BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09100.2
Length=2781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478222 jgi|Araly1|478222|fgenesh2_kg.3__923__AT3G09100.2 3969 0.0
Ahg939541 jgi|Araly1|939541|scaffold_600085.1 1421 0.0
> Ahg478222 jgi|Araly1|478222|fgenesh2_kg.3__923__AT3G09100.2
Length=2615
Score = 3969 bits (2149), Expect = 0.0
Identities = 2479/2634 (94%), Gaps = 39/2634 (1%)
Strand=Plus/Plus
Query 124 GGTGGATTTCGTAGGCATCTACGGAGCTTACTTGTTTCAAAGAACCTTGGATGTTGTTTC 183
||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 GGTTGATTTCGTAGACATCGACGGAGCTTTCTTGTTTCAAAGAA-TTTGGATGTTGTTTC 59
Query 184 CGATTCTCCGAAAGCTCTGTGTTCTTTAGTTTGATACCTCAGATATTGGATGCCCTTGAT 243
|||||| |||||||||||||||||||||| ||| | | | ||||| | || | || |
Sbjct 60 CGATTCGCCGAAAGCTCTGTGTTCTTTAG-TTGGTTGAT-A-ATATT-G-TG-CTTTTCT 113
Query 244 -ATAACTT-AGGTA-G-CTT--CTTACAGAGGAAGGATATGTTAGGTTAATTTCTGTTCA 297
|| ||| || || | ||| |||||||||||| | |||||||||||| | |||||||
Sbjct 114 CATGCCTTCAGATATGACTTAGGTTACAGAGGAAGTAGATGTTAGGTTAA-TGCTGTTCA 172
Query 298 TTTGCCCTTGGATGGTTGCTACGATGGACTTAAATGCTTCACCCCAACCCGAAGAAGATG 357
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TTTGCCCTTGAATGGTCGCTACGATGGACTTAAATGCTTCACCCCAACCCGAAGAAGATG 232
Query 358 ACGAACCGTATGTGAGACATCTAGAAGACTATTCTTCTCGGGATGAACGGATAGAGTCTG 417
||||||| |||||||||||| ||||||| ||| |||||||||||| |||||||||||||
Sbjct 233 ACGAACCCTATGTGAGACATTTAGAAGATTATAATTCTCGGGATGACCGGATAGAGTCTG 292
Query 418 CTGTTGAAATCGCTAGACGGGAACGTGAAGAGAGAAAGAAACGAATGAGATATGACAAGC 477
||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 293 CTGTTGAAATCGCAAGATGGGTACGAGAAGAGAGAAAGAAACGAATGAGATATGACAAGC 352
Query 478 CAACACATAACTCTCAGCCAGTTTTCCGTGATCAATATTACCAGAATCGAAATACTAAAG 537
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 353 CAACACATAACTCGCAGCCAGTTTTCCGTGATCAATATTATCAGAATCGAAATACTAAAG 412
Query 538 CTTATGATAGATACAAGATCCCTCAAGGTTGGCTAGACTGCCCTCCTTCTGGGAATGAGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 413 CTTATGATAGATACAAGATCCCTCAAGGTTGGCTAGACTGCCCTCCTTCTGGGCATGAGA 472
Query 598 TAGGATTCCTCGTTCCTTCAAAAGTTCCCCTGAATGAATCTTACAATAATCATGTACCTC 657
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TAGGATTCCTTGTTCCTTCCAAAGTTCCCCTGAATGAATCTTACAATAATCATGTACCTC 532
Query 658 CTGGAAGTAGATACTCTTTTAAACAGGTGATCCATAACCAGAGGATAGCTGGGAGAAAGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTGGAAGTAGATACTCTTTTAAACAGGTGATCCATAACCAGAGGATAGCTGGGAGAAAGC 592
