BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09035.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1 2161 0.0
Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737 918 0.0
> Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1
Length=1506
Score = 2161 bits (1170), Expect = 0.0
Identities = 1407/1519 (93%), Gaps = 25/1519 (2%)
Strand=Plus/Plus
Query 20 AGTGTGTCTGTGAGGGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATA-TT--TACT 76
||||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 AGTGTATCTGTGAGAGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATATTTACTACT 60
Query 77 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACACTCCACTTACT 136
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 61 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACA--CAACTTACT 118
Query 137 aaaaaaaaTAATTATTTCTTCTTG-AAGAGTGGAATTCTTTCTCGAATCTTAGAAAATTC 195
||||| |||||||||||||| || | |||| ||| |||||||||| |||| |||||
Sbjct 119 ---AAAAA-CATTATTTCTTCTTGAAATA-TGGATTTCATTCTCGAATCCTAGAGAATTC 173
Query 196 CATTTAGAACTAAAGAAGAGAGAGAGATCCAGTTTCTCGTCCCAGTTAAGCTATGGCCAT 255
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 174 CATTTAGAACTAAAGAAGAGAGATAGATCCAGTTTCTCGTCCCATTTAAGCTATGGCCAT 233
Query 256 GTTCAAAACCTTATCTTTTTTGTTCCTTTTGTGCTTTCAGATACATGGAACGGTGGCTGC 315
||||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||
Sbjct 234 GTTCAAAACCTTATCTTTTTTGTTCCTCTTATGCTTTCAGATACATGGAACGATGTCTGC 293
Query 316 AGATGAAAATTCCTTGTTTTCATTCAATGGTTTTG-TAAAATCTCCGAGCTTTGACAAGA 374
|| ||||||||||| ||||||||||||||| |||| | | |||||| || ||||||||||
Sbjct 294 AGCTGAAAATTCCTCGTTTTCATTCAATGGGTTTGCT-ATATCTCCCAGTTTTGACAAGA 352
Query 375 GGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 434
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GTGTTGCTCTGTTTGGGGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 412
Query 435 ACTCAGTGACTCGAAGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAATCTTTTCAAAG 494
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 413 ACTCAGTGACTCGAAGCGTTGGACGAGTCGTTTACAAGAAACCCATCAATCTTTTCCAAG 472
Query 495 GTAAACAGAGGAATTCGAGATCTTTCTCTACTCACTTCTCGTTTTCTTCCATGTCCAACG 554
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 473 GTAAACAGAGGAATTCGAGATCTTTCTCGACTCACTTCTCGTTTTCTTCCATGTCCAGTG 532
Query 555 AGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGGATCTTAGTCTGT 614
||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 533 AGATTAGTGATGGTGCCTTGGCTTTTGTAATGGTTCCAACTAGTTTGGATCTTAGTCTGT 592
Query 615 TTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATCACAATATGCAAAGAACG 674
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 593 TTGGTAACAAGGACAACAGTTCCTCTGCTTTAGGGTTCCTATCACAATATGCAAAGAACG 652
Query 675 AGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGTGCAAGAATTTTAG 734
|||||||| ||||||| ||||||| |||||||| || ||||||| |||||||||| |||
Sbjct 653 AGACAGTTTTTGCTGTTGAGTTTGATATCTCCAAGAGAGGAAACTGTGCAAGAATCTTAA 712
Query 735 TTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGTGACTTGATGATGG 794
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 713 TTGGTAGACCTGAATCTGCCCAAATTAGAAACCTTTCCTTTGTGGGTGACTTGATGATGG 772
Query 795 ACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 854
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ACAATGGAGGGACTTTGAACTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 832
Query 855 TTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTCTCTTTCTCGGTAG 914
|||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| ||||
Sbjct 833 TTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTGGATCCATTCTTCTCTTTCTCAGTAG 892
Query 915 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 952
Query 975 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAATAAGACATCCTCCTC 1034
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 953 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGCTTTGAAATAAGGCATCCTCCTC 1012
Query 1035 CGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAGTTTCAAAGGAGGAGGAAAATG 1094
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||
Sbjct 1013 CGATGTGGATGCATTCAGAGCCGCTTGAACCGAATGAAGTCTCAAAGGAGGAAGA---TG 1069
Query 1095 GTCGAGGGAGAAGTGAGTGTACGCGGAAAATGCTTGGTGCTTTGATCTTTGGTGCAGCTT 1154
||||||| | ||||||||||| |||| ||||||||||||||| | |||||||||||||
Sbjct 1070 GTCGAGGTACAAGTGAGTGTATATGGAAGATGCTTGGTGCTTTGGTTTTTGGTGCAGCTT 1129
Query 1155 GTGGAGCCTTAGGGGCACTGCTGGGTTTGTATCTCTGGACGATATGCCGTGTTAGGCGGT 1214
|||||||||||||| || |||| | ||||||| |||||||||||||||||||||||||||
Sbjct 1130 GTGGAGCCTTAGGGACAATGCTTGCTTTGTATATCTGGACGATATGCCGTGTTAGGCGGT 1189
Query 1215 CAATGGCCGTGGTTCCAGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTA-GT- 1272
