BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09070.1
Length=2487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1 2364 0.0
> Ahg478217 jgi|Araly1|478217|fgenesh2_kg.3__918__AT3G09070.1
Length=3230
Score = 2364 bits (1280), Expect = 0.0
Identities = 1563/1692 (92%), Gaps = 49/1692 (3%)
Strand=Plus/Plus
Query 815 AAGAGGAGGAGGAGGAAGACTACGTTGAAGCTGGCGACTTTGAGATTCTCAATGATTCCG 874
|||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 AAGAGGAGGAAGA-G-A-ACTACGTTGAAGCTGGCGACTTTGAGATTCTCAATGATTCCG 1625
Query 875 GCGAACTAA-TGAGGGAAAAAAGCGACGAGATTGTTGAAGTTAGAGAGGAGATTGAAGAA 933
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1626 GCGAACTAATTG-GGGAAAAACGCGACGAGATTGTTGAAGTTAGAGAGGAGATTGAAGAA 1684
Query 934 GCGGTGAAACCA-ACAAAGGGTTTAAGCGAAGAGGAGTTAAAGCCAATAAAGGATTACAT 992
|||| ||||||| | |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1685 GCGGAGAAACCAGA-AAAGGGTTTAAGCGAAGAGGAGTTGAAGCCAATTAAGGATTACAT 1743
Query 993 AGATCTTGATTCTCAAACCAAGAAGCCATCGGTACGACGGAGTTTTTGGTCGGCGGCCTC 1052
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1744 AGATCTTGATACTCAAACCAAGAAGCCATCGGTGCGACGGAGTTTTTGGTCGGCGGCCTC 1803
Query 1053 TGTTTTCAGCAAGAAGCTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGTAA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1804 TGTTTTCAGCAAGAAGCTTCAGAAATGGAGGCAGAATCAAAAGATGAAGAAGCGGCGGAA 1863
Query 1113 CGGCGGCGACCATCGGCCAGGATCAGCTAGATTACCGGTGGAGAAA-CCGATTGGGAGAC 1171
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1864 CGGCGGCGACCATCGGCCGGGATCAGCTAGATTACCGGTGGA-AAAGCCGATTGGGAGAC 1922
Query 1172 AGCTCCGGGATACTCAATCGGAGATTGCTGATTACGGATAT-GGTCGGAGGTCGTGCGAT 1230
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1923 AGCTCCGAGATACTCAATCGGAGATTGCTGATTACGGAT-TCGGTCGGAGGTCGTGCGAT 1981
Query 1231 ACCGACCCTCGATTCTCTCTAGACGCCGGAAGATTCTCTCTTGACGCCGGTAGATTCTCC 1290
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1982 ACTGACCCTCGATTCTCTCTCGACGCCGGAAGATTCTCTCTTGACGCCGGAAGATTCTCC 2041
Query 1291 GTTGACATCGGTAGGATCTCGCTTGATGATCCTCGTTATTCGTTTGACGAGCCGAGAGCT 1350
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 2042 GTTGATATCGGTAGGATCTCGCTTGATGACCCTCGTTACTCGTTTGACGAGCCGAGAGCT 2101
Query 1351 TCTTGGGACGGGTCTTTGATTGGACGGACA-ATGTTTCCTCCCGCCGCGAGAGCTCCTCC 1409
||||||||||| |||||||| ||||||||| | ||||| || |||| ||||||||||||
Sbjct 2102 TCTTGGGACGGATCTTTGATCGGACGGACAGCT-TTTCCACCTGCCGTGAGAGCTCCTCC 2160
Query 1410 GCCGCCGTCAATGCTCTCGGTGGTGGAGGATGCGCCGCCGCCGGTGCACCGTCACGTAAC 1469
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 GCCGCCGTCAATGCTTTCTGTGGTGGAGGATGCGCCGCCGCCGGTGCACCGTCACGTAAC 2220
Query 1470 CCGAGCGGATATGCAGTTTCCGGTGGAAGAACCGGCGCCACCACCACCGGTGGTTAACCA 1529
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2221 CCGAGCGGATATGCAGTTTCCGGTGGAAGAACCGGCGCCGCCACCACCGGTGGTTAACCA 2280
Query 1530 AACCAACGGTGTGTCAGACCCGGTTATCATACCC-GGCGGATCAATCCAAACCCGAGACT 1588
|| ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 2281 AAGTAACGGTGTGTCCGACCCGGTTATCAT-CCCGGGCGGGTCAATCCAAACCCGAGACT 2339
Query 1589 ACTATACTGACTCATCGTCAAGGAGGCGGAAAAGTCTCGACAGGTCTAGTAGCTCCATGA 1648