Query 718 TTGGTCTGGTGATCGATTTGACAAACACAACTCGTTACTATTCTACGACAGACTTGAAGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGGTCTGGTGATCGATTTGACAAACACAACTCGTTACTATTCTACGACAGACTTGAAGA 652
Query 778 AAGAAGGCATTAAGCATGTGAAGATTGCATGCAAGGGTCGTGATGCAGTGCCAGATAATG 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 AAGAAGGCATTAAGCATGTGAAGATTGCATGCAAGGGTCGTGATTCAGTGCCAGATAATG 712
Query 838 TGTCTGTCAACGCATTTGTCAATGAGGTTAATCAGTTTGTCCTAAATCTAAAACACTCGA 897
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 713 TGTCTGTCAATGCGTTTGTCAATGAGGTTAATCAGTTCGTCCTAAATCTAAAACACTCGA 772
Query 898 AAAAGTATATTCTCGTCCATTGTACACATGGACATAATCGGACAGGGTTCATGATAGTTC 957
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 773 AAAAGTATATTCTCGTCCACTGTACACATGGGCATAATCGGACAGGGTTTATGATAGTTC 832
Query 958 ATTATCTCATGCGATCTGGGCCAATGAATGTTACACAGGCTTTGAAAATCTTTTCCGATG 1017
||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||
Sbjct 833 ATTATCTTATGCGATCTTTGCCAATGAATGTTACACAGGCATTGAAAATCTTTTCTGATG 892
Query 1018 CCCGCCCACCTGGGATCTATAAACCAGATTATATTGATGCTTTATACTCGTTTTATCACG 1077
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 893 CCCGACCACCTGGGATCTATAAACCTGATTATATTGATGCTTTATACTCGTTTTATCACG 952
Query 1078 AAATAAAACCTGAAAGCGTCATTTGCCCATCAACTCCTGAATGGAAGAGGTCTACTGAGC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 953 AAATAAAACCTGAAAGCGTCATTTGCCCATCAACTCCTGAATGGAAGAGGTCGACTGAAC 1012
Query 1138 TTGATTTAAATGGTGAAGCTTTGCCAGATGATGAAGATGATGATGGCGGTCCTGCTGGTC 1197
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1013 TTGATTTAAATGGTGAAGCTTTGCCAGATGATGATGATGATGATGGCGGTCCAGCTGGCC 1072
Query 1198 CTGTGCAAGGTTTCCAGGAGGAAAGTCATC-AGGTGGATGTCAAGATGTCAAATGATGAC 1256
|||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1073 CTGTGCAATGTTTTCAGGAGGAAAGTCATCCAG-TGGATGTCAAGATGTCAAATGATGAC 1131
Query 1257 GTTCTAGGTGATGAAATACCCCCAGACCAGGAGGAAGGTTACCGCCAATTCTTTTATAGG 1316
||||||||||||||||| ||||| ||||||||||||||||| || || |||||||||| |
Sbjct 1132 GTTCTAGGTGATGAAATTCCCCCTGACCAGGAGGAAGGTTATCGGCAGTTCTTTTATAAG 1191
Query 1317 ATGCTATCACTGAATATTGGGGGAAGAGGATGTTCACAATTTCCAGGTTCACACCCTGTC 1376
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1192 ATGCTATCACTGAATATTGGGGGAAGAGGATGTTCACAATTTCCCGGTTCACACCCTGTC 1251
Query 1377 TCCTTAAACAGGGAAAATTTGCAACTCTTGAGGCAGCGGTACTATTATGCAACATGGAAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCCTTAAACAGGGAAAATTTGCAACTCTTGAGGCAGCGGTACTATTATGCAACATGGAAA 1311
