BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09035.1 Length=1528 Score E Sequences producing significant alignments: (Bits) Value Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1 2161 0.0 Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737 918 0.0 > Ahg478213 jgi|Araly1|478213|fgenesh2_kg.3__914__AT3G09035.1 Length=1506 Score = 2161 bits (1170), Expect = 0.0 Identities = 1407/1519 (93%), Gaps = 25/1519 (2%) Strand=Plus/Plus Query 20 AGTGTGTCTGTGAGGGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATA-TT--TACT 76 ||||| |||||||| |||||||||||||||||||||||||||||||||||| || |||| Sbjct 1 AGTGTATCTGTGAGAGCGAATCAATGTCTCTGCTTTCTCCAGAAGATGATATTTACTACT 60 Query 77 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACACTCCACTTACT 136 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 61 TTTTGTGTCAATTAGCTGTATAACGTCTTCTTCACATAAAACAAGAACA--CAACTTACT 118 Query 137 aaaaaaaaTAATTATTTCTTCTTG-AAGAGTGGAATTCTTTCTCGAATCTTAGAAAATTC 195 ||||| |||||||||||||| || | |||| ||| |||||||||| |||| ||||| Sbjct 119 ---AAAAA-CATTATTTCTTCTTGAAATA-TGGATTTCATTCTCGAATCCTAGAGAATTC 173 Query 196 CATTTAGAACTAAAGAAGAGAGAGAGATCCAGTTTCTCGTCCCAGTTAAGCTATGGCCAT 255 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 174 CATTTAGAACTAAAGAAGAGAGATAGATCCAGTTTCTCGTCCCATTTAAGCTATGGCCAT 233 Query 256 GTTCAAAACCTTATCTTTTTTGTTCCTTTTGTGCTTTCAGATACATGGAACGGTGGCTGC 315 ||||||||||||||||||||||||||| || ||||||||||||||||||||| || |||| Sbjct 234 GTTCAAAACCTTATCTTTTTTGTTCCTCTTATGCTTTCAGATACATGGAACGATGTCTGC 293 Query 316 AGATGAAAATTCCTTGTTTTCATTCAATGGTTTTG-TAAAATCTCCGAGCTTTGACAAGA 374 || ||||||||||| ||||||||||||||| |||| | | |||||| || |||||||||| Sbjct 294 AGCTGAAAATTCCTCGTTTTCATTCAATGGGTTTGCT-ATATCTCCCAGTTTTGACAAGA 352 Query 375 GGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 434 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 GTGTTGCTCTGTTTGGGGATTCGAAGCTGGTCAATGACAGTTCTTTGATTCAGCTGACTG 412 Query 435 ACTCAGTGACTCGAAGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAATCTTTTCAAAG 494 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 413 ACTCAGTGACTCGAAGCGTTGGACGAGTCGTTTACAAGAAACCCATCAATCTTTTCCAAG 472 Query 495 GTAAACAGAGGAATTCGAGATCTTTCTCTACTCACTTCTCGTTTTCTTCCATGTCCAACG 554 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 473 GTAAACAGAGGAATTCGAGATCTTTCTCGACTCACTTCTCGTTTTCTTCCATGTCCAGTG 532 Query 555 AGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGGATCTTAGTCTGT 614 ||||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 533 AGATTAGTGATGGTGCCTTGGCTTTTGTAATGGTTCCAACTAGTTTGGATCTTAGTCTGT 592 Query 615 TTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATCACAATATGCAAAGAACG 674 ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 593 TTGGTAACAAGGACAACAGTTCCTCTGCTTTAGGGTTCCTATCACAATATGCAAAGAACG 652 Query 675 AGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGTGCAAGAATTTTAG 734 |||||||| ||||||| ||||||| |||||||| || ||||||| |||||||||| ||| Sbjct 653 AGACAGTTTTTGCTGTTGAGTTTGATATCTCCAAGAGAGGAAACTGTGCAAGAATCTTAA 712 Query 735 TTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGTGACTTGATGATGG 794 ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 