BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09085.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478219 jgi|Araly1|478219|fgenesh2_kg.3__920__AT3G09085.1 695 0.0
> Ahg478219 jgi|Araly1|478219|fgenesh2_kg.3__920__AT3G09085.1
Length=550
Score = 695 bits (376), Expect = 0.0
Identities = 514/575 (89%), Gaps = 31/575 (5%)
Strand=Plus/Plus
Query 7 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAAGCTCGAGATCAATATCGAA 66
||||||||||||||||||||||||||||||||||||||||| | | || | |||
Sbjct 1 CTTCTAAATCTCTCGCTTTCACCAACCAAACCCAGAAGAAA---C-A-AT--A-ATC--- 49
Query 67 TAAGGATCACAAAATTAGGGTTTTAATTTGATAGAGAAGATGAATTTCAGAAGCTTTGAG 126
| | |||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 50 ----G---A-AAAA-TAGGGTTTTAATTTGAGAGAGAAGATGAATTTTAGAAGCTTTGAG 100
Query 127 GAGTTCTGGCCTTTCTACATGATGCAACACTCGAATCCATCGACGCGAAGGTTGCACTTC 186
|||||||||||||||||| ||||||||||||||||||| | ||| || ||| |||||||
Sbjct 101 GAGTTCTGGCCTTTCTACGTGATGCAACACTCGAATCCGTTAACGAGACGGTGGCACTTC 160
Query 187 ATAGGTATCATCGCGAGCATCGTTGCTTTGATATGTTCGATTTTGATCAACTGGTGGTTC 246
|||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct 161 ATAGGTATAATCGCGAGCATCGTGGCTTTGCTGTGTTCGATTTTGATCAACTGGTGGTTC 220
Query 247 -TTAGCTCTGGTGCCTCTGCTTGGGTACGGATTCGCGTGGTATAGCCACTTCTTCGTGGA 305
|| |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 221 GTT-GCTCTGGTGCCTCTCCTTGGGTACGGGTTCGCGTGGTTTAGCCACTTCTTCGTGGA 279
Query 306 AGGGAATGTTCCGGCGAGCTTTGGGCATCCGCTTTGGTCGTTTCTCTGCGATCTCAAGAT 365
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 280 AGGGAATGTTCCGGCAAGCTTCGGGCATCCCCTTTGGTCGTTTCTCTGCGATCTCAAGAT 339
Query 366 GTTTAGTCTGATGCTCACAGGAAGCATGGAGAGAGAGATGAAGAGACTTGGTAAGAGGCC 425
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 340 GTTTAGTCTGATGCTTACAGGAAGCATGGAGAGAGAGATGAAGAGACTCGGTAAGAGGCC 399
Query 426 ATTGTTGCAGCTCTCTTGAAGCAGCAGCAGATATCTCTATAGAATTGTTCTTGATTCTTC 485
|||| |||| |||||||||||||| || | | |||| |||||||||||||||||||||||
Sbjct 400 ATTGCTGCAACTCTCTTGAAGCAGAAG-A-A-ATCTTTATAGAATTGTTCTTGATTCTTC 456
Query 486 TTATTGCGTTCTGCGATTGGATTTTAGACTCCAG-TTTGTAATTACTTCATGGAATCGTT 544
| |||||||||||||||||||||| |||||| || ||||||||||||| ||||||||| |
Sbjct 457 TCATTGCGTTCTGCGATTGGATTT-AGACTCGAGATTTGTAATTACTTAATGGAATCGCT 515
Query 545 GTTTGCGAATGATC-AT--TTC-TTCAAATTCAAA 575
|||||||| ||||| || ||| ||||||||||||
Sbjct 516 GTTTGCGACTGATCGATCATTCCTTCAAATTCAAA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5