293
Query 322 GCCTTCGTCGTCGTCGTCTTCTTCTTCGTCAGCTATTTATATGAAGAGGTCAAAGTCTGT 381
||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||| ||
Sbjct 294 GCCTTCGTCATCGTCTTCTTCCTCTTCG--A-CTATTTATATGAAGAGGTCAAAGTCAGT 350
Query 382 AAACGAGACAGAGTCTCATCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC 441
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AAACGAGACAGAGTCTCACCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC 410
Query 442 TTCTTTTCCTCTGTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTTCTTGATTTTACCC 501
||||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 411 TTCTTTTTCTCTTTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTT---GATTTGACCC 467
Query 502 GGTTTGGATTTGCGTCCGGTCAAACAGAGAGCTCCTA-TT-CTCTGttttttttttCT-- 557
||||||||||||||||||||||||||||| ||| || || |||| ||||||||||||
Sbjct 468 GGTTTGGATTTGCGTCCGGTCAAACAGAG--CTCTTACTTTCTCT-TTTTTTTTTTCTTT 524
Query 558 -GTA---ATGTTAGAGAATTG----T---ATAGGAGTGTTTTAAATTT 594
|| |||||||||||||| | |||||||||||||||||||
Sbjct 525 TGTTGTTATGTTAGAGAATTGAGCATTGTATAGGAGTGTTTTAAATTT 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5