|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 2340 ACTACACTGACTCATCGTCTCGGAGGCGGAAAAGTCTCGACAGGTC---TAGCTCCATGA 2396
Query 1649 GGAAAACGGCTGCAGCCGTTGTGGCGGATATGGACGAGCCAAAGCTTTCAGTGTCGTCGG 1708
|||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2397 GGAAGACGGCTGCATCGGTTGTGGCGGATATGGACGAGCCAAAACTTTCAGTGTCGTCGG 2456
Query 1709 CTATATCAATTGACGCTTACTCAGGATCACTGAGAGATAACAACAACTACGCCGTGGAGA 1768
|||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||
Sbjct 2457 CTATATCAATTGACGCTTACTCAGGATCACTGAGAG---ACAACAATTACGCGGCGGAGA 2513
Query 1769 CGGCAGATAACGGATCTTTCCGGGAACCGGCGATGATGATCGGCGATAGGAAAGTGAATA 1828
|| | |||||||| | |||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2514 CGACGGATAACGGCTTTTTCCGGGAACCGGCGGTGATGATCGGCGAGAGGAAAGTGAATA 2573
Query 1829 GTAACGATAATAACAAGAAGTCGAGACGGTGGGGGAAGTGGAGCATTTTAGGACTTATTT 1888
||||||||| ||||||||| || ||||| |||||||| |||||||| ||||| |||||||
Sbjct 2574 GTAACGATAGTAACAAGAAATCAAGACGATGGGGGAAATGGAGCATCTTAGGGCTTATTT 2633
Query 1889 ACAGGAAGAGTGTTAACAAGTATgaggaagaggaggaggaggaagaggataggtatagga 1948
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 2634 ACAGGAAGAGTGTTAACAAGTATGAGG-A-A-GAGGAGGAGGAAGAGGATAGGTATAGGA 2690
Query 1949 gATTAAACGGTGGAATGGTGGAGAGATCGTTATCGGAGTCATGGCCggagctgaggaatg 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2691 GATTAAACGGTGGAATGGTGGAGAGATCGTTATCGGAGTCATGGCCGGAGCTGAGAAACG 2750
Query 2009 gaggaggaggaggaggagggccgaggatggtgaggagtaatagcaatgtgagctggagga 2068
| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2751 GTGGAGTAGTAGGAGGAGGTCCGAGGATGGTGAGGAGTAATAGCAATGTGAGCTGGAGGA 2810
Query 2069 gTTCCGGAGGTGGATCAGCGAGGAAAGTCAACGGATTGGATAGGAGGAATAAGAGTTCAA 2128
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2811 GTTCCGGTGGTGGATCAGCGAGGAAAGTTAACGGATTGGATAGGAGGAATAAGAGTTCAA 2870
Query 2129 GGTACTCACCTAAGAATGGGGAAAACGGAATGTTGAAGTTTTACTTGCCACATATGAAAG 2188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2871 GGTACTCACCTAAGAATGGGGAAAACGGAATGTTGAAGTTTTACTTGCCACATATGAAAG 2930
Query 2189 CTAGTCGGAGAATGAGCGGTACAGGAGGAGCAGGAGGTGGCGGCGGCGGAGG-G-----T 2242
||| ||||||||||||||| ||||||||| ||| ||||| || || ||||| | |
Sbjct 2931 GTAGCCGGAGAATGAGCGGTGCAGGAGGAGGAGGCGGTGGTGGTGGTGGAGGCGGCGGGT 2990
Query 2243 GGGCGAATAGTCACGGGCATTCTATAGCGAGGAGTGTAATGAGGCTGTATTGATCAACAA 2302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2991 GGGCGAATAGTCACGGGCATTCTATAGCGAGGAGTGTAATGAGGCTGTATTGATCAACAA 3050
Query 2303 AATTGTTCATTGGATGGTTTAA---TT-AGCTCTATGAAG-CTGAACCTTTG-TTTTTAG 2356
| ||||||||||||||||||| || |||||||||||| || || ||||| |||||
Sbjct 3051 A-TTGTTCATTGGATGGTTTAGGGGTTTAGCTCTATGAAGTCTCAAGCTTTGGTTTTT-- 3107
Query 2357 TATTTCGTTGGTTTAGGTTTAATTTCGGTTCAATTGGTTTAC-TTTGTAATGTTAAGGAG 2415
| ||| || ||| | || || |||| |||||||||||| ||| ||||||||||| |
Sbjct 3108 T-TTT--TTAATTTCG-TTGG-TT-CGGTGCAATTGGTTTACCTTT-TAATGTTAAGG-G 3159
Query 2416 GGGATGCATTCTCAAACGAATCACTTGTTGTCGTTGTCTATTTTAACCGGAATAAACCGC 2475
|| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3160 GG-AGGCATTTTCAAACGAATCACTTGTTGTCGTTGTCTATTTTAACCGGAATAAACCGC 3218
