BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09110.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903774 jgi|Araly1|903774|Al_scaffold_0003_902 2215 0.0
Ahg358998 jgi|Araly1|358998|fgenesh1_pg.C_scaffold_9000038 213 3e-54
Ahg358997 jgi|Araly1|358997|fgenesh1_pg.C_scaffold_9000037 174 2e-42
> Ahg903774 jgi|Araly1|903774|Al_scaffold_0003_902
Length=1479
Score = 2215 bits (1199), Expect = 0.0
Identities = 1389/1482 (94%), Gaps = 8/1482 (1%)
Strand=Plus/Plus
Query 29 ATGGCTAAGAGCTTTGAGAAGCCGAAGTTTAGCCTAAGACTTCTCATTGATGAGGAGAAA 88
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTAAGAGCTCCGAGAAGCCCAAGTTTAGTCTAAGACTTCTCATTGATGAGGAGAAA 60
Query 89 AACAGAGTTATTTTGGCTGAAGCTGGGAAGGATTTTGTTGATGTGCTCTGTAGTCTTTTG 148
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGAGTTGTTTTGGCTGAAGCTGGGAAGGATTTTGTTGATGTGCTCTGTAGTCTTTTG 120
Query 149 ACTCTTCCTATGGGTACCATTGTCAGGTTGCTCGAGAAGCATCAGAATCCGCAGTCTTCA 208
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 121 ACTCTCCCTATGGGTACCATTGTCAGGTTGCTTGAGAAGCATCAGAATCCGCAGTCTGCA 180
Query 209 GTCGTTGGTTGTTTACACAATCTTTACAAAAGTGTTGCAGACATGGACGTTGATAATTTC 268
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 181 ATTGTTGGTTGTTTTCACAATCTTTACAAAAGTGTTTCAGACATGGACGTTGATAACTTC 240
Query 269 GAGTCTCAAGCTTGTAAGCATTTCTTGCTGCATCCTCGGAGTGCGAAGGGGAGTCATGGC 328
|| |||||||||||||| |||| |||||||||||||| ||||| |||| ||||||||||
Sbjct 241 CAGACTCAAGCTTGTAAGAATTTGTTGCTGCATCCTCGTAGTGCTAAGGCGAGTCATGGC 300
Query 329 AGAGATCTAAAGCTCAACATTGATGACACCGAGGCGACCAAGTTCTTTGTCTGCCCAAAT 388
||| | |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 301 AGAAAGCTAAAGCTGAACATAGATGACACTGAGGCGACCAAATTCTTTGTCTGCCCAAAT 360
Query 389 TTTGTTTCTACTGAAGCATGCCGTAAGTTATTCAGCAATGTTAGTACCATGAAGTGTCGT 448
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||
Sbjct 361 TTTGTTTCTACTGAAGCATGCCGTAAGTTATACAGCCATGTTAGTACCACGAAGTGTTGT 420
Query 449 TGTGGAAGCTCTATGCA-CCGTGAGATTCCGGTTGAAGAACAGCAAGCTGATGGAGTATT 507
|||||||| || ||| | || ||||||||||||||||||| | |||||||||||||||||
Sbjct 421 TGTGGAAGTTCAATG-ACCCATGAGATTCCGGTTGAAGAAGATCAAGCTGATGGAGTATT 479
Query 508 TCCCAGCTGCAGAACATCATTTGTTATTACGGATGATCTCAAAGTGGCATTGAACTCTAT 567
| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 480 GCTCAGCTGCAGAACATCATTTGTTATTACTGATGATCTTAAAGTGGCATTGAACTCTAT 539
Query 568 GGGTCTTGTTTTGAATGTCCTCAATGATTTTGGTTACTCTGGTTTTGATAAGCTGCAAGA 627