Query 1437 GCTGATGGAACGCGATATATGATGCTGCTAACCACCGATGGATGTTA-CATAGTAGATAG 1495
|||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 1312 GCTGATGGAACGCGATATATGATGCTGCTAACCATAGATGGATGCTATC-TAGTAGATAG 1370
Query 1496 AAGCTTTAGATTCCGGAGGGTACAGATGCGGTTCCCCTTTAGGCACCCAACTGAAGGCAT 1555
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1371 GAGCTTTAGATTCCGGAGGGTACAGATGCGGTTCCCCTTCAGGCACCCAACTGAAGGCAT 1430
Query 1556 ATCTGATAAAGTGCACCATTTCACATTACTTGATGGAGAAATGATAATCGATACCTTGCC 1615
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1431 ATCTGATAAAGTGCACCATTACACATTGCTTGATGGAGAAATGATAATCGATACCTTGCC 1490
Query 1616 AGATAAACAAAAGCAGGAGAGGAGATACCTAATCTATGACATGGTAGCAATCAACGGCCA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGATAAACAAAAGCAGGAGAGGAGATACCTAATCTATGACATGGTAGCAATCAACGGCCA 1550
Query 1676 ATCAGTTGTAGAGAGGCCTTTCTATGAAAGATGGAAGATGCTCGAGAAGGAGGTGATAGA 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 ATCAGTTGTAGAGAGGCCTTTCTATGAAAGATGGAAGATGCTCGAGAAGGAGGTGATAGA 1610
Query 1736 CCCCCGTAATCATGAGAAGGCAAGAAGTCATATCTATAGATATGATCTTGAGCCTTTTAG 1795
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1611 CCCCCGTAATCATGAGAAGGCCAGAAGTCATATCTACAGATATGATCTTGAGCCTTTTAG 1670
Query 1796 GGTGCGGAGAAAGGATTTCTGGTTGCTTTCTGCGGTTGAGAAGGTTTTGAAGGGTTTCAT 1855
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GGTGCGGAGAAAGGATTTTTGGTTGCTTTCTGCGGTTGAGAAGGTTTTGAAGGGTTTCAT 1730
Query 1856 ACCATCACTTTCACATGAAGCCGACGGCCTAATCTTTCAGGGCTGGGATGATCCTTATGT 1915
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 ACCGTCACTTTCACATGAAGCCGACGGCCTAATCTTTCAGGGCTGGGATGATCCTTATGT 1790
Query 1916 TCCCCGCACCCATGAAGGTCTGTTGAAATGGAAGTATCCAGAGATGAACTCGGTTGACTT 1975
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1791 TCCCCGCACCCATGAAGGTCTGTTGAAGTGGAAGTATCCAGAGATGAACTCGGTTGACTT 1850
Query 1976 TCTATACGAGCAGGATGAGAGTGGCCGTGGAATGCTCTCCTTGTTTGAAAGAGGGAAGAA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TCTATACGAGCAGGATGAGAGTGGCCGTGGAATGCTCTCCTTGTTTGAAAGAGGGAAGAA 1910
Query 2036 AAAGCATATGGATGGAAATTCTGTTGTTTTTAGAGATGATTCAGACCCTGCTGAGTACTC 2095
||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1911 AAAGCATATGGATGGGAATTCTGTTGTTTTTAGAGATGATTCAGACCCTTCCGAGTACTC 1970
Query 2096 TGGGAAGATTGTAGAGTGTTCTTGGGATCAGGATGAGAAAGTCTGGGTAAGCATGCGGGT 2155
