BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G09120.1
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478225 jgi|Araly1|478225|fgenesh2_kg.3__926__AT3G09120.1 1476 0.0
> Ahg478225 jgi|Araly1|478225|fgenesh2_kg.3__926__AT3G09120.1
Length=1124
Score = 1476 bits (799), Expect = 0.0
Identities = 1024/1132 (90%), Gaps = 18/1132 (2%)
Strand=Plus/Plus
Query 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAAGAAAACTCTTGAGATTCGTAACC 60
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 CTTGTGGTTTCATTATTCTCATTTACTGTCTGATAAA-AACCCTCTTGAGATTCGTAACT 59
Query 61 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTATTCACATCTTCATA-CCGAGATACC 119
|||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||| |
Sbjct 60 GCTGGTTCTTCAATATATAGAGGCGCATCTTCTTGTTCACGTCTTCATAGCCTA-ATATC 118
Query 120 TAAAACCTCAGTTACTGCTCTTCCTTGCTTTT-CTCTTACTCGTTTCCTTAACTTAAAAT 178
|||| ||||||||||||||||||||| |||| |||||||||||||||||||| || |||
Sbjct 119 TAAATTCTCAGTTACTGCTCTTCCTTG-TTTTGCTCTTACTCGTTTCCTTAACCTACAAT 177
Query 179 GGCTAAG-AGTGAGAAGATTAGCTTGAAACTTCTCGTTGATGAGaaaaaaaaCAAGGTTG 237
||| ||| |||| |||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 178 GGC-AAGAAGTGCGAAGTTTAGCTTGAAACTTCTCGTTGATGAGAAGAAAAACAAAGTTG 236
Query 238 TTTTGGCTGAGGCTGGTCAAGATTTTGTTGATGTGCTCTTTGGTCTCTTGACATTCCCAA 297
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 TGTTAGCTGAGGCTGGTCATGATTTTGTTGATGTGCTCTTTGGTCTCTTGACACTCCCAA 296
Query 298 TGGGGACTATTGCAAGATTGCTGGAGAAGCATCAGAAGTTACCACAAATCCTAGGATGTT 357
|||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||
Sbjct 297 TGGGGACTATTGCAAGATTGCTGGAGAATCATCAGAAGTTACCACAAGTCTTAGGTTGTT 356
Query 358 ACAAGAATCTTAGTCGAAGTGTTTCAGATATGGCCGTTGATGATTTCAAGACCGAGGCTT 417
|||||||||||| | ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 357 ACAAGAATCTTAAACAAAGTGTTTCAGATATGGTCATTGATGATTTCGAGACCGAGGCTT 416
Query 418 GTAAGAGTATGTTGCTTTCTCCAAAGAGCTCCATGGAGATCCATTGCAGAAGACTCAAAC 477
| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 417 GCAAGAGTATGTTGCTTTCTCCAAAGAGTTCGAAGGAGATCCATTGCAGAAGACTCAAGT 476
Query 478 TGCACATTGATGATACT-CAGGCTACAATGTTCTATGTATGCTCAAAAAAGCATGAGAGC 536
|| |||||||||||||| | ||| |||| ||||||||||||||| ||| | ||||||||
Sbjct 477 TGAACATTGATGATACTGC-GGCCACAACGTTCTATGTATGCTCTAAATTGTATGAGAGC 535
Query 537 GACTCAAGTAA-GTAT--AGCAATTTTTACAAATCAAGATGTAGCTGTGGATCTTTGATG 593
|||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 GACTCATGTAAGGTATACAGCAATTTTTACAACTCAAGATGTAGCTGTGGATCTTTGATG 595
Query 594 ATCTA-TCAGATTCATGTTCCAGAAGATGAGCAAGTTGTAGACTCGTTAGGAAATGCTGA 652
| ||| || | |||| ||||||||||| | ||||||| |||| | |||||| |||||||
Sbjct 596 AGCTATTC-GGTTCAGGTTCCAGAAGACGCGCAAGTTCTAGAGTTGTTAGGGAATGCTGT 654
Query 653 AGATGTTGTGTTTGTTAGCTGTAGATCATCTTTCATTCTGACAGATGATTTGAAAGTGAT 712
||||| ||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||
Sbjct 655 AGATGGTGTGTTTGTTAGCTGTAGATCCTCTTTCATTGTCACAAATGATTTGAAAGTGAT 714
Query 713 GTTGAATTCTATCGATGAAATAGTCAAGGTTCTCAATGGCCTAGGATATCCAAATATAAA 772
|||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 715 GTTGAACTCTATTGATGAAATAGTGAAGGTGGTCAATGGCCTAGGATATCCAAATTTAAA 774
Query 773 CGATCTTAAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTTTTGTCTCTACTGGGGAA 832
|| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 775 TGAGCTGCAGGAAATGCTCATTGATGTTGGCTCTGAAGAGGTGCTGTCTCTACTGGGGAA 834
Query 833 TTTATTCACTTCAGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGTGTATGACGAC 892
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 835 TTTATTCACTTCCGAGTCTGCCTTGACAAGCACATTCCTCATGAAACAGAGCATGACAAC 894
Query 893 GATGCTTACACTGTCACCTCCACCAATGTTCAAAACTGG-ACGGGTAGAACAGGGCAGTG 951
||||||| || || | ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 895 GATGCTTCCATTGCCGCCTCCACCAATGTTCAAAACTGGAAC-AGTAGAACAGGGCAGTG 953
Query 952 GATGCCATATTAAAGTGTTCGTTGGAAAGTTAGACAGAAAGATTCTTTATGCTGAGTGCA 1011
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 954 GATGCCATATGAAAGTGTTCGTTGGAAAGTTAGACAGGAAGATTCTTTATGCTGAGTGCA 1013
Query 1012 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTGCCTCTCGAGTCGGCGTCTT 1071
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1014 GTGAAGACTTCATTGATTCTCTTCTCACTTTTCTTGTTCTCCCTCTTGAGTCGGCGTCTT 1073
Query 1072 CGTTCTTCGAA-GACAATACCATTATCGGATGTGTAAAGAATTTGTGCTGAT 1122
|| ||| | || |||||||||||| | |||||||| |||||||||||| |||
Sbjct 1074 CGCTCTCC-AATGACAATACCATTTTTGGATGTGTCAAGAATTTGTGCAGAT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5