|||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 540 GGGTCTTGTTATGAATGTTCTCAATGATCTTGGCTACTCTGGTTTTGATAAGCTGCAAGA 599
Query 628 AATGCTTATTGATGTTGGTTTTGAAGAGATTCTAACTTTGCTAGGGTGTTTGTTCACTTC 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGCTTATTGATGTTGGTTTTGAAGAGATTCTAACTTTGCTAGGGTGTTTGTTCACTTC 659
Query 688 GGAAGCTCCATTGACAGACACCTTCCTGAGGAAACATTGCATGTCAAGGAAACGTAAAAT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGAAGCTCCATTGACAGACACCTTCCTGAGGAAACATTGCATGTCAAGGAAACGTAAAAT 719
Query 748 GTTGACACCACTTGTACAAGAAAGCAGTGTTGCAGGAGCTGCAGACA-ATCTCTTAACTT 806
|||||||||||||||||||||||| ||||||||||| | |||||| | | | ||||||||
Sbjct 720 GTTGACACCACTTGTACAAGAAAGTAGTGTTGCAGGGGTTGCAGAAACACC-CTTAACTT 778
Query 807 TGAAAGTTTATGTTAGAAAGACAGACAGGGCTGTTCTCTATGCTGAGTGCAGAGAAGAAT 866
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 779 TGAAAGTTTATGTTAGAAAGTCAGACAGGGCTGTTCTGTATGCTGAATGCAGAGAAGAAT 838
Query 867 TCGTTGATTTTCTTTTCACTTTTCTTGCCATCCCGATTGAGTTTGCTTGGGAACTTTCTA 926
| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 TTGTTGATTTTCTATTCACTTTTCTTGCCATCCCGCTTGAGTTTGCTTGGGAACTTTCTA 898
Query 927 TTGACATTGGTAATATGGGCTGTGTTGGTAATCTGTGCAGAAGTGTGAAAGATTTGAGCT 986
|||||| || ||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 899 TTGACAATGTTAAAATGGGCTGCGTTGGTAATCTGTGCAGAAGCGTGAAAGATTTGAGCT 958
Query 987 TTGAGAAGCAGAAAGCAGCCACAGTTTCTCAATGCATGCTTCCTTATT-TCTAC--TGGA 1043
||||||||||||||| |||||| |||||| |||||||||||||||||| | ||| ||||
Sbjct 959 TTGAGAAGCAGAAAGAAGCCACTGTTTCTAAATGCATGCTTCCTTATTAT-TACAATGGA 1017
Query 1044 AGGGCACAACCTCTTGATGTTGTTATCCAGGAATCACCAGAATATGAATGCTTGGTCACC 1103
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 AGGGCACAACCTCTAGATGTTGTTATCCAGGAATCACCAGAATATGAATGCTTGGTTTCC 1077
Query 1104 CATTATGGTCATAACATGCTCTGTAAAAAGATTAACAAGGCTGTGCTTTCAAACGGTGAA 1163
| ||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1078 CGTTATGGTCATAGCATGCTCTCTAAAAAGATTAACAAGACTGTGCTTTCAAACGGTGAA 1137
Query 1164 ATAATTGCAAAGTTCACTTCAGCTTCTGCTAGTATTGGACTTGTGAAGGGAGAAACAAAT 1223
||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1138 ATACTTGCAAAGTTCACTTCAGTTTCTGCTAGTATTGGACTTGTGAAGGAAGAAACGAAT 1197
Query 1224 TTCATAGTGTCAGATGATCTGGTTGTCACTCCTATGAACTCGTCCTCAACAATTTCATTG 1283
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 TTCATAGTGTCTGATGATCTGGTTGTCACTCCTATGAACTCGTCCTCAACAATTTCACTG 1257
Query 1284 TTAAGCAAGCTGCAGATGAACATTGGTGATATTGAGGAGCAAGTAATTAGCATTGGCAAA 1343
