BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09080.1 Length=3081 Score E Sequences producing significant alignments: (Bits) Value Ahg478218 jgi|Araly1|478218|fgenesh2_kg.3__919__AT3G09080.1 3727 0.0 > Ahg478218 jgi|Araly1|478218|fgenesh2_kg.3__919__AT3G09080.1 Length=3033 Score = 3727 bits (2018), Expect = 0.0 Identities = 2378/2549 (93%), Gaps = 36/2549 (1%) Strand=Plus/Plus Query 557 AGGTTCAAAAATGTTTTGCTCTATCTGCATCCAGTCGATTGATAGCCTGCGCTTGCAGCA 616 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 497 AGGTTGAAAAATGTTTTGCTCTATCTGCATCCAGTGGATTGATAGCCTGCGCTTGCAGCA 556 Query 617 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATCCAGTTTT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 557 AGGGAATGGTCCAGCTATTTACGCCTGAAACTTTAGATTATGCTGGCACAATACAATTTT 616 Query 677 CAGATGCTAAAAGCAGCAACACTGAAAATCTGTCTCAATCACCAGAACCCAAAAATATAG 736 |||||||||||||||||||||||||||||| |||||| ||| |||||| |||||||| || Sbjct 617 CAGATGCTAAAAGCAGCAACACTGAAAATCAGTCTCATTCAGCAGAACTCAAAAATACAG 676 Query 737 AATCTTCGCCTGGTATCTTCCCGGACGCAGTTGCTTGTCAGTTTTCTACCACAGATAAGC 796 ||||| |||||| ||| || ||||||||||||||||| ||||||||||||| |||||||| Sbjct 677 AATCTCCGCCTGTTATTTTTCCGGACGCAGTTGCTTGCCAGTTTTCTACCAAAGATAAGC 736 Query 797 TCGTTGTCATCTATGGGAATCGTAGTCTCTATGTTTGGGATGTGGATGATGTGAACAAGC 856 ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| Sbjct 737 TCGTTGTCATCTATGGGGATCGTAGTCTCTATGTTTGGGATGTGAACGATGTGAACAAGC 796 Query 857 CTACTAGGTGCTCCATGATGATATCACACTCTGCCGGAATTTGGGATATCAAAAACCTCT 916 ||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 797 CTACTAGGTTCTCGATGATGATATCACATTCTGCCGGAATTCGGGATATCAAAAACCTCT 856 Query 917 CTTGTGGAAATATGCACAGTCCAACAGCTGCATGTGTAGCCAGGGGATGCAGTGAAGGGG 976 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 857 CTTGTGGAAATTTGCACAGTCCAACAGCTGCATGTGTAGCTAGGGGATGCAGTGAAGGGG 916 Query 977 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTCCAAG 1036 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 917 TTTCCTTCACTACATGTTCTGAAGATGGAACCATCAGGTTGTGGGATCTTGCTTTTGAAG 976 Query 1037 TGAATCCGTTAGAAGCCAATGCAAGCAGCAATCCCTCAGAATCTTCAACACAGGGGATTA 1096 || ||| || |||||| |||||||| ||||||||||||||||| ||||| ||||||| Sbjct 977 TGGGTCC---AGCAGCCAACGCAAGCAGTAATCCCTCAGAATCTTCCACACAAGGGATTA 1033 Query 1097 TGCATTTAGCTAGCGCTGGCATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1156 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1034 TGCATTTAGCTAGCGCTGGAATTTTTGAACGTGATCTCGTTGAGACATGTGGTAGCAAAT 1093 Query 1157 TTGGGTTT-CGGGCACTGGCT-GTAAGTGAAGATGGAAAGTACTTAGCAGCTGGTGACTG 1214 || ||||| || ||||||| | |||||||||||||||||||||||||||||||| ||||| Sbjct 1094 TT-GGTTTCCGAGCACTGG-TAGTAAGTGAAGATGGAAAGTACTTAGCAGCTGGGGACTG 1151 Query 1215 TGGAGGGAACCTTCATATATATGATCTGCAAGAATCAGAATATACATGCTTTATGGATGC 1274 |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| Sbjct 