713 TTGGTAGACCTGAATCTGCCCAAATTAGAAACCTTTCCTTTGTGGGTGACTTGATGATGG 772 Query 795 ACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 854 |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 773 ACAATGGAGGGACTTTGAACTGTATGATTGAGTATGAGGCAAGTTCTAAGAGAATGATGG 832 Query 855 TTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTCTCTTTCTCGGTAG 914 |||||||||||||| |||||||| |||||||||| ||||| |||||||||||||| |||| Sbjct 833 TTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTGGATCCATTCTTCTCTTTCTCAGTAG 892 Query 915 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 ACTTGGCCAAGTTATGGAAAGGTGGTGAAGTCACTGTGGGTTTAAGCTCTGCCAATGGGA 952 Query 975 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAATAAGACATCCTCCTC 1034 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 953 ACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGCTTTGAAATAAGGCATCCTCCTC 1012 Query 1035 CGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAGTTTCAAAGGAGGAGGAAAATG 1094 |||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct 1013 CGATGTGGATGCATTCAGAGCCGCTTGAACCGAATGAAGTCTCAAAGGAGGAAGA---TG 1069 Query 1095 GTCGAGGGAGAAGTGAGTGTACGCGGAAAATGCTTGGTGCTTTGATCTTTGGTGCAGCTT 1154 ||||||| | ||||||||||| |||| ||||||||||||||| | ||||||||||||| Sbjct 1070 GTCGAGGTACAAGTGAGTGTATATGGAAGATGCTTGGTGCTTTGGTTTTTGGTGCAGCTT 1129 Query 1155 GTGGAGCCTTAGGGGCACTGCTGGGTTTGTATCTCTGGACGATATGCCGTGTTAGGCGGT 1214 |||||||||||||| || |||| | ||||||| ||||||||||||||||||||||||||| Sbjct 1130 GTGGAGCCTTAGGGACAATGCTTGCTTTGTATATCTGGACGATATGCCGTGTTAGGCGGT 1189 Query 1215 CAATGGCCGTGGTTCCAGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTA-GT- 1272 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1190 CAATGGCCGTGGTTCCTGAGGAATGTGCTATTGAACAAGGCAAGAAGTAGTGAGTAAGTA 1249 Query 1273 -TT-GGTTTTGGTGTTGAAAAGTTGTCTTGTGTTGTGGTGTAAATTTAGGAACTTTCT-C 1329 || ||||||| | ||||||||||||| || |||||||||||||||||||||||| || | Sbjct 1250 GTTTGGTTTTGTT-TTGAAAAGTTGTCCTGCGTTGTGGTGTAAATTTAGGAACTT-CTTC 1307 Query 1330 TTCTTCTTCTTCCCTCTTGTTT-ACTTGATCGTTCTTTAGTGATTCTTATGTCTGTTTAC 1388 |||||||||||||||||||||| || ||||||||||||||| |||||||||| ||| ||| Sbjct 1308 TTCTTCTTCTTCCCTCTTGTTTTACCTGATCGTTCTTTAGTTATTCTTATGTTTGTGTAC 1367 Query 1389 TTAGTTGCAGGTTTTGTGAAATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1448 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1368 TTAGTTGCAGGTTTTGTGGTATGACTTTTCACATGTAAAATCTAAACTGTGAGAAGATGT 1427 Query 1449 AAGCTTATTGATATGTTGC-AAATTAACTTAGTTGTTCATGTTGTTCTTGATCCATTTGG 1507 |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1428 AAGCTTATTGGTATGTTGCCAAATTAACTTAGTTGTTGATGTTGTTCTTGATCCATTTGG 1487 Query 1508 ATTATGAGCTGTGCATTTA 1526 || ||||| |||||||||| Sbjct 1488 ATGATGAGTTGTGCATTTA 1506 > Ahg317721 jgi|Araly1|317721|fgenesh1_pm.C_scaffold_3000737 Length=942 Score = 918 bits (497), Expect = 0.0 Identities = 772/900 (86%), Gaps = 38/900 (4%) Strand=Plus/Plus Query 365 TTTGACAAGAGGGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTTGATT 424 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 16 TTTGACAAGAGTGTTGCTCTGTTTGGAGATTCCAAGCTGGTCAATGACAGTTCTTCGATT 75 