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 TTAAGCAAGCTGCAGATGAACATTGGTGATATCGAGGAGCAAGTAATTAGCATTGGCAAA 1317
Query 1344 GCTGAGGCCACTAGCTTACTTAGAGCTTCTTTGATCACAACCTCTGCCTTAACCAATGGT 1403
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1318 GCTGAGGCCACTAGTTTACTTAGAGCTTCGTTGATCACAACCTCTGCGTTAACCAATGGT 1377
Query 1404 CTCTCAAACTTCCTCTCAAAGATGGACCCGGACGAAGTAACTCAATCTACACCTAAGATT 1463
||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1378 CTCTCCAGCTTCCTCTCAAAGATGGACCCGGACGAAGCAACTCAAGCTACACCTAAGATT 1437
Query 1464 CAAAAGTCTGACAAACCAAATGAAGCTTGGCAGCTTCTGTAG 1505
||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1438 CAAAAGTCTGACAAACCCAATGAAGCATGGCAGCTTCTGTAG 1479
> Ahg358998 jgi|Araly1|358998|fgenesh1_pg.C_scaffold_9000038
Length=393
Score = 213 bits (115), Expect = 3e-54
Identities = 185/218 (85%), Gaps = 7/218 (3%)
Strand=Plus/Plus
Query 443 TGTCGTTGTGGAAGCTCTATGCAC-CGTGAGATTCCGGTTGAAG-A--ACAGCAAGCTGA 498
||| ||||||| ||||| ||| || || ||| ||| | |||||| | | || ||| |||
Sbjct 142 TGTAGTTGTGGCAGCTCGATG-ACTCGCGAGTTTCAGTTTGAAGAAGGAGAGGAAGTTGA 200
Query 499 TGGAGTATTTCCCAGCTGCAGAACATCATTTGTTATTACGGATGATCTCAAAGTGGCATT 558
||||||||||| |||||| |||||||| ||| | || || ||||||||||| ||||||||
Sbjct 201 TGGAGTATTTCTCAGCTGTAGAACATCGTTTATCATCACCGATGATCTCAATGTGGCATT 260
Query 559 GAACTCTATGGGTCTTGTTTTGAATGTCCTCAATGATTTTGGTTACT-CTGGTTTTGATA 617
|||||||||||||||||| ||||||| ||||||||| ||| || | |||||||||||
Sbjct 261 GAACTCTATGGGTCTTGTACTGAATGTTCTCAATGATCATGGCTA-TGATGGTTTTGATA 319
Query 618 AGCTGCAAGAAATGCTTATTGATGTTGGTTTTGAAGAG 655
| ||||||||||||||||||||||||||||||||||||
Sbjct 320 AACTGCAAGAAATGCTTATTGATGTTGGTTTTGAAGAG 357
> Ahg358997 jgi|Araly1|358997|fgenesh1_pg.C_scaffold_9000037
Length=546
Score = 174 bits (94), Expect = 2e-42
Identities = 133/152 (88%), Gaps = 1/152 (1%)
Strand=Plus/Plus
Query 1176 TTCA-CTTCAGCTTCTGCTAGTATTGGACTTGTGAAGGGAGAAACAAATTTCATAGTGTC 1234
|||| |||||| ||||| | |||| || |||||||| |||||| ||||||||||||||
Sbjct 120 TTCATCTTCAGATTCTGGGAATATTCGAATTGTGAAGCAAGAAACGAATTTCATAGTGTC 179
Query 1235 AGATGATCTGGTTGTCACTCCTATGAACTCGTCCTCAACAATTTCATTGTTAAGCAAGCT 1294
|||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |
Sbjct 180 AGATGATCTGGTTGTCACACCTATGAAGTCATCCTCAACAATTTCATTATTAAGCAAGTT 239
Query 1295 GCAGATGAACATTGGTGATATTGAGGAGCAAG 1326
||| ||||| || ||||||||||||||||||
Sbjct 240 GCAAATGAATATCAGTGATATTGAGGAGCAAG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5