1152 TGGAGGGAACCTTCATATATATGACCTACAAGAATCAGAATATACATGCTTTACGGATGC 1211 Query 1275 TCATGAAGCAGAAATTCAGTCATTGAGCTTTAGCTTTCCTGTACTGACAA-ACGTTGATT 1333 |||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||| Sbjct 1212 TCATGAAGCAGAAATTCAGTCATTGAGCTTCAGCTCTCCTGGACTGA-AAGACGTTGATT 1270 Query 1334 CTGAAAATGCCTC-A--A--G----CTTGCTTGCTTCTGGTGGAAAGGGCCGCGCAATTC 1384 ||||||||||||| | | | |||||||| ||||||||| |||||||| || || | Sbjct 1271 CTGAAAATGCCTCAAGCAGCGATTTCTTGCTTGTTTCTGGTGGGAAGGGCCGAGCGATCC 1330 Query 1385 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGGAGTGTTTGTGGTTCAGCTGCTG 1444 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1331 ACATTTATGATGTCAAAAGGAACTTTGATCCCGTTGGAAGTGTTTGTGGTTCAGCTGCTG 1390 Query 1445 TAACTTCTGTTAAATTCGCATGCAATGGCCGGAAAATGTTAACTTCTGGTGCAGATAGGT 1504 |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1391 TAACTTCTGTTAAATTTGCATGTAATGGCCAGAAAATGTTAACTTCTGGTGCAGATAGGT 1450 Query 1505 TGCAGATGTTTGACGTTAACAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATACTC 1564 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 1451 TGCAGCTGTTTGACGTTGTCAGAAAAGCAAGTAGTGTGCGTCTTTCACCTTCTCATCCTA 1510 Query 1565 AAACTCTCTCTCATGGAACGATCTATGATGTGGCTGTAGATCCAACATCAGGACTTGTTG 1624 ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1511 AAACTCTCTCTCATGGAACCATCTATGATGTGGTTGTAGATCCAACATCAGGACTTGTTG 1570 Query 1625 TCACAGTGGGACAGGATAAGAAGATAAACATATTTGACATAGAAAGTGGAAAGCTTGTCA 1684 |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | Sbjct 1571 TCACAGTGGGACAGGATAAGAAGATAAACATATTCGACATAGGCAGTGGAAAGCTTGTTA 1630 Query 1685 GATCATTCAAGCAAGACCGAGACCATGGAGATCCCGTAAAGGTCATTTTGGACCCAAGCT 1744 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1631 GATCATTCAAGCAAGACAGAGACCATGGAGATCCCTTAAAGGTCATTTTGGACCCAAGCT 1690 Query 1745 GCAACTACTTGGTATGCTCCTACTCTAACAGGACAATTTGCTTTGTGGACTTT-GTCACC 1803 || |||||| |||||||||||||||||||||||||| |||||||| || ||| |||||| Sbjct 1691 ACAGCTACTTAGTATGCTCCTACTCTAACAGGACAATCTGCTTTGTCGA-TTTCGTCACC 1749 Query 1804 GGAGAGCTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1863 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 GGAGAGTTGGTTGCTCAGGCCACAGGACATGGTGAAGCTGTGACTGGTGTTATTTTCCTA 1809 Query 1864 CCTGATTGCAAACATATCATATCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1923 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1810 CCTGATTGCAAACATATCATTTCAGTTGCAAGTGACGGCTGTATTTTTGTCTGGAAACTT 1869 Query 1924 CCTTTGCGAATGGCTACTCGTATTATACGGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1983 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1870 CCTCTGCGAATGGCTACTCGTATTATACAGGCAGTAAATGAAAATGGCAGGTTAACTGTG 1929 Query 1984 GCCCAACTGGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAATGAT 2043 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1930 