BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09080.1
Length=3081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478218 jgi|Araly1|478218|fgenesh2_kg.3__919__AT3G09080.1 3727 0.0
> Ahg478218 jgi|Araly1|478218|fgenesh2_kg.3__919__AT3G09080.1
Length=3033
Score = 3727 bits (2018), Expect = 0.0
Identities = 2378/2549 (93%), Gaps = 36/2549 (1%)
Strand=Plus/Plus
Query 557 AGGTTCAAAAATGTTTTGCTCTATCTGCATCCAGTCGATTGATAGCCTGCGCTTGCAGCA 616
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 497 AGGTTGAAAAATGTTTTGCTCTATCTGCATCCAGTGGATTGATAGCCTGCGCTTGCAGCA 556
Query 617 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATCCAGTTTT 676
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 557 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATACAATTTT 616
Query 677 CAGATGCTAAAAGCAGCAACACTGAAAATCTGTCTCAATCACCAGAACCCAAAAATATAG 736
|||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| ||
Sbjct 617 CAGATGCTAAAAGCAGCAACACTGAAAATCAGTCTCATTCAGCAGAACTCAAAAATACAG 676
Query 737 AATCTTCGCCTGGTATCTTCCCGGACGCAGTTGCTTGTCAGTTTTCTACCACAGATAAGC 796
||||| |||||| ||| || ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 677 AATCTCCGCCTGTTATTTTTCCGGACGCAGTTGCTTGCCAGTTTTCTACCAAAGATAAGC 736
Query 797 TCGTTGTCATCTATGGGAATCGTAGTCTCTATGTTTGGGATGTGGATGATGTGAACAAGC 856
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 737 TCGTTGTCATCTATGGGGATCGTAGTCTCTATGTTTGGGATGTGAACGATGTGAACAAGC 796
Query 857 CTACTAGGTGCTCCATGATGATATCACACTCTGCCGGAATTTGGGATATCAAAAACCTCT 916
||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 797 CTACTAGGTTCTCGATGATGATATCACATTCTGCCGGAATTCGGGATATCAAAAACCTCT 856
Query 917 CTTGTGGAAATATGCACAGTCCAACAGCTGCATGTGTAGCCAGGGGATGCAGTGAAGGGG 976
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 857 CTTGTGGAAATTTGCACAGTCCAACAGCTGCATGTGTAGCTAGGGGATGCAGTGAAGGGG 916
Query 977 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTCCAAG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 917 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTTGAAG 976
Query 1037 TGAATCCGTTAGAAGCCAATGCAAGCAGCAATCCCTCAGAATCTTCAACACAGGGGATTA 1096
|| ||| || |||||| |||||||| ||||||||||||||||| ||||| |||||||
Sbjct 977 TGGGTCC---AGCAGCCAACGCAAGCAGTAATCCCTCAGAATCTTCCACACAAGGGATTA 1033
Query 1097 TGCATTTAGCTAGCGCTGGCATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1156
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGCATTTAGCTAGCGCTGGAATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1093
Query 1157 TTGGGTTT-CGGGCACTGGCT-GTAAGTGAAGATGGAAAGTACTTAGCAGCTGGTGACTG 1214
|| ||||| || ||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 1094 TT-GGTTTCCGAGCACTGG-TAGTAAGTGAAGATGGAAAGTACTTAGCAGCTGGGGACTG 1151
Query 1215 TGGAGGGAACCTTCATATATATGATCTGCAAGAATCAGAATATACATGCTTTATGGATGC 1274
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1152 TGGAGGGAACCTTCATATATATGACCTACAAGAATCAGAATATACATGCTTTACGGATGC 1211
Query 1275 TCATGAAGCAGAAATTCAGTCATTGAGCTTTAGCTTTCCTGTACTGACAA-ACGTTGATT 1333
|||||||||||||||||||||||||||||| |||| ||||| ||||| || |||||||||
Sbjct 1212 TCATGAAGCAGAAATTCAGTCATTGAGCTTCAGCTCTCCTGGACTGA-AAGACGTTGATT 1270
Query 1334 CTGAAAATGCCTC-A--A--G----CTTGCTTGCTTCTGGTGGAAAGGGCCGCGCAATTC 1384
||||||||||||| | | | |||||||| ||||||||| |||||||| || || |
Sbjct 1271 CTGAAAATGCCTCAAGCAGCGATTTCTTGCTTGTTTCTGGTGGGAAGGGCCGAGCGATCC 1330
Query 1385 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGGAGTGTTTGTGGTTCAGCTGCTG 1444
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1331 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGAAGTGTTTGTGGTTCAGCTGCTG 1390
Query 1445 TAACTTCTGTTAAATTCGCATGCAATGGCCGGAAAATGTTAACTTCTGGTGCAGATAGGT 1504
|||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1391 TAACTTCTGTTAAATTTGCATGTAATGGCCAGAAAATGTTAACTTCTGGTGCAGATAGGT 1450