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 TGGGAAGATTGTAGAATGTTCTTGGGATCAGGATGAGAAAGTCTGGGTAAGCATGCGGGT 2030
Query 2156 CAGGGTCGATAAATCAACGCCAAATGATATCAACACTTTCAGAAAGGTGATGAGAAGCAT 2215
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2031 CAGGGTCGATAAATCAACGCCTAATGATATCAACACTTACAGAAAGGTGATGAGAAGCAT 2090
Query 2216 AAAGGACAACATCACAGAGGAAGTGCTACTGCAGGAGATAAGGGAGATCATCCGTTTGCC 2275
|||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 2091 CAAGGACAACATCACAGAGGAAGTGTTGCTGCAGGAGATAAGGGAGATAATCCGTTTGCC 2150
Query 2276 TATGTATGCGGATCGTATTCAAATGGATAGCAAAGCTGCGCGCCGCAGATGAAAC---GT 2332
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 2151 TATGTATGCGGACCGTATCCAAATGGATAGCAAAGCTGCGCGTCGCAGATGAAACAATGT 2210
Query 2333 CTGTTTGTTTCTCTCAATATACCCAAGAAGCTGAGTCAAGAAAAAG-ACATGTCTGGGTT 2391
||||||||||||||||||||| | |||||||||| |||||||||| ||| | ||| ||
Sbjct 2211 CTGTTTGTTTCTCTCAATATATACTAGAAGCTGAG-CAAGAAAAAGGACACCTGTGGATT 2269
Query 2392 GGCAGTAATGCTTTTGCTTCTCTTCTTTGCAAATCCCGGGGTGCTTCTATACT--AACAT 2449
||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 2270 GGCGGTAATGCTTTTGCTTCTCTTCTTTGCAAATCCTGGG-TGCTTCTATACTCTAACAC 2328
Query 2450 TGTACGTAAG-AAGGaaaaaaaaaG-AACGCTGCATTTCTCGAATGTGTAAGAATCCCGG 2507
|||||||| | ||| || ||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 2329 TGTACGTACGTAAG-AAGAAAGAAGGAACTCTGCATTTCTCGAATGTGTAAGAATCCCGG 2387
Query 2508 TTTCAAGGAGGTTTTAGGGTGGGTTTATTATGAATCAAAATTCCGTTTGGGGGTATGTGA 2567
|| | ||||||||||||||| || |||||||||||| || ||||||||| |||||||
Sbjct 2388 TTCCGAGGAGGTTTTAGGGT---TT-ATTATGAATCAAGATCCCGTTTGGGA-TATGTGA 2442
Query 2568 TGATGGTTTTAGCTT-GATAAGATGTGTTTACTCTTCTAAGTGATTCATATGTTTAGATG 2626
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2443 TGATGGTTTTAGCTTTGATAAGGTGTGTTTACTCTTCTAAGTGATTCATATGTTTAGATG 2502
Query 2627 AAG--G-TGTTTGTAATATTACTAGCAATAGTACTTAGGAATGTTGTAATCTTTTAGTAT 2683
||| | ||||||||||| ||| || |||||||||||||| |||||||||||||||||||
Sbjct 2503 AAGAAGGTGTTTGTAATAGTACAAGTAATAGTACTTAGGA-TGTTGTAATCTTTTAGTAT 2561
Query 2684 TAGTATCATATTATTATTGTTGGTTCCATTATACTTCAGAAGCAAAAGAATGTT 2737
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2562 TAGTATCATCTTATTATTGTTGGTTCCATTTTACTTGAGAAGCAAAAGAATGTT 2615
> Ahg939541 jgi|Araly1|939541|scaffold_600085.1
Length=2046
Score = 1421 bits (769), Expect = 0.0
Identities = 1586/1968 (81%), Gaps = 106/1968 (5%)
Strand=Plus/Plus
