BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G09120.1 Length=1625 Score E Sequences producing significant alignments: (Bits) Value Ahg478225 jgi|Araly1|478225|fgenesh2_kg.3__926__AT3G09120.1 1476 0.0 > Ahg478225 jgi|Araly1|478225|fgenesh2_kg.3__926__AT3G09120.1 Length=1124 Score = 1476 bits (799), Expect = 0.0 Identities = 1024/1132 (90%), Gaps = 18/1132 (2%) Strand=Plus/Plus Query 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAAGAAAACTCTTGAGATTCGTAACC 60 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAA-AACCCTCTTGAGATTCGTAACT 59 Query 61 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTATTCACATCTTCATA-CCGAGATACC 119 |||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||| | Sbjct 60 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTGTTCACGTCTTCATAGCCTA-ATATC 118 Query 120 TAAAACCTCAGTTACTGCTCTTCCTTGCTTTT-CTCTTACTCGTTTCCTTAACTTAAAAT 178 |||| ||||||||||||||||||||| |||| |||||||||||||||||||| || ||| Sbjct 119 TAAATTCTCAGTTACTGCTCTTCCTTG-TTTTGCTCTTACTCGTTTCCTTAACCTACAAT 177 Query 179 GGCTAAG-AGTGAGAAGATTAGCTTGAAACTTCTCGTTGATGAGaaaaaaaaCAAGGTTG 237 ||| ||| |||| |||| |||||||||||||||||||||||||||| |||||||| |||| Sbjct 178 GGC-AAGAAGTGCGAAGTTTAGCTTGAAACTTCTCGTTGATGAGAAGAAAAACAAAGTTG 236 Query 238 TTTTGGCTGAGGCTGGTCAAGATTTTGTTGATGTGCTCTTTGGTCTCTTGACATTCCCAA 297 | || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 237 TGTTAGCTGAGGCTGGTCATGATTTTGTTGATGTGCTCTTTGGTCTCTTGACACTCCCAA 296 Query 298 TGGGGACTATTGCAAGATTGCTGGAGAAGCATCAGAAGTTACCACAAATCCTAGGATGTT 357 |||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||| Sbjct 297 TGGGGACTATTGCAAGATTGCTGGAGAATCATCAGAAGTTACCACAAGTCTTAGGTTGTT 356 Query 358 ACAAGAATCTTAGTCGAAGTGTTTCAGATATGGCCGTTGATGATTTCAAGACCGAGGCTT 417 |||||||||||| | ||||||||||||||||| | ||||||||||| |||||||||||| Sbjct 357 ACAAGAATCTTAAACAAAGTGTTTCAGATATGGTCATTGATGATTTCGAGACCGAGGCTT 416 Query 418 GTAAGAGTATGTTGCTTTCTCCAAAGAGCTCCATGGAGATCCATTGCAGAAGACTCAAAC 477 | |||||||||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 417 GCAAGAGTATGTTGCTTTCTCCAAAGAGTTCGAAGGAGATCCATTGCAGAAGACTCAAGT 476 Query 478 TGCACATTGATGATACT-CAGGCTACAATGTTCTATGTATGCTCAAAAAAGCATGAGAGC 536 || |||||||||||||| | ||| |||| ||||||||||||||| ||| | |||||||| Sbjct 477 TGAACATTGATGATACTGC-GGCCACAACGTTCTATGTATGCTCTAAATTGTATGAGAGC 535 Query 537 GACTCAAGTAA-GTAT--AGCAATTTTTACAAATCAAGATGTAGCTGTGGATCTTTGATG 593 |||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 536 GACTCATGTAAGGTATACAGCAATTTTTACAACTCAAGATGTAGCTGTGGATCTTTGATG 595 Query 594 ATCTA-TCAGATTCATGTTCCAGAAGATGAGCAAGTTGTAGACTCGTTAGGAAATGCTGA 652 | ||| || | |||| ||||||||||| | ||||||| |||| | |||||| ||||||| Sbjct 596 AGCTATTC-GGTTCAGGTTCCAGAAGACGCGCAAGTTCTAGAGTTGTTAGGGAATGCTGT 654 Query 653 AGATGTTGTGTTTGTTAGCTGTAGATCATCTTTCATTCTGACAGATGATTTGAAAGTGAT 712 ||||| ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||| Sbjct 655 AGATGGTGTGTTTGTTAGCTGTAGATCCTCTTTCATTGTCACAAATGATTTGAAAGTGAT 714 Query 713 GTTGAATTCTATCGATGAAATAGTCAAGGTTCTCAATGGCCTAGGATATCCAAATATAAA 772 |||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| Sbjct 715 GTTGAACTCTATTGATGAAATAGTGAAGGTGGTCAATGGCCTAGGATATCCAAATTTAAA 774 Query 773 CGATCTTAAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTTTTGTCTCTACTGGGGAA 832 || || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 775 TGAGCTGCAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTGCTGTCTCTACTGGGGAA 834 Query 833 TTTATTCACTTCAGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGTGTATGACGAC 892 |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 835 TTTATTCACTTCCGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGAGCATGACAAC 894 Query 893 GATGCTTACACTGTCACCTCCACCAATGTTCAAAACTGG-ACGGGTAGAACAGGGCAGTG 951 ||||||| || || | ||||||||||||||||||||||| || |||||||||||||||| Sbjct 895 GATGCTTCCATTGCCGCCTCCACCAATGTTCAAAACTGGAAC-AGTAGAACAGGGCAGTG 953 Query 952 GATGCCATATTAAAGTGTTCGTTGGAAAGTTAGACAGAAAGATTCTTTATGCTGAGTGCA 1011 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 954 GATGCCATATGAAAGTGTTCGTTGGAAAGTTAGACAGGAAGATTCTTTATGCTGAGTGCA 1013 Query 1012 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTGCCTCTCGAGTCGGCGTCTT 1071 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1014 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTCCCTCTTGAGTCGGCGTCTT 1073 Query 1072 CGTTCTTCGAA-GACAATACCATTATCGGATGTGTAAAGAATTTGTGCTGAT 1122 || ||| | || |||||||||||| | |||||||| |||||||||||| ||| Sbjct 1074 CGCTCTCC-AATGACAATACCATTTTTGGATGTGTCAAGAATTTGTGCAGAT 1124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60906301755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5