Query 1505 TGCAGATGTTTGACGTTAACAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATACTC 1564
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1451 TGCAGCTGTTTGACGTTGTCAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATCCTA 1510
Query 1565 AAACTCTCTCTCATGGAACGATCTATGATGTGGCTGTAGATCCAACATCAGGACTTGTTG 1624
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1511 AAACTCTCTCTCATGGAACCATCTATGATGTGGTTGTAGATCCAACATCAGGACTTGTTG 1570
Query 1625 TCACAGTGGGACAGGATAAGAAGATAAACATATTTGACATAGAAAGTGGAAAGCTTGTCA 1684
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1571 TCACAGTGGGACAGGATAAGAAGATAAACATATTCGACATAGGCAGTGGAAAGCTTGTTA 1630
Query 1685 GATCATTCAAGCAAGACCGAGACCATGGAGATCCCGTAAAGGTCATTTTGGACCCAAGCT 1744
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1631 GATCATTCAAGCAAGACAGAGACCATGGAGATCCCTTAAAGGTCATTTTGGACCCAAGCT 1690
Query 1745 GCAACTACTTGGTATGCTCCTACTCTAACAGGACAATTTGCTTTGTGGACTTT-GTCACC 1803
|| |||||| |||||||||||||||||||||||||| |||||||| || ||| ||||||
Sbjct 1691 ACAGCTACTTAGTATGCTCCTACTCTAACAGGACAATCTGCTTTGTCGA-TTTCGTCACC 1749
Query 1804 GGAGAGCTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1863
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GGAGAGTTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1809
Query 1864 CCTGATTGCAAACATATCATATCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1923
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1810 CCTGATTGCAAACATATCATTTCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1869
Query 1924 CCTTTGCGAATGGCTACTCGTATTATACGGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1983
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1870 CCTCTGCGAATGGCTACTCGTATTATACAGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1929
Query 1984 GCCCAACTGGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAATGAT 2043
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1930 GCCCAACTTGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAAAGAT 1989
Query 2044 GCATCATGTTCTGCAAACTATAAGCCAGTAGAGGAGAACGCAGATCAGATGCAGCA--A- 2100
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1990 GCATCATGTTCTGCAAACTATAAGCCAGTAGAAGAGAACGCAGATCAGATGCAGCAGCAA 2049
Query 2101 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGGCTTCCTAAATGGGCTCAA 2160
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2050 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGACTTCCTAAGTGGGCTCAA 2109
Query 2161 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAAGATTCCATTTCAAACCAGAAA 2220
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2110 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAGGATTCCATTTCAAACCAGAAA 2169
Query 2221 CATGAAGATAAAAGTATGGCAAATACTATTG---ACAATGCTGAAGAATGCTCTTCTGTG 2277
||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||
Sbjct 2170 CATGAAGATAAAAGTCTGGCAAATACTGTTGTTGACTGTGCTGAAGAATGCTCTTCTGTA 2229
Query 2278 AATCTTGAATACCAAACTCCCAAGCAAGGTTCAAGAA-CCGAAAATGCATGCCTTGGAAG 2336
|||||||| | |||||||||||| |||||||||| || |||||||| |||||||||||||
Sbjct 2230 AATCTTGATTGCCAAACTCCCAAACAAGGTTCAA-AAGCCGAAAATTCATGCCTTGGAAG 2288
Query 2337 CCTGTCCAAAAGCTCCAACGATACTGAAACTTCAGGGCTTCAAGGAGATGATCCTAGCAA 2396
|| ||||||||||||| ||||||||||||||||| |||||| |||||||||||||| |
Sbjct 2289 TCTTTCCAAAAGCTCCAGCGATACTGAAACTTCAGTCCTTCAAAGAGATGATCCTAGCCA 2348
Query 2397 TAGGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATAC 2456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2349 CAAGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATTC 2408
Query 2457 TCCAAACATCCAAGCATCTTTCATTAAACAACAGAAACCTGAAAATTTCTGCACCAAACA 2516
|||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2409 TCCAAACATCCAAGCACCTTTCATTATACAACAGAAACCTGAGAATTTCTGCACCAAACA 2468
Query 2517 TTCTGCCGGGCA-GGGGGACATGTTCAAACAGTTTGATAACAGTTTGTCAATAATAGACA 2575