Query 414 TCTGCTGTTGAAATCGCTAGACGGGAACGTGAAGAGA-GAAAGAAACGAATGAGATATGA 472
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 101 TCTGCTGTTGAGATCGCTAGACGGGAGCGTGAAGA-ACGAAAGAAACGAATGAGATATGA 159
Query 473 CAAGCCAACACATAA-CTCTCAGCCAGTTTTCCGTGATCAATATTACCAGAATCGAAATA 531
|| |||||| || || ||||||||| ||||| ||||| || | ||| ||||| || |||
Sbjct 160 CAGGCCAAC-CAGAAGCTCTCAGCCGGTTTTTCGTGACCAGTCTTATCAGAAGAGAGATA 218
Query 532 CTAAAGCTTATGAT-AGATACAAGATCCCTCAAGGTTGGCTAGACTGCCCTCCTTCTGGG 590
||| || ||||||| | | |||| | ||||| ||||||||||| || ||| || |||
Sbjct 219 CTAGAGTTTATGATCAAAG-CAAGCTTCCTCAGGGTTGGCTAGATTGTCCTGGTTTTGGT 277
Query 591 AATG-AGATAGGAT-TCCTCGTTCCTTCAAAAGTTCCCCTGAATGAATCTTACAAT-AAT 647
|| ||||||| | | | ||||||| || ||||| || | |||||||||||| ||
Sbjct 278 C-TGGAGATAGGTTGTATTA-TTCCTTCTAAGGTTCCTCTTAGTGAATCTTACAACGAA- 334
Query 648 CATGTACCTCCTGG-AAGTAGATACTCTTTTAAACAGGTGATCCATAACCAGAGGAT-AG 705
||||| |||||||| || ||||||||||||||||||||| ||| ||||||||| || |
Sbjct 335 CATGTTCCTCCTGGTAAA-AGATACTCTTTTAAACAGGTGGTCCGTAACCAGAGAATTAA 393
Query 706 CTGGGAGAAAGCTTGGTCTGGTGATCGATTTGACAAACACAACTCGTTACTATTCTACGA 765
||| ||||| |||||||| ||||| ||| | || || |||||||||||||| |||| |
Sbjct 394 -TGGAAGAAAACTTGGTCTTGTGATTGATCTAACTAATACAACTCGTTACTACCCTAC-A 451
Query 766 CA-GACTTGAAGAAAGAAGGCATTAAGCATGTGAAGATTGCATGCAAGGGTCGTGATGCA 824
| ||||| ||||| || ||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 452 CTTGACTTAAAGAAGGATGGCATCAAGCATGTTAAGATTGCATGCAGGGGTCGTGATGCC 511
Query 825 GTGCCAGATAATGTGTCTGTCAACGCATTTGTCAATGAGGTTAAT-CAGTTTGTCCTAAA 883
||||| |||||||||||||| ||| | |||||||| |||||| | ||||| ||||| ||
Sbjct 512 GTGCCTGATAATGTGTCTGTAAACACCTTTGTCAACGAGGTTC-TGCAGTTCGTCCTTAA 570
Query 884 TCTAAAACACTCGAAA-AAGTATATTCTCGTCCATTGTACACATGGACATAATCGGACAG 942
|| ||||||| | ||| |||||| | |||||||| ||||||||||| |||||||||||||
Sbjct 571 TCAAAAACACGC-AAAGAAGTATGTCCTCGTCCACTGTACACATGGGCATAATCGGACAG 629
Query 943 GGTTCATGATAGTTCATTATCTCATGCGATCTGGGCCAA---TGAATGTTACACAGGCTT 999
| |||||||||||||||||||| ||||| ||| ||||| |||| ||||||||||| |
Sbjct 630 GTTTCATGATAGTTCATTATCTTATGCGCTCTATGCCAACGATGAACGTTACACAGGCAT 689
Query 1000 TGAAAATCTTTTCCGATGCCCGCCCACCTGGGATCTATAAACCAGATTATATTGATGCTT 1059
|||| | ||||| |||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 690 TGAAGTTGTTTTCTGATGCCCGCCCACCTGGGATTTATAAAGCGGATTATATTGATGCTT 749
Query 1060 TATACTCGTTTTATCACGAAATAAAACCTGAAAGCGTCATTTGCCCATCAACTCCTGAAT 1119
