BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09032.1 Length=663 Score E Sequences producing significant alignments: (Bits) Value Ahg478212 jgi|Araly1|478212|fgenesh2_kg.3__913__AT3G09032.1 785 0.0 > Ahg478212 jgi|Araly1|478212|fgenesh2_kg.3__913__AT3G09032.1 Length=612 Score = 785 bits (425), Expect = 0.0 Identities = 539/588 (92%), Gaps = 31/588 (5%) Strand=Plus/Plus Query 22 ctctTCACCGCAATTTCAGACAACAAAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG 81 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTTCACCGCAATTTCAG---AC-AAAAATATGTCACGAAGAGCATGCAAAAGAGTAAG 56 Query 82 CTTTAACCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACACGACGGTTTAAG 141 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 57 CTTTAATCCGAACCCAGAAGCCACAGACGAACCCATATTCCCAAAACATGACGGTTTAAG 116 Query 142 CTCGTCACATCACAGCCGGAGAAGGGTGGTTCTCGTCGGAATTCTCAGTTTTGGTCTAAG 201 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 117 CTCATCACATCACAGCCGGAGAAGGGTGGTTCTCTTCGGAATTCTCAGTTTTGGTCTAAG 176 Query 202 GAGCTCGCCGGCCGCGAGGAAATTGATCCAACGTATTGGAGCAAGATTCGCCAAAACGCT 261 ||||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| Sbjct 177 GAGCTCGCCGGCCGCCAGGAAATTGATCCACCGTATTGGAGCTAGAGTCGCCAAAACGCT 236 Query 262 GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAAGAAAAACGTCATCGTTTTTGTT 321 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 237 GCGTTTTATTTCCTTCAGAAGAAATACTACTGATAGAA-AAA--CGTCATCGTTTTTGTT 293 Query 322 GCCTTCGTCGTCGTCGTCTTCTTCTTCGTCAGCTATTTATATGAAGAGGTCAAAGTCTGT 381 ||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||| || Sbjct 294 GCCTTCGTCATCGTCTTCTTCCTCTTCG--A-CTATTTATATGAAGAGGTCAAAGTCAGT 350 Query 382 AAACGAGACAGAGTCTCATCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC 441 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 351 AAACGAGACAGAGTCTCACCGAGCAGAAGCTATTGAAGATTGCATTGAGTTCTTGAACTC 410 Query 442 TTCTTTTCCTCTGTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTTCTTGATTTTACCC 501 ||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 411 TTCTTTTTCTCTTTCGAGATCAAACTCAGTCTCAACGTGGTCTTCTT---GATTTGACCC 467 Query 502 GGTTTGGATTTGCGTCCGGTCAAACAGAGAGCTCCTA-TT-CTCTGttttttttttCT-- 557 ||||||||||||||||||||||||||||| ||| || || |||| |||||||||||| Sbjct 468 GGTTTGGATTTGCGTCCGGTCAAACAGAG--CTCTTACTTTCTCT-TTTTTTTTTTCTTT 524 Query 558 -GTA---ATGTTAGAGAATTG----T---ATAGGAGTGTTTTAAATTT 594 || |||||||||||||| | ||||||||||||||||||| Sbjct 525 TGTTGTTATGTTAGAGAATTGAGCATTGTATAGGAGTGTTTTAAATTT 572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24322421046 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5