GCCCAACTTGAAAAGTTCAAGCAAATTGCGGTTGATTTGGAGGAAGACAATCCAAAAGAT 1989 Query 2044 GCATCATGTTCTGCAAACTATAAGCCAGTAGAGGAGAACGCAGATCAGATGCAGCA--A- 2100 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1990 GCATCATGTTCTGCAAACTATAAGCCAGTAGAAGAGAACGCAGATCAGATGCAGCAGCAA 2049 Query 2101 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGGCTTCCTAAATGGGCTCAA 2160 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 2050 CGCTCCCCATGGACATCCTCATTTAAGTTCAGCGTTTCTCGACTTCCTAAGTGGGCTCAA 2109 Query 2161 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAAGATTCCATTTCAAACCAGAAA 2220 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2110 GCTAAAGTGGAAACATCTGATATTGCTACCAATTGTCAGGATTCCATTTCAAACCAGAAA 2169 Query 2221 CATGAAGATAAAAGTATGGCAAATACTATTG---ACAATGCTGAAGAATGCTCTTCTGTG 2277 ||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||| Sbjct 2170 CATGAAGATAAAAGTCTGGCAAATACTGTTGTTGACTGTGCTGAAGAATGCTCTTCTGTA 2229 Query 2278 AATCTTGAATACCAAACTCCCAAGCAAGGTTCAAGAA-CCGAAAATGCATGCCTTGGAAG 2336 |||||||| | |||||||||||| |||||||||| || |||||||| ||||||||||||| Sbjct 2230 AATCTTGATTGCCAAACTCCCAAACAAGGTTCAA-AAGCCGAAAATTCATGCCTTGGAAG 2288 Query 2337 CCTGTCCAAAAGCTCCAACGATACTGAAACTTCAGGGCTTCAAGGAGATGATCCTAGCAA 2396 || ||||||||||||| ||||||||||||||||| |||||| |||||||||||||| | Sbjct 2289 TCTTTCCAAAAGCTCCAGCGATACTGAAACTTCAGTCCTTCAAAGAGATGATCCTAGCCA 2348 Query 2397 TAGGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATAC 2456 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2349 CAAGAAAGAAAAAACCCGTTGGAACACTATCTACAACGTGTGTTTGGATCTTCTAAATTC 2408 Query 2457 TCCAAACATCCAAGCATCTTTCATTAAACAACAGAAACCTGAAAATTTCTGCACCAAACA 2516 |||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 2409 TCCAAACATCCAAGCACCTTTCATTATACAACAGAAACCTGAGAATTTCTGCACCAAACA 2468 Query 2517 TTCTGCCGGGCA-GGGGGACATGTTCAAACAGTTTGATAACAGTTTGTCAATAATAGACA 2575 |||||||||||| ||||| |||| |||| ||||||||||||||||||||||| |||||| Sbjct 2469 TTCTGCCGGGCATGGGGG-CATGCTCAAGCAGTTTGATAACAGTTTGTCAATGATAGACG 2527 Query 2576 ATGTCGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCGTCTCAGTTTGTCCTAAGAA 2635 | || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| Sbjct 2528 AGGTTGAGGCCGAAAAATCATCGCAGCAAAGAAGATATTCTTCCCAGTTTTTCCTAAGAA 2587 Query 2636 GAGACTACATTGGCGGAA-CTAAACAATTTACGCGTACACCCTCCCAAAAATCAGGGTAC 2694 |||||||||| ||||||| | |||||||||| |||||| |||||||| |||||||||||| Sbjct 2588 GAGACTACATCGGCGGAAGC-AAACAATTTATGCGTACGCCCTCCCAGAAATCAGGGTAC 2646 Query 2695 AAGACTTTGAGGTCGATCCAAGAACATATCCCTCTTGATACGGTGAATGATCAATCTTCA 2754 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 2647 AAGACTTTGAGGTCGATCCAAGAACATCTCCCTCTTGATACGGTGAAAGATCAATCTTCA 2706 Query 2755 CATAGTTCAGAAGAACATCCTGAGCAGGACAAGACGTCTTCAGAAGTATTCCACGATACA 2814 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2707 