Query 2476 CATTCGACCAGC 2487
| ||||||||||
Sbjct 3219 CTTTCGACCAGC 3230
Score = 1210 bits (655), Expect = 0.0
Identities = 765/815 (94%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 25 TTTTTCTATAATAATTCttttgttttgtttttttCTTGTTCATCTCCTTTCTCTTTCAAT 84
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCCTTTAATAATTCTTTTGTTTTGTTTTTTTCTTGTTCATCTCCTTTCTCTTTCAAT 60
Query 85 TACCGTTGGAACAAGACGAAGTTTCAGAGACAACACTACCCAATCTCTCTCTCT----AA 140
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 61 TACCGTTGGAACAAGACGAAGTTTCAGAGACAACACTACTCAATCTCTCTCTCTCTCTAA 120
Query 141 CCTTAAGTGTTGTCTTTCTCTCTATAAGCCAGAGACCAGACAGTGATGACGATATAGTAT 200
||| || |||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 121 CCTCAA-TGTTGTCTTTCTCTCTATAAGCCAGA--CCAGACAGTGATGACGATGTTGTAA 177
Query 201 ATGAGACCAGAGGGAGGATTAACCACCATTTCCCGTCATGAATCCAGCTACTGACCCAGT 260
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 178 ATGAGACCAGAGGGAGGATTAGCCACCATTTCCCGTCATGAATCCAGCTACAGACCCAGT 237
Query 261 CTCCGCCGCCGCAGCTGCTCTTGCTCCGCCTCCACAACCTCCGCAGCCTCACCGTCTCTC 320
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCTGCCGCCGCAGCTGCTCTAGCTCCGCCTCCACAACCTCCGCAGCCTCACCGTCTCTC 297
Query 321 TACCTCTTGCAACCGTCACCCAGAAGAGCGGTTCACCGGTTTTTGCCCTTCTTGTCTCTG 380
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TACCTCTTGTGACCGTCACCCAGAAGAGCGGTTCACCGGTTTTTGCCCTTCTTGTCTCTG 357
Query 381 TGAACGTCTCTCAGTCTTAGATCAGACCAACAATGGCGGT---TC--CT-CTTCTTCCTC 434
|||||||||||||||||||||||||| ||||||||||||| || || ||||||||||
Sbjct 358 TGAACGTCTCTCAGTCTTAGATCAGAACAACAATGGCGGTGCCTCTTCTTCTTCTTCCTC 417
Query 435 TAAAAAGCCTCCGACCATCTCTGCTGCGGCTCTCAAGGCTCTCTTTAAGCCTTCCGGAAA 494
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 TAAAAAACCTCCGACCATCTCTGCTGCGGCTCTCAAGGCTCTCTTTAAGCCTTCTGGAAA 477
Query 495 CAACGGAGTG-GGCGGTGTAAATA-CAAACGGAAACGGCCGGGTTAAACCCGGATTCTTC 552
|||||||| | ||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 478 CAACGGAG-GAGGCGGTGGAAACAACAA-CGGAAACGGCCGGGTTAAACCCGGATTCTTC 535
Query 553 CCGGAGCTCCGTCGTACGAAATCTTTCTCAGCATCCAAGAACAACGAAGGATTCTCCGGC 612
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 536 CCGGAGCTTCGTCGGACGAAATCTTTCTCAGCGTCTAAGAACAACGAAGGATTCTCCGGC 595
Query 613 GTGTTTGAGCCACAACGTAGGTCTTGTGACGTCAGGCTTCGAAGCTCTCTTTGGAACTTG 672
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 596 GTGTTTGAGCCACAACGTAGGTCTTGTGACGTCAGACTTCGAAGCTCTCTGTGGAACTTG 655
Query 673 TTTAGCCAAGATGAGCAACGAAACCTTCCAAGCAATGTCACCGGCGGTGAGATTGATGTC 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 656 TTTAGCCAAGATGAGCAACGAAACCTTCCAAGCAATGTCACCGGCGGTGAGATTGAGGTG 715
Query 733 GAGCCGAGGAAATCAAGCGTTGCGGAGCCTGTTCTAGAGGTAAACGATGAAGGAGAAGCT 792
|||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 716 GAGCCGAGGAAATCTAGCGTTGCGGAGCCTGTTTTAGAGGTTAACGACGAAGGAGAAGCT 775
Query 793 GAAAGTGACGACGAAGAACTTGAAGAGGAGGAGGA 827
|||||||||||||||| ||||||||||||||||
Sbjct 776 GAAAGTGACGACGAAG---TTGAAGAGGAGGAGGA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93740092945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5