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 CAATGGCCGTGGTTCCTGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTAAGTA 1249
Query 1273 -TT-GGTTTTGGTGTTGAAAAGTTGTCTTGTGTTGTGGTGTAAATTTAGGAACTTTCT-C 1329
|| ||||||| | ||||||||||||| || |||||||||||||||||||||||| || |
Sbjct 1250 GTTTGGTTTTGTT-TTGAAAAGTTGTCCTGCGTTGTGGTGTAAATTTAGGAACTT-CTTC 1307
Query 1330 TTCTTCTTCTTCCCTCTTGTTT-ACTTGATCGTTCTTTAGTGATTCTTATGTCTGTTTAC 1388
|||||||||||||||||||||| || ||||||||||||||| |||||||||| ||| |||
Sbjct 1308 TTCTTCTTCTTCCCTCTTGTTTTACCTGATCGTTCTTTAGTTATTCTTATGTTTGTGTAC 1367
Query 1389 TTAGTTGCAGGTTTTGTGAAATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1448
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TTAGTTGCAGGTTTTGTGGTATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1427
Query 1449 AAGCTTATTGATATGTTGC-AAATTAACTTAGTTGTTCATGTTGTTCTTGATCCATTTGG 1507
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1428 AAGCTTATTGGTATGTTGCCAAATTAACTTAGTTGTTGATGTTGTTCTTGATCCATTTGG 1487
Query 1508 ATTATGAGCTGTGCATTTA 1526
|| ||||| ||||||||||
Sbjct 1488 ATGATGAGTTGTGCATTTA 1506
> Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737
Length=942
Score = 918 bits (497), Expect = 0.0
Identities = 772/900 (86%), Gaps = 38/900 (4%)
Strand=Plus/Plus
Query 365 TTTGACAAGAGGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATT 424
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 16 TTTGACAAGAGTGTTGCTCTGTTTGGAGATTCCAAGCTGGTCAATGACAGTTCTTCGATT 75
Query 425 CAGCTGACTGACTCAGTGACTCGA-AGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAA 483
||||||||||||||||||| || | |||| || |||||| |||| | |||||||||| |
Sbjct 76 CAGCTGACTGACTCAGTGAGTC-AGAGCGAGGGACGAGTCTTTTATAGGAAACCCATCCA 134
Query 484 TCTTTTCAAAGGTAAACAGAGGAATTC-GAGATCTTTCTCTACTCACTTCTCGTTTTCTT 542
||| |||||||||||| ||| ||| || | || |||||| ||| |||||||| || ||
Sbjct 135 TCTATTCAAAGGTAAAGAGAAGAACTCGGTTAT-TTTCTCGACTTACTTCTCG--TT-TT 190
Query 543 CCATGTCCAACGAGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGG 602
| ||| |||| |||||| | | |||||||||||||||||||||||||||| || |||||
Sbjct 191 CGATGCCCAATGAGATT-G-G-TGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGG 247
Query 603 ATCTTAGTCTGTTTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATC-ACAA 661
|||||||||||||||||||||| || |||||||||||||||| || ||| || | | |
Sbjct 248 ATCTTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTCGGGTTTCTA-CTAGAG 306
Query 662 TATGCAAAGAACGAGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGT 721
||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||| ||
Sbjct 307 TATGCAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGT 366
Query 722 GCAAGAATTTTAGTTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGT 781
|||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 367 GCAAGAATCTTAATTGGTAGACCTGAATCTGCTAAAATTAGAAATCTTTCGTTTGTGGGT 426
Query 782 GACTTGATGATGGACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCT 841
|||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 427 GACTTGATGATGAACAATGGAGGGACTTTGAGCTGTATGATTGATTATGAGGCAAGTTCT 486
Query 842 AAGAGAATGATGGTTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTC 901
||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 487 AAGAGAATGATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTTGATCCATTCTTC 546
Query 902 TCTTTCTCGGTAGACTTGGCCAAGT-TATGGAAAGGTGGTGAAGTCACTG-TGGGTTTAA 959
||||||||||||||||||| ||| | ||||||||||||||||||| || |||||||||
Sbjct 547 TCTTTCTCGGTAGACTTGGAGAAGACT-TGGAAAGGTGGTGAAGTCA-TGGTGGGTTTAA 604
Query 960 GCTCTGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAA 1019
||||||| |||||||||||||| | ||| |||||||||||||||||||||| |||||||
Sbjct 605 GCTCTGCTAATGGGAACTCTTC--C-AAGCCACATTTTCTCCATTCATGGAGCTTTGAAA 661
Query 1020 TAAGACATCCTCCTCCGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAG-TTTCA 1078
|||| |||| | |||||| ||| |||| || ||| ||| ||||||||||| ||| |
Sbjct 662 TAAGGCATCTTGATCCGATATGGGTGCAACCAACGCCATTTGGACCGAATGAAGGTTTGA 721
Query 1079 AA--GGAGG-----A-GGAA----AAT-GGTC-GAGGGAGAAGTGAGTGTACGCGGAAAA 1124
| ||| | | |||| || || | ||| |||||||||||||| ||| ||
Sbjct 722 AGCCGGACGTTTCCACGGAAGTGGAAGAGGGCCGAGAGAGAAGTGAGTGTATATGGAGAA 781
Query 1125 TGCTTGGTGCTTTGATCTTTGGTGCAGCT-TGTGGAGCCTTAGGGGCACTGCTGGGTT-T 1182
|||||||| ||||| |||| ||||||| | |||||||||||||||||| || | | | |
Sbjct 782 TGCTTGGTACTTTGGTCTTGGGTGCAG-TATGTGGAGCCTTAGGGGCAATG-TCAGCTAT 839
Query 1183 GTATCTCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 1242
|||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 840 GTATCTTTGGACAATATGCGGTGTTAGGAGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5