CATAGTTCAGAAGAACATCCTGAACAGGACAAGACGTCTTCAGAAGTATTCCATGATACA 2766 Query 2815 CTTGCAGACGAGTCACTTCAAGAAAGGATAACTTCTTGCCGTCAAGCGTTACACGGTTTA 2874 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 2767 CTTGCAGACGATTCACTTCAAGAAAGGATAACTTCCTGCCGTCAAGCATTACACGGTTTA 2826 Query 2875 AACACTGCTGCTGCGGTTTTCGTCCAGTCAATATCGGAATTATCTACAGCTTCTCCTCGG 2934 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 2827 AACGCTGCTGCTGCGGTTTTCGTCCAGTCAATGTCGGAATTATCTACAGCTTCTCCCCGA 2886 Query 2935 GATCAAATCTCAGGTGAACTTAGAGCTCAGTTGTTTGATGAAGCAGCTTTAATGATTCCA 2994 ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| Sbjct 2887 GATCAAATCTCAGGTGAACTTAGAGATCAGTTGTTTGATGAAGCAGCTCTGATGATTCCA 2946 Query 2995 GA-TGTGTCTCATAAAGTTAGCGAAATTGTTGCCAAGATAATGCTTGAGCACAAAAATAG 3053 | | ||||||||||||||| ||| |||||||||||||||||| || |||||||||||| Sbjct 2947 AAAT-TGTCTCATAAAGTTAATGAAGTTGTTGCCAAGATAATGCCTGCGCACAAAAATAG 3005 Query 3054 AA-CTAGTGATAGAATGTTGTCCAATTAG 3081 || | |||||||||||||| ||||||||| Sbjct 3006 AAAC-AGTGATAGAATGTTCTCCAATTAG 3033 Score = 654 bits (354), Expect = 0.0 Identities = 411/439 (94%), Gaps = 2/439 (0%) Strand=Plus/Plus Query 1 ATGAAGCTGAGCCAGAAATTAAAGAAGCCTAGCTCATCCACGAAGCTAATTCTACAAGAG 60 |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1 ATGAAGCTAAGCCAGAAATTAAAGAAGCCTAGTTCATCCACCAAGCTAATTCTACAAGAG 60 Query 61 ATCATCGGTTTGACGACGAA-GAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119 ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 61 ATCATCGGTTTGACGAC-AACAAACGCCAATGGATTGGCATCAGTTACTTGCAGCTCGAA 119 Query 120 ATGTGTTTACTTAGCGGGATGTGTTGTGGTAGTCTACGATGTAGATTCGTGCACTCAGTC 179 |||||||||||| ||||||||||||||||||||||||||||||| ||| | |||||| || Sbjct 120 ATGTGTTTACTTGGCGGGATGTGTTGTGGTAGTCTACGATGTAGGTTCTTTCACTCAATC 179 Query 180 ACATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTGGCGATTTCGCAGAA 239 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 180 GCATCTTGTTGTATCTCATCGTATGCCTAAGCCTTTGAGCTGTGTTGCGGTTTCGCAGAA 239 Query 240 TGGGAGATTTGTTGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTAGCATT 299 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 TGGGCGATTTGTAGCTGCTGGAGAGAGGACACGTTCAAGTAAAGTAGGATCTTTGGCATT 299 Query 300 TCATGGAAATCAAACTGATGATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTTATATC 359 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 300 TCATGGAAAGCAAACTGATAATGGTTTTCAAAAAGGAAACTCGTTTGTGTCAGTGGTATC 359 Query 360 AGCCAACAGAGTGAACTCTAGTGGAAGTGACGAACAAATTGACGAAGTTATCTCAATATA 419 | ||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct 360 AATCAATAGAGTGAACTCTAGTGGAATTGACGAACAAAGTGACGAATTTATCTCAATATA 419 Query 420 CGCTCTAACAGAAGCAGGT 438 |||||| |||||||||||| Sbjct 420 CGCTCTCACAGAAGCAGGT 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116365698475 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5