||||| | ||||||||||||||||| ||||| || || | ||||||| |||||||| |||
Sbjct 750 TATACACTTTTTATCACGAAATAAAGCCTGAGAGTGTTACTTGCCCACCAACTCCTCAAT 809
Query 1120 GGAAGAGGTCTACTGAGCTTGAT-TTAAATGGTGAAGCT-TTGCCAGATGATGAAGATGA 1177
||||||||||||| ||||||||| |||| |||||||||| || | ||||||||| |||||
Sbjct 810 GGAAGAGGTCTACCGAGCTTGATCTTAA-TGGTGAAGCTGTT-CAAGATGATGATGATGA 867
Query 1178 TGATGGCGGTCCTGCTGGTCCTGTGCAAGGTTTCCAGGAGGAAAGTCATCAGGTGGA-TG 1236
||||| || | | | |||| | | || | | || ||| | |||||| | | ||
Sbjct 868 TGATGAT--TC-TCC-G--CCTGACCCTG-TT-C-A--AG-AAATTAATCAGGAG-ACTG 914
Query 1237 TCAAGATGTCAAATGATGACGTTCTAGGTGATGAAATACCCCCAG-ACCAGGAGGAAGGT 1295
| |||||||||||||||||| || | |||||||||||||||| | | |||||||||| |
Sbjct 915 TGAAGATGTCAAATGATGACATTTTGGGTGATGAAATACCCC-ATTATCAGGAGGAAGCT 973
Query 1296 TACCGCCAATTCTTTTATAGGATGCT--ATC-A-----C-------TGAATATTGGGGGA 1340
||||| ||||||| ||||| |||||| ||| | | ||||||||||||||
Sbjct 974 TACCGGCAATTCTGTTATAAGATGCTTTATCCAGAAAACAAGAAGATGAATATTGGGGGA 1033
Query 1341 AGAGGATGTTCA-CAATTTCCAGGTTCACACCCTGTCTCCTTAAACAGGGAAAATTTGCA 1399
|||||||| | | ||| |||||||| |||||||| || ||| ||||||| | ||||||
Sbjct 1034 GGAGGATGTA-AGCCATTCCCAGGTTCGCACCCTGTATCATTAGACAGGGAGAGTTTGCA 1092
Query 1400 ACTCTTGAGGCAGCGGTACTATTATGCAACATGGAAAGCTGATGGAACGCGATATATGAT 1459
||| ||||| ||||||||||||||||| |||||||| || |||||||| || ||||||||
Sbjct 1093 ACTTTTGAGACAGCGGTACTATTATGCGACATGGAAGGCAGATGGAACACGTTATATGAT 1152
Query 1460 GCTGCT-AACCACCGATGGATGTTACAT-AGTAGATAGAAGCTTTA-GATTCCGGAGGGT 1516
||| || ||| | ||||| || || | | ||||||| ||||||| | ||| |||||||
Sbjct 1153 GCT-CTTAACTATAGATGGGTGCTATTTGA-TAGATAGGAGCTTTAAGTTTC-GGAGGGT 1209
Query 1517 ACAGATGCGGTTCCCCTTTAGGCACCCAAC-TGAAGGCATATCTGATAAAGTGCACCATT 1575
||||||||| || |||| || |||| || | ||| || || |||||||||||||| || |
Sbjct 1210 ACAGATGCGTTTTCCCTGTAAGCACTCA-CGTGAGGGAATTTCTGATAAAGTGCATCACT 1268
Query 1576 TCACATTACTTGATGGAGAAATGATAATCGATACCTTGCCAGATAAACAAAAGCAGGAGA 1635
||| || ||||||||||| ||| | || |||||| | ||| | ||||| | ||| ||
Sbjct 1269 ACACTTTGCTTGATGGAGAGATGGTCATAGATACCCCGACAGGTGAACAAGGGGAGGCGA 1328
Query 1636 GGAG-A--TACCTAATCTATGACATGGTAGCAATCAACGGCCAATCAGTTGTAGAGAGGC 1692
|||| | ||||| | ||||| |||||||||||||||||| ||||||| |||||| ||
Sbjct 1329 GGAGGAGGTACCTCGTATATGATATGGTAGCAATCAACGGCGAATCAGTCGTAGAGCGGA 1388
Query 1693 CTTTCTATGAAAGATGGAAGATGCTCGAGAAG-GAGGTGATAG-ACCCCC-GTAATCATG 1749