Query 425 CAGCTGACTGACTCAGTGACTCGA-AGCGTTGGTCGAGTCGTTTACAAGAAACCCATCAA 483 ||||||||||||||||||| || | |||| || |||||| |||| | |||||||||| | Sbjct 76 CAGCTGACTGACTCAGTGAGTC-AGAGCGAGGGACGAGTCTTTTATAGGAAACCCATCCA 134 Query 484 TCTTTTCAAAGGTAAACAGAGGAATTC-GAGATCTTTCTCTACTCACTTCTCGTTTTCTT 542 ||| |||||||||||| ||| ||| || | || |||||| ||| |||||||| || || Sbjct 135 TCTATTCAAAGGTAAAGAGAAGAACTCGGTTAT-TTTCTCGACTTACTTCTCG--TT-TT 190 Query 543 CCATGTCCAACGAGATTGGTGATGATGTCTTGGCTTTTGTAATGGTTCCATCTAGTTTGG 602 | ||| |||| |||||| | | |||||||||||||||||||||||||||| || ||||| Sbjct 191 CGATGCCCAATGAGATT-G-G-TGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGG 247 Query 603 ATCTTAGTCTGTTTGGTAAGAAGGACAACAGTTCCTCTGCTTTAGGTTTTTTATC-ACAA 661 |||||||||||||||||||||| || |||||||||||||||| || ||| || | | | Sbjct 248 ATCTTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTCGGGTTTCTA-CTAGAG 306 Query 662 TATGCAAAGAACGAGACAGTTGTTGCTGTCGAGTTTGGTATCTCCAGGACAGGAAACAGT 721 ||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||| || Sbjct 307 TATGCAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGT 366 Query 722 GCAAGAATTTTAGTTGGTAGACCTGAATCTGCTGAAATTAGAAACCTTTCGTTTGTGGGT 781 |||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 367 GCAAGAATCTTAATTGGTAGACCTGAATCTGCTAAAATTAGAAATCTTTCGTTTGTGGGT 426 Query 782 GACTTGATGATGGACAATGGAAGGACTCTGAGCTGTATGATTGAGTATGAGGCAAGTTCT 841 |||||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| Sbjct 427 GACTTGATGATGAACAATGGAGGGACTTTGAGCTGTATGATTGATTATGAGGCAAGTTCT 486 Query 842 AAGAGAATGATGGTTCGATTCAGAAAATCTGGTTCGGTAAAGCTGTTTGATCCGTTCTTC 901 ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| Sbjct 487 AAGAGAATGATGGTTCGATTCAGAAAACCTGGTTCGATAAAGCTGTTTGATCCATTCTTC 546 Query 902 TCTTTCTCGGTAGACTTGGCCAAGT-TATGGAAAGGTGGTGAAGTCACTG-TGGGTTTAA 959 ||||||||||||||||||| ||| | ||||||||||||||||||| || ||||||||| Sbjct 547 TCTTTCTCGGTAGACTTGGAGAAGACT-TGGAAAGGTGGTGAAGTCA-TGGTGGGTTTAA 604 Query 960 GCTCTGCCAATGGGAACTCTTCTTCCAAGGCACATTTTCTCCATTCATGGAGATTTGAAA 1019 ||||||| |||||||||||||| | ||| |||||||||||||||||||||| ||||||| Sbjct 605 GCTCTGCTAATGGGAACTCTTC--C-AAGCCACATTTTCTCCATTCATGGAGCTTTGAAA 661 Query 1020 TAAGACATCCTCCTCCGATGTGGATGCATTCAGTGCCGCTTGAACCGAATGAAG-TTTCA 1078 |||| |||| | |||||| ||| |||| || ||| ||| ||||||||||| ||| | Sbjct 662 TAAGGCATCTTGATCCGATATGGGTGCAACCAACGCCATTTGGACCGAATGAAGGTTTGA 721 Query 1079 AA--GGAGG-----A-GGAA----AAT-GGTC-GAGGGAGAAGTGAGTGTACGCGGAAAA 1124 | ||| | | |||| || || | ||| |||||||||||||| ||| || Sbjct 722 AGCCGGACGTTTCCACGGAAGTGGAAGAGGGCCGAGAGAGAAGTGAGTGTATATGGAGAA 781 Query 1125 TGCTTGGTGCTTTGATCTTTGGTGCAGCT-TGTGGAGCCTTAGGGGCACTGCTGGGTT-T 1182 |||||||| ||||| |||| ||||||| | |||||||||||||||||| || | | | | Sbjct 782 TGCTTGGTACTTTGGTCTTGGGTGCAG-TATGTGGAGCCTTAGGGGCAATG-TCAGCTAT 839 Query 1183 GTATCTCTGGACGATATGCCGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 1242 |||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 840 GTATCTTTGGACAATATGCGGTGTTAGGAGGTCAATGGCCGTGGTTCCAGAGGAATGTGC 899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57211547990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5