BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09050.1
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478215 jgi|Araly1|478215|fgenesh2_kg.3__916__AT3G09050.1 1476 0.0
> Ahg478215 jgi|Araly1|478215|fgenesh2_kg.3__916__AT3G09050.1
Length=1070
Score = 1476 bits (799), Expect = 0.0
Identities = 980/1061 (92%), Gaps = 37/1061 (3%)
Strand=Plus/Plus
Query 59 ATCTATAATAATGTCTCAAATATAGGGTCTTTTATGCAAATACTTTAAAACTCAAAACTG 118
||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1 ATCAATAATAATCTCTCAAATATAGGGTCTCTTATGCAAACACTTTAAAACTCAAAACTT 60
Query 119 GTTTTGGATAATGCGTAAACTAAATTAAAAAACGAGAGGTGGGTTACTCTGAAACGAGCC 178
||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 61 GTTTTGGATAATGCGTAAACTAAATTAAAGAACGAGA----GGTTACTGTGAAACGAGCC 116
Query 179 TTCTTCTTCTTCGTTGAAGAAAACATAGAAGATGATGAACACACTTCATGCATTTCAGAC 238
|| || ||||| || | |||||| ||||||| |||||||||||||||||
Sbjct 117 -TC-TC-TCTTC-TT--------C----AAGATGGTGAACACGCTTCATGCATTTCAGAC 160
Query 239 AACCTTAACACCAAACTTTCATGTTCTTTTCAATGCCTCGAGACATTCTC-TTTCCCGAC 297
|||||||||||||||||| |||||||||||||||||||||||||| || | | ||| ||
Sbjct 161 AACCTTAACACCAAACTTCCATGTTCTTTTCAATGCCTCGAGACA-TCCCATCTCCAGAA 219
Query 298 CCCAATTTCTCTGTCTCTCCAAATCGGGAGACGGAACTTCAGATTCTGATTCTGATCCCG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CCCAATTTCTCTGTCTCTCCAAATCGGGAGACGGAACTTCAGATTCTGATTCTGATCCCG 279
Query 358 ACCCTCCAAAACCCGAAGGCGATACTCGCAGGCAAGAACTCTTAGCTAGGATCGCCATGA 417
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 280 ACCCTCCAAAACCCGAAGGCGATACTCGGAGACAAGAACTCTTAGCCAGGATCGCCATGA 339
Query 418 TTCAGACATCGAAGGTCCGTTTGACGGATTTCTTGGACGAGAGATCAGAGTATCTCACCA 477
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 340 TTCAGACTTCGAAGGTCCGTTTAACGGATTTCTTGGACGAGCGATCAGAGTATCTCACCA 399
Query 478 AGTTTGCTGAAGAAGCCAATGCGGAGTTTGACAAGGTTGGAGAAGACGCCATGAAAGACC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AGTTTGCTGAAGAAGCCAATGCGGAGTTTGACAAGGTTGGAGAAGACGCCATGAAAGACC 459
Query 538 TTGACGAAGCTAGCACAAGGATACTGGAGAATATCGAAAGCAAGATGCAAGCTTTTGAGG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTGACGAAGCTAGCACAAGGATACTGGAGAATATCGAAAGCAAGATGCAAGCTTTTGAGG 519
Query 598 AATCTGCGGGATTGAACAGATTAGAGATCGAGGAGAACGATAATAAGTTGGCTGAGTTTG 657
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 520 AATCTGCGGGATTGAACAGATTAGAGATAGAGGAGAACGATAATAAGTTGGCTGAGTTTG 579
Query 658 AGGAGAAGATTCAAGTAGACAGGAATGAAGGATTGTTCTTTAAAAGCTTACGTGACAAAA 717
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 580 AGGAGAAGATCCAAGTAGACAGGAATGAAGGATTGTTCTTTAAAAGCTTGCGTGACAAAA 639
Query 718 AACCAGTGGATAGAGAGCAAGCTAGAGAGGAAACTGAGAAAATACAAGAGGTTACCAAAG 777
|||| ||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||
Sbjct 640 AACCGGTGGATAGAGAGCAAGCTAAACAGGAAGCTGATAAAATACAAGAGGTTACCAAAG 699
Query 778 AAAGTGCAGGATCAAAGTCAAGAAGGAATATTTACCTCGGGTTAATTGGGATTGTGGTTC 837
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 700 AAAGTGTGGGATCAAAGTCAAGAAGGAATATTTACCTCGGGTTGATTGGGATCGTGGTTC 759
Query 838 TCGCAATTGCTGATTCCTTCGTTTCTTCACCGGATTGGAGAAAAGTCGCAATTCTTGGAG 897
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TCGCAATTGCTGATTCCTTTGTTTCTTCACCGGATTGGAGAAAAGTCGCAATTCTTGGAG 819
Query 898 CTATCCTTGTCCCACTGCTCACTCAATTCGTATACGAGCAGACATTATTATCAGAAG--- 954
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 820 CTATTCTTGTCCCACTGCTCACTCAATTCGTCTACGAGCAGACATTATTATCAGAAGAAG 879
Query 955 CAGATAAGGGAAAGGAAAACAAGAAGGAATGAACGATAGAAGCCGACAAACTCTGTATTA 1014
||||||||||||||| | |||||||||||||||||| || | || | |||| |
Sbjct 880 CAGATAAGGGAAAGGGAGACAAGAAGGAATGAACGA--GA-G---AC----T--GTATCA 927
Query 1015 ATCGAAAGAGATGAATATAACTTGATGGCATAGACCCAAAGTGTGAAACTTATCACTTTA 1074
|||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 928 ATCGAAAGGGATAAATATAACTTGATCGCATAGACCCAAAGTGTGAAACTTATCACTTTT 987
Query 1075 GGTTTGATGCGTCAAGCTACAGCTTTTCTTTTGCATCATCA 1115
|||| ||||||||||||||||| ||||||||||||||||||
Sbjct 988 GGTTAGATGCGTCAAGCTACAGTTTTTCTTTTGCATCATCA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5