|||||||||||| ||||| |||| |||| ||||||||||||||||||||||| ||||||
Sbjct 2469 TTCTGCCGGGCATGGGGG-CATGCTCAAGCAGTTTGATAACAGTTTGTCAATGATAGACG 2527
Query 2576 ATGTCGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCGTCTCAGTTTGTCCTAAGAA 2635
| || ||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 2528 AGGTTGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCTTCCCAGTTTTTCCTAAGAA 2587
Query 2636 GAGACTACATTGGCGGAA-CTAAACAATTTACGCGTACACCCTCCCAAAAATCAGGGTAC 2694
|||||||||| ||||||| | |||||||||| |||||| |||||||| ||||||||||||
Sbjct 2588 GAGACTACATCGGCGGAAGC-AAACAATTTATGCGTACGCCCTCCCAGAAATCAGGGTAC 2646
Query 2695 AAGACTTTGAGGTCGATCCAAGAACATATCCCTCTTGATACGGTGAATGATCAATCTTCA 2754
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 2647 AAGACTTTGAGGTCGATCCAAGAACATCTCCCTCTTGATACGGTGAAAGATCAATCTTCA 2706
Query 2755 CATAGTTCAGAAGAACATCCTGAGCAGGACAAGACGTCTTCAGAAGTATTCCACGATACA 2814
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2707 CATAGTTCAGAAGAACATCCTGAACAGGACAAGACGTCTTCAGAAGTATTCCATGATACA 2766
Query 2815 CTTGCAGACGAGTCACTTCAAGAAAGGATAACTTCTTGCCGTCAAGCGTTACACGGTTTA 2874
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2767 CTTGCAGACGATTCACTTCAAGAAAGGATAACTTCCTGCCGTCAAGCATTACACGGTTTA 2826
Query 2875 AACACTGCTGCTGCGGTTTTCGTCCAGTCAATATCGGAATTATCTACAGCTTCTCCTCGG 2934
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2827 AACGCTGCTGCTGCGGTTTTCGTCCAGTCAATGTCGGAATTATCTACAGCTTCTCCCCGA 2886
Query 2935 GATCAAATCTCAGGTGAACTTAGAGCTCAGTTGTTTGATGAAGCAGCTTTAATGATTCCA 2994
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 2887 GATCAAATCTCAGGTGAACTTAGAGATCAGTTGTTTGATGAAGCAGCTCTGATGATTCCA 2946
Query 2995 GA-TGTGTCTCATAAAGTTAGCGAAATTGTTGCCAAGATAATGCTTGAGCACAAAAATAG 3053
| | ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||
Sbjct 2947 AAAT-TGTCTCATAAAGTTAATGAAGTTGTTGCCAAGATAATGCCTGCGCACAAAAATAG 3005
Query 3054 AA-CTAGTGATAGAATGTTGTCCAATTAG 3081
|| | |||||||||||||| |||||||||
Sbjct 3006 AAAC-AGTGATAGAATGTTCTCCAATTAG 3033
Score = 654 bits (354), Expect = 0.0
Identities = 411/439 (94%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTGAGCCAGAAATTAAAGAAGCCTAGCTCATCCACGAAGCTAATTCTACAAGAG 60
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGAAGCTAAGCCAGAAATTAAAGAAGCCTAGTTCATCCACCAAGCTAATTCTACAAGAG 60
Query 61 ATCATCGGTTTGACGACGAA-GAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCATCGGTTTGACGAC-AACAAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119
Query 120 ATGTGTTTACTTAGCGGGATGTGTTGTGGTAGTCTACGATGTAGATTCGTGCACTCAGTC 179
|||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||| ||
Sbjct 120 ATGTGTTTACTTGGCGGGATGTGTTGTGGTAGTCTACGATGTAGGTTCTTTCACTCAATC 179
Query 180 ACATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTGGCGATTTCGCAGAA 239
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 180 GCATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTTGCGGTTTCGCAGAA 239
Query 240 TGGGAGATTTGTTGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTAGCATT 299
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TGGGCGATTTGTAGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTGGCATT 299
Query 300 TCATGGAAATCAAACTGATGATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTTATATC 359
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 300 TCATGGAAAGCAAACTGATAATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTGGTATC 359
Query 360 AGCCAACAGAGTGAACTCTAGTGGAAGTGACGAACAAATTGACGAAGTTATCTCAATATA 419
| ||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 360 AATCAATAGAGTGAACTCTAGTGGAATTGACGAACAAAGTGACGAATTTATCTCAATATA 419
Query 420 CGCTCTAACAGAAGCAGGT 438
|||||| ||||||||||||
Sbjct 420 CGCTCTCACAGAAGCAGGT 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116365698475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5