|||||| |||||||||||| ||| ||| | | |||||||| | ||| | | | | ||
Sbjct 1389 CTTTCTGTGAAAGATGGAACATGTTCGTGC-GTGAGGTGATCGGACCTCGAGCAG-C-TG 1445
Query 1750 AGAAGG-CAAGAAGTCATAT-CTATAGATATGATCTTGAGCCTTTTAG-GGTGCGGA-GA 1805
||||| || |||||||| | |||||||||||| |||||||||||| | ||| |||| ||
Sbjct 1446 AGAAGCTCA-GAAGTCAT-TGCTATAGATATGACCTTGAGCCTTTT-GCGGTACGGATGA 1502
Query 1806 AAGGATTTCTGGTTGCTTTCTG-CGGTTGAGAAGGTTTTGAAGGGTTTCATACCATCACT 1864
| || ||| ||||| ||||| | | ||||||||| |||||||| | ||| ||||| ||
Sbjct 1503 AGGGTTTT-TGGTTACTTTC-GACTGTTGAGAAGCTTTTGAAGAATACCATTCCATCGCT 1560
Query 1865 TTCACATGAAGCCGACGGCCTAATCTTTCAGGGCTGGGATGATCCTTATGTTCCCCGCAC 1924
||| |||||||| || ||| |||| |||||||| |||||||||||||||||||| || ||
Sbjct 1561 TTCGCATGAAGCAGATGGCTTAATATTTCAGGGTTGGGATGATCCTTATGTTCCACGAAC 1620
Query 1925 CCATGAAGGTCTGTTGAAATGGAAGTATCCAGAGATGAACTCGGTTGACTTTCTATACGA 1984
|||| ||||||||||||| ||||||||| |||| ||||||||||| |||||||| | ||
Sbjct 1621 CCATAAAGGTCTGTTGAAGTGGAAGTATGCAGAAATGAACTCGGTAGACTTTCTGTTTGA 1680
Query 1985 G-CAGG--ATGAG-AGTGGCCGTGGAATGCTCTCCTTGTTTGAAAGAGGGAAGAAAAAGC 2040
| | || | ||| || ||| |||| | |||| |||| ||||||||||||||||||||
Sbjct 1681 GACGGGTGAGGAGGAGGGGC-GTGGTTTCCTCTTCTTGCATGAAAGAGGGAAGAAAAAGC 1739
Query 2041 ATATGGATGGAAATTCTGTTGTTTTTAGAGATGATTCAGACCCTGCTGA-GT-ACTCTGG 2098
|||||| ||| |||| |||| |||||||||||||| ||||| | | | || || |||
Sbjct 1740 TTATGGAAGGATATTCAGTTGAGTTTAGAGATGATTCGGACCC-G-TCAAGTTACAATGG 1797
Query 2099 GAAGATTGTAGAGTGTTCTTGGGATCAGGATGAGAAAGTCTGGGTAAGCATGCGGGTCAG 2158
|||||||||||||||| | |||||| ||||| ||||||| ||| | ||||||||| ||||
Sbjct 1798 GAAGATTGTAGAGTGTGCATGGGATAAGGATAAGAAAGTTTGGTTTAGCATGCGGATCAG 1857
Query 2159 GGTCGATAAATCAACGCCAAATGATATCAACACTT-TCAGAAAGGTGATGA-GAAGCATA 2216
|| || ||| | || ||||||||||||||||| || | |||||||| | || |||||
Sbjct 1858 AGTTGACAAAACTACACCAAATGATATCAACACCGCTC-GTAAGGTGATAAAGA-GCATA 1915
Query 2217 AAGGACAACATCACAGAGGAAGTGCTACTGCAGGAGATAAGGGAGATCATCCGTTTGCCT 2276
|| || |||||||| ||||| ||||| || ||||| |||| |||||||| ||| | ||
Sbjct 1916 AATGATAACATCACTGAGGAGGTGCTGCTTCAGGAAATAAAAGAGATCATACGTCTCCCG 1975
Query 2277 ATGTATGCGGATCGTATTC-AAATGGATAG-CAAAGCTGCGCGCCGCA 2322
||||| || || || |||| ||||| |||| ||| ||||| |||||||
Sbjct 1976 ATGTACGCTGACCGCATTCGAAATG-ATAGTCAA-GCTGCACGCCGCA 2021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104938624975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5